A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A

a - Variable in class org.catacomb.numeric.math.Matrix

a - Variable in class org.textensor.stochdiff.numeric.math.Matrix

a_count - Variable in class org.catacomb.movie.gif.LZWEncoder

aaCache - Variable in class org.catacomb.graph.gui.RollHandler

ab1 - Variable in class org.catacomb.graph.gui.DataDisplay

ab2 - Variable in class org.catacomb.graph.gui.DataDisplay

Ablable - Interface in org.catacomb.interlish.structure

able - Variable in class org.catacomb.druid.blocks.AbstractButton

able - Variable in class org.catacomb.druid.blocks.LabelledTextField

able - Variable in class org.catacomb.druid.blocks.TextField

able(boolean) - Method in class org.catacomb.druid.gui.edit.DruButton

able(boolean) - Method in class org.catacomb.druid.gui.edit.DruCheckbox

able(boolean) - Method in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

able(boolean) - Method in class org.catacomb.druid.gui.edit.DruChoice

able(boolean) - Method in class org.catacomb.druid.gui.edit.DruColorChoice

able(boolean) - Method in class org.catacomb.druid.gui.edit.DruExpandingTextArea

able(boolean) - Method in class org.catacomb.druid.gui.edit.DruFloat

able(boolean) - Method in class org.catacomb.druid.gui.edit.DruInt

able(boolean) - Method in class org.catacomb.druid.gui.edit.DruLabelledTextField

able(boolean) - Method in class org.catacomb.druid.gui.edit.DruListPanel

able(boolean) - Method in class org.catacomb.druid.gui.edit.DruMenuItem

able(boolean) - Method in class org.catacomb.druid.gui.edit.DruRadioButtons

able(boolean) - Method in class org.catacomb.druid.gui.edit.DruTextArea

able(boolean) - Method in class org.catacomb.druid.gui.edit.DruTextField

able - Variable in class org.catacomb.interlish.content.PrimitiveValue

able(boolean) - Method in interface org.catacomb.interlish.structure.Ablable

AbleEffect - Class in org.catacomb.druid.blocks

AbleEffect() - Constructor for class org.catacomb.druid.blocks.AbleEffect

aboutXRotation(double) - Static method in class org.textensor.stochdiff.geom.Geom

aboutYRotation(double) - Static method in class org.textensor.stochdiff.geom.Geom

aboutZRotation(double) - Static method in class org.textensor.stochdiff.geom.Geom

AboveBelowSplitAxisPanelUI - Class in org.catacomb.graph.gui

AboveBelowSplitAxisPanelUI(GraphColors) - Constructor for class org.catacomb.graph.gui.AboveBelowSplitAxisPanelUI

AboveBelowSplitPanel - Class in org.catacomb.graph.gui

AboveBelowSplitPanel(BasePanel, BasePanel, GraphColors) - Constructor for class org.catacomb.graph.gui.AboveBelowSplitPanel

AboveBelowSplitPanelUI - Class in org.catacomb.graph.gui

AboveBelowSplitPanelUI(GraphColors) - Constructor for class org.catacomb.graph.gui.AboveBelowSplitPanelUI

abs(double) - Static method in class org.catacomb.numeric.math.DiagonalBlockMatrix

abscissa - Variable in class org.catacomb.graph.gui.DataView

AbsLocated - Interface in org.catacomb.graph.gui

absolutize(Position, double, Position) - Method in class org.catacomb.be.Position

absp - Variable in class org.catacomb.graph.gui.LeftRightSplitPanelUI

absp - Variable in class org.catacomb.graph.gui.VerticalAxisGraphDivider

AbstractButton - Class in org.catacomb.druid.blocks

AbstractButton() - Constructor for class org.catacomb.druid.blocks.AbstractButton

AbstractButton(String) - Constructor for class org.catacomb.druid.blocks.AbstractButton

accept(File) - Method in class org.catacomb.druid.swing.ExtFileFilter

acceptFile(String) - Method in interface org.catacomb.interlish.structure.NameFilter

acceptFolder(String) - Method in interface org.catacomb.interlish.structure.NameFilter

acceptsDrops() - Method in class org.catacomb.druid.swing.dnd.Region

acceptsReferents() - Method in class org.catacomb.serial.SerializationContext

Accessor - Interface in org.catacomb.interlish.structure

accum - Variable in class org.catacomb.movie.gif.LZWEncoder

action - Variable in class org.catacomb.druid.blocks.AbstractButton

action - Variable in class org.catacomb.druid.blocks.Checkbox

action - Variable in class org.catacomb.druid.blocks.CheckboxList

action - Variable in class org.catacomb.druid.blocks.CheckboxMenuItem

action - Variable in class org.catacomb.druid.blocks.CheckboxTree

action - Variable in class org.catacomb.druid.blocks.Choice

action - Variable in class org.catacomb.druid.blocks.ColorChoice

action - Variable in class org.catacomb.druid.blocks.DropBox

action - Variable in class org.catacomb.druid.blocks.FloatSlider

action - Variable in class org.catacomb.druid.blocks.IntSlider

action - Variable in class org.catacomb.druid.blocks.LabelledTextField

action - Variable in class org.catacomb.druid.blocks.List

action - Variable in class org.catacomb.druid.blocks.ListClickArea

action - Variable in class org.catacomb.druid.blocks.LoggedButton

action - Variable in class org.catacomb.druid.blocks.Menu

action - Variable in class org.catacomb.druid.blocks.MenuItem

action - Variable in class org.catacomb.druid.blocks.RadioButtons

action - Variable in class org.catacomb.druid.blocks.ScrollingCheckboxList

action - Variable in class org.catacomb.druid.blocks.ScrollingInfoPanel

action - Variable in class org.catacomb.druid.blocks.ScrollingList

action - Variable in class org.catacomb.druid.blocks.SimpleSlider

action - Variable in class org.catacomb.druid.blocks.Slider

action - Variable in class org.catacomb.druid.blocks.TextArea

action - Variable in class org.catacomb.druid.blocks.TextField

action - Variable in class org.catacomb.druid.blocks.ToggleList

action - Variable in class org.catacomb.druid.blocks.TreePanel

action - Variable in class org.catacomb.druid.build.ContingencyGroup

action(String) - Method in class org.catacomb.druid.gui.base.DruActionRelay

action - Variable in class org.catacomb.druid.gui.base.DruListClickActor

action() - Method in class org.catacomb.druid.gui.edit.DruGCPanel

action(boolean) - Method in class org.catacomb.druid.gui.edit.DruGCPanel

action(String) - Method in class org.catacomb.druid.gui.edit.DruGCPanel

action(double) - Method in class org.catacomb.druid.gui.edit.DruGCPanel

action(int) - Method in class org.catacomb.druid.gui.edit.DruGCPanel

action(Object) - Method in class org.catacomb.druid.gui.edit.DruGCPanel

action(String, String) - Method in class org.catacomb.druid.gui.edit.DruGCPanel

action - Variable in class org.catacomb.graph.gui.IconButton

action - Variable in class org.catacomb.graph.gui.IconRadioButton

action(String) - Method in interface org.catacomb.interlish.structure.ActionRelay

action - Variable in class org.textensor.stochdiff.model.SDRun

actionB(String, boolean) - Method in class org.catacomb.druid.gui.base.DruActionRelay

actionB(String, boolean) - Method in interface org.catacomb.interlish.structure.ActionRelay

actionCommand - Variable in class org.catacomb.druid.swing.DBaseButton

actionCommand - Variable in class org.catacomb.druid.swing.DCheckbox

actionCommand - Variable in class org.catacomb.druid.swing.DCheckboxMenuItem

actionCommand - Variable in class org.catacomb.druid.swing.DImageButton

actionCommand - Variable in class org.catacomb.druid.swing.DMenuItem

actionConnect(Object) - Method in class org.catacomb.druid.gui.base.PanelPack

actionD(String, double) - Method in class org.catacomb.druid.gui.base.DruActionRelay

actionD(String, double) - Method in interface org.catacomb.interlish.structure.ActionRelay

actionI(String, int) - Method in class org.catacomb.druid.gui.base.DruActionRelay

actionI(String, int) - Method in interface org.catacomb.interlish.structure.ActionRelay

ActionManager - Class in org.catacomb.interlish.service

ActionManager() - Constructor for class org.catacomb.interlish.service.ActionManager

actionMode - Variable in class org.catacomb.graph.gui.BoxSelectionHandler

actionMode - Variable in class org.catacomb.graph.gui.ClickZoomHandler

actionMode - Variable in class org.catacomb.graph.gui.PanHandler

actionMode - Variable in class org.catacomb.graph.gui.RollHandler

actionMode - Variable in class org.catacomb.graph.gui.TurntableHandler

actionNames - Static variable in class org.catacomb.graph.arbor.SegmentGraphVE

actionO(String, Object) - Method in class org.catacomb.druid.gui.base.DruActionRelay

actionO(String, Object) - Method in interface org.catacomb.interlish.structure.ActionRelay

actionPerformed(ActionEvent) - Method in class org.catacomb.druid.swing.DButton

actionPerformed(ActionEvent) - Method in class org.catacomb.druid.swing.DCheckbox

actionPerformed(ActionEvent) - Method in class org.catacomb.druid.swing.DCheckboxMenuItem

actionPerformed(ActionEvent) - Method in class org.catacomb.druid.swing.DChoice

actionPerformed(ActionEvent) - Method in class org.catacomb.druid.swing.DComboBox

actionPerformed(ActionEvent) - Method in class org.catacomb.druid.swing.DImageButton

actionPerformed(ActionEvent) - Method in class org.catacomb.druid.swing.DMenuItem

actionPerformed(ActionEvent) - Method in class org.catacomb.druid.swing.DRadioButtons

actionPerformed(ActionEvent) - Method in class org.catacomb.druid.swing.DToggleButton

actionPerformed(ActionEvent) - Method in class org.catacomb.druid.swing.DValueHistory

actionPerformed(ActionEvent) - Method in class org.catacomb.graph.gui.GraphContextMenu.GCMHandler

actionPerformed(ActionEvent) - Method in class org.catacomb.graph.gui.IconButton

actionPerformed(ActionEvent) - Method in class org.catacomb.graph.gui.IconRadioButton

actionPerformed(ActionEvent) - Method in class org.textensor.vis.SceneGraphViewer

actionRelay - Variable in class org.catacomb.druid.gui.base.DruFrame

actionRelay - Variable in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

actionRelay - Variable in class org.catacomb.druid.gui.edit.DruGCPanel

actionRelay - Variable in class org.catacomb.druid.gui.edit.DruMenu

actionRelay - Variable in class org.catacomb.druid.gui.edit.DruMenuItem

ActionRelay - Interface in org.catacomb.interlish.structure

actionS(String, String) - Method in class org.catacomb.druid.gui.base.DruActionRelay

actions - Variable in class org.catacomb.druid.swing.dnd.RegionStore

actionS(String, String) - Method in interface org.catacomb.interlish.structure.ActionRelay

ActionSource - Interface in org.catacomb.interlish.structure

activate() - Method in class org.catacomb.graph.gui.BoxSelectionHandler

activate() - Method in class org.catacomb.graph.gui.ClickZoomHandler

activate() - Method in class org.catacomb.graph.gui.MouseHandler

activate() - Method in class org.catacomb.graph.gui.PanHandler

activate() - Method in class org.catacomb.graph.gui.RollHandler

activate() - Method in class org.catacomb.graph.gui.TurntableHandler

activateIn() - Method in class org.catacomb.graph.gui.ClickZoomHandler

activateInOut() - Method in class org.catacomb.graph.gui.ClickZoomHandler

activateOut() - Method in class org.catacomb.graph.gui.ClickZoomHandler

active - Variable in class org.catacomb.druid.swing.dnd.RegionStore

active - Variable in class org.catacomb.graph.gui.HoverTimer

active - Variable in class org.catacomb.graph.gui.MouseHandler

activeArea - Variable in class org.catacomb.numeric.difnet.model.BasicStructureLink

activeBorder - Variable in class org.catacomb.druid.swing.RolloverEffect

activeBorder - Variable in class org.catacomb.graph.gui.RolloverEffect

activeFont - Variable in class org.catacomb.druid.xtext.canvas.FontStore

activeHandler - Variable in class org.catacomb.graph.gui.Mouse

activeLims - Variable in class org.catacomb.druid.swing.dnd.RegionStore

activePick - Variable in class org.catacomb.graph.gui.PickHandler

activeRegion(int, int) - Method in class org.catacomb.druid.swing.dnd.RegionStore

activeTag - Variable in class org.catacomb.druid.swing.dnd.RegionStore

activeTI - Variable in class org.catacomb.druid.swing.DCheckboxList

activeType - Variable in class org.catacomb.numeric.difnet.CellPoint

actor - Variable in class org.catacomb.druid.gui.base.DruActionRelay

acyclic - Variable in class org.catacomb.numeric.difnet.calc.OrderedNetMap

adat - Variable in class org.catacomb.numeric.data.VectorSet

add(MethodStub) - Method in class org.catacomb.act.ScriptStubs

add(Position) - Method in class org.catacomb.be.Position

add(SpriteData) - Method in class org.catacomb.datalish.SpriteStore

add(Object) - Method in class org.catacomb.dataview.build.CompoundView

add(Object) - Method in class org.catacomb.dataview.build.DataPlot

add(Object) - Method in class org.catacomb.dataview.build.Dataview

add(Object) - Method in class org.catacomb.dataview.model.LineGraph

add(Object) - Method in class org.catacomb.druid.blocks.AbstractButton

add(Object) - Method in class org.catacomb.druid.blocks.Application

add(Object) - Method in class org.catacomb.druid.blocks.AutonomousDialog

add(Object) - Method in class org.catacomb.druid.blocks.AutonomousPanel

add(Object) - Method in class org.catacomb.druid.blocks.BorderPanel

add(Object) - Method in class org.catacomb.druid.blocks.Checkbox

add(Object) - Method in class org.catacomb.druid.blocks.Choice

add(Object) - Method in class org.catacomb.druid.blocks.CollapsiblePanel

add(Object) - Method in class org.catacomb.druid.blocks.Dialog

add(Object) - Method in class org.catacomb.druid.blocks.EditorWindow

add(Object) - Method in class org.catacomb.druid.blocks.Frame

add(Object) - Method in class org.catacomb.druid.blocks.ImageLabel

add(Object) - Method in class org.catacomb.druid.blocks.KitPanel

add(Object) - Method in class org.catacomb.druid.blocks.LabelledTextField

add(Object) - Method in class org.catacomb.druid.blocks.List

add(Object) - Method in class org.catacomb.druid.blocks.Menu

add(Object) - Method in class org.catacomb.druid.blocks.MenuBar

add(Object) - Method in class org.catacomb.druid.blocks.MultiPanel

add(Object) - Method in class org.catacomb.druid.blocks.PanelDesigns

add(Object) - Method in class org.catacomb.druid.blocks.ScrollingCheckboxList

add(Object) - Method in class org.catacomb.druid.blocks.ScrollingList

add(Object) - Method in class org.catacomb.druid.blocks.ScrollPanel

add(Object) - Method in class org.catacomb.druid.blocks.SinglePanelContainer

add(Object) - Method in class org.catacomb.druid.blocks.TreePanel

add(GroupContingent) - Method in class org.catacomb.druid.build.ContingencyGroup

add() - Method in class org.catacomb.druid.gui.edit.ExpandingTextAreaController

add(Object) - Method in class org.catacomb.graph.drawing.FixedDrawing

add(V) - Method in class org.catacomb.interlish.content.KeyedList

add(V) - Method in class org.catacomb.interlish.content.KeyedMultiList

add(String, V) - Method in class org.catacomb.interlish.content.KeyedMultiList

add(V, double) - Method in class org.catacomb.interlish.content.QuantityList

add(Object) - Method in interface org.catacomb.interlish.structure.AddableTo

add(NumDataSet) - Method in class org.catacomb.numeric.data.DataSetArray

add(double) - Method in class org.catacomb.numeric.data.DVector

add(Integer) - Method in class org.catacomb.numeric.data.IntegerArray

add(Object) - Method in class org.catacomb.numeric.data.NumDataSet

add(NumDataItem) - Method in class org.catacomb.numeric.data.NumDataStore

add(double) - Method in class org.catacomb.numeric.math.Matrix

add(Matrix) - Method in class org.catacomb.numeric.math.Matrix

add(File) - Method in class org.catacomb.serial.jar.CustomJarWriter

add(String, Object) - Method in class org.catacomb.serial.jar.CustomJarWriter

add(Element) - Method in class org.catacomb.serial.quickxml.Element

add(String) - Method in class org.catacomb.serial.quickxml.Element

add(DirRef) - Method in class org.catacomb.util.DirRef

add(FileRef) - Method in class org.catacomb.util.DirRef

add(File) - Method in class org.catacomb.util.FileAccumulator

add(Object) - Method in class org.catacomb.util.StandardColors

add(Position) - Method in class org.textensor.stochdiff.geom.GPosition

add(Vector) - Method in class org.textensor.stochdiff.geom.GVector

add(Object) - Method in interface org.textensor.stochdiff.inter.AddableTo

add(Object) - Method in class org.textensor.stochdiff.model.ConcentrationSet

add(Object) - Method in class org.textensor.stochdiff.model.Discretization

add(Object) - Method in class org.textensor.stochdiff.model.FitConstraints

add(Object) - Method in class org.textensor.stochdiff.model.InitialConditions

add(Object) - Method in class org.textensor.stochdiff.model.Morphology

add(Object) - Method in class org.textensor.stochdiff.model.OutputScheme

add(Object) - Method in class org.textensor.stochdiff.model.OutputSet

add(Object) - Method in class org.textensor.stochdiff.model.Reaction

add(Object) - Method in class org.textensor.stochdiff.model.ReactionScheme

add(Object) - Method in class org.textensor.stochdiff.model.SpecieIDList

add(Object) - Method in class org.textensor.stochdiff.model.SpineType

add(Object) - Method in class org.textensor.stochdiff.model.StimulationSet

add(Object) - Method in class org.textensor.stochdiff.model.SurfaceDensitySet

add(Object) - Method in class org.textensor.stochdiff.neuroml.cell

add(Object) - Method in class org.textensor.stochdiff.neuroml.meta

add(Object) - Method in class org.textensor.stochdiff.neuroml.morphml

add(Object) - Method in class org.textensor.stochdiff.neuroml.MorphMLCableGroup

add(Object) - Method in class org.textensor.stochdiff.neuroml.segment

add(double) - Method in class org.textensor.stochdiff.numeric.math.Matrix

add(Matrix) - Method in class org.textensor.stochdiff.numeric.math.Matrix

add(TriangleStrip) - Method in class org.textensor.stochdiff.numeric.morph.TrianglesSet

add2DPickableRegionOn3DPoint(Pickable, double, double, double, int, int, int, int) - Method in class org.catacomb.graph.gui.Builder

add3DPickablePoint(double, double, double, PickablePoint) - Method in class org.catacomb.graph.gui.Builder

AddableTo - Interface in org.catacomb.interlish.structure

AddableTo - Interface in org.textensor.stochdiff.inter

addActionListener(ActionListener) - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

addAll(ArrayList<Related>) - Method in class org.catacomb.druid.util.tree.RelationTree

addAll(ArrayList<Related>, SingleParent) - Static method in class org.catacomb.druid.util.tree.Trawler

addAll(ArrayList<V>) - Method in class org.catacomb.interlish.content.KeyedList

addAlphabeticizedSubsetted(String[]) - Method in class org.catacomb.druid.swing.DPopLabel

addAnonymousComponent(Object, String) - Method in class org.catacomb.druid.build.GUIStore

addArgument(String, String) - Method in class org.catacomb.act.MethodSignature

addArrowString(double, double, String) - Method in class org.catacomb.dataview.Plot

addArrowString(double, double, Color, String) - Method in class org.catacomb.dataview.Plot

addAttribute(String, String) - Method in interface org.catacomb.interlish.structure.AttributeAddableTo

addAttribute(Element, String, String) - Method in interface org.catacomb.interlish.structure.ElementFactory

addAttribute(Element, String, double) - Method in interface org.catacomb.interlish.structure.ElementFactory

addAttribute(String, String) - Method in class org.catacomb.serial.om.OmElement

addAttribute(Attribute) - Method in class org.catacomb.serial.om.OmElement

addAttribute(Element, String, String) - Method in class org.catacomb.serial.om.OmElementFactory

addAttribute(Element, String, double) - Method in class org.catacomb.serial.om.OmElementFactory

addAttribute(OmElement, String, String) - Method in class org.catacomb.serial.om.OmWriter

addAttribute(OmElement, String, double) - Method in class org.catacomb.serial.om.OmWriter

addBlock(Block) - Method in class org.catacomb.druid.xtext.base.ContainerBlock

addBoard(RegionBoard) - Method in class org.catacomb.druid.xtext.canvas.BoardRepainterDMItem

addBodyCaseRelay(String, String, String) - Method in class org.catacomb.act.MethodSignature

addBodyElement(OmElement, String, String) - Method in class org.catacomb.serial.om.OmWriter

addBorder(int, int, int, int) - Method in class org.catacomb.druid.gui.base.DruPanel

addBorder(int, int, int, int) - Method in class org.catacomb.druid.swing.DPanel

addBorder(Border) - Method in class org.catacomb.druid.swing.DPanel

addCardPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruPanel

addCardPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruSubcontainerPanel

addCase(String, String) - Method in class org.catacomb.act.CaseRelayBody

addCenter(DruPanel) - Method in class org.catacomb.druid.gui.base.DruBorderPanel

addCenter(DruLabel) - Method in class org.catacomb.druid.gui.base.DruBorderPanel

addChangeListener(ChangeListener) - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

addChangeNotifiable(ChangeNotifiable) - Method in interface org.catacomb.interlish.structure.ChangeNotifier

addCheckboxItem(String, boolean) - Method in class org.catacomb.druid.swing.DPopLabel

addChild(ArrayListNode) - Method in class org.catacomb.druid.util.tree.ArrayListNode

addChild(ArrayListNode) - Method in class org.catacomb.druid.util.tree.RelationNode

addChild(TreeNode) - Method in class org.catacomb.util.StringTree

addChildController(Controller) - Method in class org.catacomb.graph.drawing.IconEditorController

addClasspathManifest(DecManifest) - Method in class org.catacomb.druid.load.XMLStore

addClickAction(DruListClickActor) - Method in class org.catacomb.druid.gui.edit.DruListPanel

addClickAction(DruListClickActor) - Method in class org.catacomb.druid.gui.edit.DruScrollingCheckboxListPanel

addClickRegion(int[], Object, String) - Method in class org.catacomb.druid.swing.dnd.RegionBoard

addColorTable(ColorTable) - Method in class org.catacomb.graph.gui.DisplayStylesData

addComponent(Object, GUIPath) - Method in class org.catacomb.druid.build.Context

addComponent(String, Object) - Method in class org.catacomb.druid.build.DruidTargetStore

addComponent(Object, GUIPath) - Method in class org.catacomb.druid.build.GUIStore

addConsumer(String, Consumer, String) - Method in class org.catacomb.druid.market.HookupBoard

addConsumer(Consumer, String) - Method in class org.catacomb.druid.market.ProducerConsumerBoard

addConsumer(String, Consumer, String) - Method in interface org.catacomb.interlish.structure.Marketplace

addContentPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruCollapsiblePanel

addController(ArrayList<Controller>, Controller) - Method in class org.catacomb.druid.build.Druid

addCopyOfType(XType) - Method in class org.catacomb.druid.xtext.data.XType

addCurrentStim(String, String, String, ScalarFunction) - Method in class org.catacomb.numeric.difnet.model.BasicNetStim

addDataSet(NumDataSet) - Method in class org.catacomb.numeric.data.DataExtractor

addDataSet(NumDataSet) - Method in class org.catacomb.numeric.data.NumDataSet

addDataWatcher(DataWatcher) - Method in class org.catacomb.numeric.data.NumDataStore

addDComponent(DComponent) - Method in class org.catacomb.druid.gui.base.DruPanel

addDComponent(DComponent, Object) - Method in class org.catacomb.druid.gui.base.DruPanel

addDComponent(DComponent) - Method in class org.catacomb.druid.gui.base.DruSubcontainerPanel

addDComponent(DComponent, Object) - Method in class org.catacomb.druid.gui.base.DruSubcontainerPanel

addDComponent(DComponent) - Method in class org.catacomb.druid.swing.DBoxPanel

addDComponent(DComponent) - Method in class org.catacomb.druid.swing.DPanel

addDComponent(DComponent, Object) - Method in class org.catacomb.druid.swing.DPanel

addDefaultConstructor(String) - Method in class org.catacomb.act.Classdef

addDefaultConstructor() - Method in class org.catacomb.act.Classdef

addDependent(Dependent, Supplier) - Method in class org.catacomb.druid.market.SupplyAgent

addDependent(Dependent) - Method in class org.catacomb.druid.market.SupplyClerk

addDependent(Dependent) - Method in interface org.catacomb.interlish.structure.Supplier

addDItem(DComponent) - Method in class org.catacomb.druid.swing.DFormPanel

addDots(double[], double[], Color) - Method in class org.catacomb.dataview.Plot

addDragOrDropRegion(int[], Object, String) - Method in class org.catacomb.druid.swing.dnd.RegionBoard

addDragRegion(int[], Object, String) - Method in class org.catacomb.druid.swing.dnd.RegionBoard

addDropRegion(int[], Object, String) - Method in class org.catacomb.druid.swing.dnd.RegionBoard

addEast(DruPanel) - Method in class org.catacomb.druid.gui.base.DruBorderPanel

addEast(DruLabel) - Method in class org.catacomb.druid.gui.base.DruBorderPanel

addEffect(Effect) - Method in class org.catacomb.druid.gui.edit.DruButton

addElement(String, String) - Method in class org.catacomb.druid.load.Settings

addElement(Element, Object) - Method in interface org.catacomb.interlish.structure.ElementFactory

addElement(Element) - Method in class org.catacomb.serial.om.OmElement

addElement(Element, Object) - Method in class org.catacomb.serial.om.OmElementFactory

addElement(String, String) - Method in class org.catacomb.serial.quickxml.Element

addElement(String, String, String) - Method in class org.catacomb.serial.quickxml.Element

addElement(Element) - Method in class org.catacomb.serial.quickxml.Element

addElements(ArrayList<VolumeElement>) - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

addElementsFrom(String) - Method in class org.catacomb.serial.quickxml.Element

addEnumOption(String, int) - Method in class org.catacomb.act.FieldSignature

AdderTo - Interface in org.catacomb.interlish.structure

addEtchedBorder(Color) - Method in class org.catacomb.druid.gui.base.DruPanel

addEtchedBorder(Color) - Method in class org.catacomb.druid.swing.DPanel

addEvent(double, int) - Method in class org.catacomb.numeric.data.EventSequence

addEvent(String, double, int) - Method in class org.catacomb.numeric.data.NumDataStore

addExtensionFilter(String, String) - Method in class org.catacomb.druid.swing.DFileChooser

addExtensionFilter(String, String) - Method in class org.catacomb.druid.util.FileChooser

addField(FieldSignature) - Method in class org.catacomb.act.Classdef

addFile(String, File) - Method in class org.catacomb.druid.manifest.DecManifest

addFilesFrom(File, String) - Method in class org.catacomb.druid.manifest.DecManifest

addFileSystemManifest(DecManifest, File) - Method in class org.catacomb.druid.load.DruidContentLoader

addFileSystemManifest(DecManifest, File) - Method in class org.catacomb.druid.load.XMLStore

addFloatValued(ArrayList<FloatValued>) - Method in class org.textensor.stochdiff.model.ConcentrationSet

addFloatValued(ArrayList<FloatValued>) - Method in class org.textensor.stochdiff.model.SurfaceDensitySet

addFocusListener(FocusListener) - Method in interface org.catacomb.interlish.structure.FocusSource

addFrame(BufferedImage) - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Adds next GIF frame.

addFromScaledShape(Shape, Position, double) - Method in class org.catacomb.graph.drawing.FixedDrawing

addFromTokens(StringTokenizer) - Method in class org.catacomb.util.StringTree

addGetSetField(String, String) - Method in class org.catacomb.act.Classdef

addGetter() - Method in class org.catacomb.act.FieldSignature

addGlue() - Method in class org.catacomb.druid.gui.base.DruBoxPanel

addGlue() - Method in class org.catacomb.druid.gui.base.DruFloatBoxPanel

addGlue() - Method in class org.catacomb.druid.swing.DBoxPanel

addHandler(MouseHandler) - Method in class org.catacomb.graph.gui.Mouse

addHandler(MouseHandler) - Method in class org.catacomb.graph.gui.WorldCanvas

addHierarchical(String[], boolean) - Method in class org.catacomb.druid.swing.DPopLabel

addHierarchical(String[]) - Method in class org.catacomb.druid.swing.DPopLabel

addHorizontalStrut(int) - Method in class org.catacomb.druid.swing.DBoxPanel

addIDdComponent(Object, String) - Method in class org.catacomb.druid.build.GUIStore

addIfNew(HashSet<Related>, Related) - Static method in class org.catacomb.druid.util.tree.Trawler

addIfNew(XType) - Method in class org.catacomb.druid.xtext.data.XTypeStore

addIfNew(XRelationType) - Method in class org.catacomb.druid.xtext.data.XTypeStore

addIfNew(ArrayList<DataView>) - Method in class org.catacomb.graph.gui.ViewSet

addIfNew(File) - Method in class org.catacomb.util.FileAccumulator

addImage(String, String) - Method in class org.catacomb.druid.gui.base.DruImageLabelPanel

addImplements(String) - Method in class org.catacomb.act.Classdef

addImplementsName(String) - Method in class org.catacomb.act.Classdef

addImport(Object) - Method in class org.catacomb.act.Classdef

addInfoFrom(Element, String) - Method in class org.catacomb.druid.manifest.DecManifest

addInfoLog(InfoLog) - Method in class org.catacomb.druid.gui.edit.DruLogPanel

addInfoLog(InfoLog) - Method in interface org.catacomb.interlish.structure.LogDisplay

addInfoMessage(InfoMessage) - Method in class org.catacomb.druid.guimodel.Log

addInfoMessage(int, String, String) - Method in class org.catacomb.druid.guimodel.Log

addInfoMessage(InfoMessage) - Method in interface org.catacomb.interlish.structure.InfoLog

addInfoMessage(int, String, String) - Method in interface org.catacomb.interlish.structure.InfoLog

addInitialGraph() - Method in class org.catacomb.graph.arbor.SegmentGraph

addItem(DruMenuItem) - Method in class org.catacomb.druid.gui.edit.DruMenu

addItem(DruCheckboxMenuItem) - Method in class org.catacomb.druid.gui.edit.DruMenu

addItem(String) - Method in class org.catacomb.druid.gui.edit.DruMenu

addItem(String, String) - Method in class org.catacomb.druid.gui.edit.DruMenu

addItem(String) - Method in class org.catacomb.druid.swing.DPopLabel

addItem(String, boolean) - Method in class org.catacomb.druid.swing.DPopLabel

addItem(XType, String) - Method in class org.catacomb.druid.xtext.data.PageDataStore

addItem(XItem) - Method in class org.catacomb.druid.xtext.data.PageDataStore

addItem(V) - Method in class org.catacomb.interlish.content.KeyedList

addItemListener(ItemListener) - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

addItems(ArrayList<Displayable>) - Method in class org.catacomb.dataview.formats.PolyLineHandler

addItems(DruMenu, Context, GUIPath) - Method in class org.catacomb.druid.blocks.Menu

addItems(String[]) - Method in class org.catacomb.druid.swing.DPopLabel

addJavaSource(String, String) - Method in class org.catacomb.util.FileAccumulator

addJavaSourceSiblings(String, String) - Method in class org.catacomb.util.FileAccumulator

addKey(String) - Method in class org.catacomb.interlish.content.KeyedList

addLayoutComponent(Component, Object) - Method in class org.catacomb.druid.swing.split.SplitterLayout

Adds a component w/ constraints to the layout.

addLayoutComponent(String, Component) - Method in class org.catacomb.druid.swing.split.SplitterLayout

Adds a component w/ a String constraint to the layout.

addLengthenedRegion(int[], Object) - Method in class org.catacomb.druid.swing.dnd.RegionBoard

addLengthenedRegion(int[], Object) - Method in class org.catacomb.druid.swing.dnd.RegionStore

addLine(double[], double[], Color) - Method in class org.catacomb.dataview.Plot

addLine(double[][], Color) - Method in class org.catacomb.dataview.Plot

addLine(double[], double[], Color, String) - Method in class org.catacomb.dataview.Plot

addLine() - Method in class org.catacomb.druid.gui.edit.DruListPanel

addLine() - Method in class org.catacomb.druid.swing.DList

addLine() - Method in class org.catacomb.druid.swing.DTextArea

addLink(NetMapLink[], NetMapLink) - Method in class org.catacomb.numeric.difnet.calc.OrderedNetMap

addListWatcher(ListWatcher) - Method in class org.catacomb.interlish.content.KeyedList

addMain(String) - Method in class org.catacomb.serial.jar.CustomJarWriter

addMain(File) - Method in class org.catacomb.serial.jar.CustomJarWriter

addMarker(String, Position) - Method in class org.catacomb.datalish.SpriteData

addMenu(Menu) - Method in class org.catacomb.druid.blocks.MenuBar

addMenu(DruMenu) - Method in class org.catacomb.druid.gui.base.DruMenuBar

addMenu(DruMenu) - Method in class org.catacomb.druid.gui.base.DruPanel

addMenu(DruMenu) - Method in class org.catacomb.druid.gui.base.DruSubcontainerPanel

addMenuItem(MenuItem) - Method in class org.catacomb.druid.blocks.Menu

addMenuOptions(String[]) - Method in class org.catacomb.druid.swing.DPopLabel

addMetaItem(MetaItem) - Method in class org.textensor.stochdiff.neuroml.cable

addMetaItem(MetaItem) - Method in class org.textensor.stochdiff.neuroml.cell

addMetaItem(MetaItem) - Method in interface org.textensor.stochdiff.neuroml.MetaContainer

addMetaItem(MetaItem) - Method in class org.textensor.stochdiff.neuroml.MetaItem

addMetaItem(MetaItem) - Method in class org.textensor.stochdiff.neuroml.MorphMLProperties

addMethod(MethodSignature) - Method in class org.catacomb.act.Classdef

addMimetype(String) - Method in class org.catacomb.serial.jar.CustomJarWriter

addModeSettable(ModeSettable) - Method in class org.catacomb.druid.chunk.MouseModeController

addModeSettable(ModeSettable) - Method in interface org.catacomb.interlish.structure.ModeController

addMouseListener(MouseListener) - Method in class org.catacomb.druid.swing.TristateCheckBox

No one may add mouse listeners, not even Swing!

addNeighbor(SegmentGraphPoint) - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

addNeighbor(CellPoint) - Method in class org.catacomb.numeric.difnet.CellPoint

addNeighbor(MeshPoint) - Method in class org.catacomb.numeric.mesh.DifMeshPoint

addNeighbor(MeshPoint) - Method in interface org.catacomb.numeric.mesh.MeshPoint

addNeighbor(MorphPoint) - Method in class org.textensor.stochdiff.model.MorphPoint

addNeighbor(TreePoint) - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

addNewPoint(double, double, SegmentGraphPoint) - Method in class org.catacomb.graph.arbor.SegmentGraph

addNewPuncBlockAfter(TextBlock, char) - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

addNewWordBlockAfter(TextBlock, char) - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

addNormals(ArrayList<float[]>) - Method in class org.textensor.stochdiff.numeric.morph.TriangleStrip

addNorth(DruPanel) - Method in class org.catacomb.druid.gui.base.DruBorderPanel

addNorth(DruLabel) - Method in class org.catacomb.druid.gui.base.DruBorderPanel

addNVPair(NVPair) - Method in class org.catacomb.serial.xml.NVPair

addObserver(Observer) - Method in interface org.catacomb.interlish.structure.Observable

addOffsetChild(MorphPoint) - Method in class org.textensor.stochdiff.model.MorphPoint

addOffsetChild(TreePoint) - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

addOptions(ArrayList<String>) - Method in class org.catacomb.druid.swing.DPopLabel

addPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruCardPanel

addPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruFloatBoxPanel

addPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruLeftRightSplitPanel

addPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruMultiSplitPanel

addPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruPanel

addPanel(DruPanel, Object) - Method in class org.catacomb.druid.gui.base.DruPanel

addPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruSubcontainerPanel

addPanel(String, DruPanel) - Method in class org.catacomb.druid.gui.base.DruSubcontainerPanel

addPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruTabbedPanel

addPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruUpDownSplitPanel

addPath(String) - Method in class org.catacomb.druid.load.DruidResourceLoader

addPath(String) - Static method in class org.catacomb.interlish.reflect.ReflectionConstructor

addPerformer(String, Performer) - Method in class org.catacomb.interlish.service.ActionManager

addPeriodicSquarePulse(String, double[], double, double, double, double) - Method in class org.textensor.stochdiff.numeric.chem.StimulationTable

addPickablePoint(PickablePoint) - Method in class org.catacomb.graph.gui.Builder

addPickablePoint(PickablePoint, Position) - Method in class org.catacomb.graph.gui.Builder

addPickableRegion(PickableRegion) - Method in class org.catacomb.graph.gui.Builder

addPickableRegion(Pickable, int, int, int, int) - Method in class org.catacomb.graph.gui.Builder

addPickableRegion(PickableRegion, int, int) - Method in class org.catacomb.graph.gui.PickStore

addPlacement(String, Placement) - Method in class org.catacomb.datalish.SceneConfig

addPlacement(String, Placement) - Method in class org.catacomb.numeric.data.SceneBlock

addPoint(SegmentGraphPoint) - Method in class org.catacomb.graph.arbor.SegmentGraph

addPoint(int, double, double) - Method in class org.catacomb.graph.drawing.Shape

addPoint(int, ShapePoint) - Method in class org.catacomb.graph.drawing.Shape

addPoint(PickablePoint) - Method in class org.catacomb.graph.gui.Builder

addPoint(PickablePoint, int, int) - Method in class org.catacomb.graph.gui.PickStore

addPoint(Pickable, int, int, int, int) - Method in class org.catacomb.graph.gui.PickStore

addPoint(double) - Method in class org.catacomb.numeric.data.DoubleArray

addPoint(DifMeshPoint) - Method in class org.catacomb.numeric.mesh.DifMeshBuilder

addPoint(double, double, double, double, double, double) - Method in class org.textensor.stochdiff.numeric.morph.TriangleStrip

addPoints(double[], double[], Color) - Method in class org.catacomb.dataview.Plot

addPolygon(double[][], Color) - Method in class org.catacomb.dataview.Plot

addPolygon(double[], double[], Color) - Method in class org.catacomb.dataview.Plot

addPositions(ArrayList<float[]>) - Method in class org.textensor.stochdiff.numeric.morph.TriangleStrip

addPotentialRecorder(String, String, String) - Method in class org.catacomb.numeric.difnet.model.BasicNetRecorder

addPreComment(String) - Method in class org.catacomb.act.FieldSignature

addProducer(String, Producer, String) - Method in class org.catacomb.druid.market.HookupBoard

addProducer(Producer, String) - Method in class org.catacomb.druid.market.ProducerConsumerBoard

addProducer(String, Producer, String) - Method in interface org.catacomb.interlish.structure.Marketplace

addProperty(String) - Method in class org.catacomb.druid.xtext.data.XType

addProvider(String, Provider, String) - Method in class org.catacomb.druid.market.HookupBoard

addProvider(Provider, String) - Method in class org.catacomb.druid.market.ProducerConsumerBoard

addProvider(String, Provider, String) - Method in interface org.catacomb.interlish.structure.Marketplace

addRangeListener(RangeListener) - Method in class org.catacomb.graph.gui.WorldCanvas

addRangeListener(RangeListener) - Method in class org.catacomb.graph.gui.WorldTransform

addRangeWatcher(RangeWatcher) - Method in class org.catacomb.druid.gui.base.DruDataDisplay

addRangeWatcher(RangeWatcher) - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

addRangeWatcher(RangeWatcher) - Method in class org.catacomb.graph.gui.DataDisplay

addRangeWatcher(RangeWatcher) - Method in interface org.catacomb.interlish.structure.GraphicsView

addRasterRow(double[], double[], double, double, double, double) - Method in class org.catacomb.dataview.Plot

addRaw(JPanel) - Method in class org.catacomb.druid.gui.base.DruBorderPanel

addRaw(JPanel, Object) - Method in class org.catacomb.druid.gui.base.DruPanel

addRealize(SegmentGraphPoint) - Method in class org.catacomb.graph.arbor.SegmentGraph

addRealizer(Realizer) - Method in class org.catacomb.druid.gui.base.DruKitPanel

addReceiver(String, Receiver, String) - Method in class org.catacomb.druid.market.HookupBoard

addReceiver(Receiver, String) - Method in class org.catacomb.druid.market.ProducerConsumerBoard

addReceiver(String, Receiver, String) - Method in interface org.catacomb.interlish.structure.Marketplace

addRecentFile(File) - Method in class org.catacomb.druid.load.DruidAppBase

addRecentFile(File) - Method in class org.catacomb.druid.load.Settings

addRecentFile(File) - Static method in class org.catacomb.interlish.service.AppPersist

addRecentFile(File) - Method in interface org.catacomb.interlish.service.AppPersistProvider

addRecentPath(String) - Method in class org.catacomb.druid.load.Settings

addReferent(String, Object) - Method in class org.catacomb.serial.SerializationContext

addRegion(int, int, int, int, Object, String) - Method in class org.catacomb.druid.swing.dnd.RegionBoard

addRegion(int, int, int, int, Object, String, int) - Method in class org.catacomb.druid.swing.dnd.RegionBoard

addRegion(int[], Object, String, int) - Method in class org.catacomb.druid.swing.dnd.RegionStore

addRegion(int, int, int, int, Object, String, int) - Method in class org.catacomb.druid.swing.dnd.RegionStore

addRelation(XRelation) - Method in class org.catacomb.druid.xtext.data.PageDataStore

addRelationship(Related, String) - Method in class org.catacomb.druid.util.examples.TreeItem

addRelationType(XRelationType) - Method in class org.catacomb.druid.xtext.data.XTypeStore

addResource(Element, DecFile) - Method in class org.catacomb.druid.manifest.DecManifest

addResponse(String, String) - Method in class org.catacomb.druid.gui.edit.IconSwitcher

addRole(Role) - Method in class org.catacomb.druid.load.RoleMap

addRoles(DecManifest) - Method in class org.catacomb.druid.load.RoleMap

addRow(double[]) - Method in class org.catacomb.numeric.data.DataTable

addRow(FloatRow) - Method in class org.catacomb.numeric.data.VectorSet

addScalar(String, String) - Method in class org.catacomb.numeric.data.NumDataSet

addScalar(FloatScalar) - Method in class org.catacomb.numeric.data.NumDataSet

addScriptSource(Object, ScriptSource) - Method in class org.catacomb.interlish.service.ScriptManager

addSearchPackage(String) - Method in class org.catacomb.interlish.reflect.ReflectionConstructor

addSearchPackage(String) - Method in class org.textensor.xml.ReflectionInstantiator

addSelectionPaths(TreePath[]) - Method in class org.catacomb.druid.swing.CheckTreeSelectionModel

addSeparator() - Method in class org.catacomb.druid.gui.edit.DruMenu

addSeparator() - Method in class org.catacomb.druid.swing.DPopLabel

addSetter() - Method in class org.catacomb.act.FieldSignature

addSingle(Object) - Method in class org.catacomb.druid.swing.DPanel

addSingle(Object) - Method in class org.catacomb.druid.swing.DToolablePanel

addSingleDComponent(DComponent) - Method in class org.catacomb.druid.gui.base.DruPanel

addSmallPoints(double[], double[], Color) - Method in class org.catacomb.dataview.Plot

addSortedLine(double[], double[], Color) - Method in class org.catacomb.dataview.Plot

addSource(DecFile) - Method in class org.catacomb.druid.load.XMLStore

addSouth(DruPanel) - Method in class org.catacomb.druid.gui.base.DruBorderPanel

addSouth(DruLabel) - Method in class org.catacomb.druid.gui.base.DruBorderPanel

addSpinesTo(VolumeGrid) - Method in class org.textensor.stochdiff.disc.SpineLocator

addSpineTo(VolumeElement, SpineProfile, String, int) - Method in class org.textensor.stochdiff.disc.SpineLocator

addSprite(SpriteData) - Method in class org.catacomb.numeric.data.NumDataStore

addSpritePart(double[], double[], double, SColor, SColor, int) - Method in class org.catacomb.datalish.SpriteData

addSquarePulse(String, double[], double, double) - Method in class org.textensor.stochdiff.numeric.chem.StimulationTable

addStackSlices(BlockStack, ArrayList<NumDataItem>, Object) - Method in class org.catacomb.numeric.data.NDSAccessor

addStateListener(StateListener) - Method in class org.catacomb.druid.gui.base.DruPseudoCardPanel

addStraightLine(double, double, double, double) - Method in class org.catacomb.graph.drawing.FixedDrawing

addString(double, double, String) - Method in class org.catacomb.dataview.Plot

addString(double, double, Color, String) - Method in class org.catacomb.dataview.Plot

addStringImport(String) - Method in class org.catacomb.act.Classdef

addStringSelection(String) - Method in class org.catacomb.druid.swing.DCheckboxTree

addStructureWatcher(StructureWatcher) - Method in class org.catacomb.interlish.content.QuantifiedListValue

addSubclassImports(String) - Method in class org.catacomb.act.Classdef

addSubIcon(VectorIcon, double, double, double) - Method in class org.catacomb.graph.drawing.VectorIcon

addSubMenu(DruMenu) - Method in class org.catacomb.druid.gui.edit.DruMenu

addSunkenBorder(Color) - Method in class org.catacomb.druid.gui.base.DruPanel

addSunkenBorder(Color) - Method in class org.catacomb.druid.swing.DPanel

addSuperCallConstructor() - Method in class org.catacomb.act.Classdef

addSuperCallConstructor(String) - Method in class org.catacomb.act.Classdef

addSuperCallConstructor(String, String) - Method in class org.catacomb.act.Classdef

addSupplier(String, Supplier) - Method in class org.catacomb.druid.market.HookupBoard

addSupplier(Supplier) - Method in class org.catacomb.druid.market.ProducerConsumerBoard

addSupplier(String, Supplier) - Method in interface org.catacomb.interlish.structure.Marketplace

addSynchronizee(Synchronizee) - Method in interface org.catacomb.interlish.structure.Synchronizer

addTab(String, Component) - Method in class org.catacomb.druid.swing.DTabbedPane

addTab(String, Component, String) - Method in class org.catacomb.druid.swing.DTabbedPane

addTargetWatcher(TargetWatcher) - Method in interface org.catacomb.interlish.structure.TargetReporter

addTitledBorder(String, Color) - Method in class org.catacomb.druid.gui.base.DruPanel

addTitledBorder(String, Color) - Method in class org.catacomb.druid.swing.DPanel

addTitledBorder(String, int, int, int) - Method in class org.catacomb.druid.swing.DPanel

addTo(AddableTo) - Method in class org.catacomb.druid.blocks.ChildrenOf

addTo(AddableTo) - Method in class org.catacomb.druid.blocks.PanelDesigns

addTo(AddableTo) - Method in interface org.catacomb.interlish.structure.AdderTo

addToArray(String, String) - Method in class org.catacomb.act.Classdef

addToBody(String) - Method in class org.catacomb.serial.om.OmElement

addToCache(Object) - Method in class org.catacomb.druid.build.Context

addToHM(V) - Method in class org.catacomb.interlish.content.KeyedList

addToolbar(Object) - Method in class org.catacomb.druid.swing.DToolablePanel

addToStack(RunDataBlock) - Method in class org.catacomb.numeric.data.BlockStack

addTransition(double, double) - Method in class org.catacomb.numeric.function.HoldLastScalarFunction

addTreeModelListener(TreeModelListener) - Method in class org.catacomb.druid.swing.DTreeModel

addType(String) - Method in class org.catacomb.druid.xtext.data.XType

addType(String) - Method in class org.catacomb.druid.xtext.data.XTypeStore

addType(XType) - Method in class org.catacomb.druid.xtext.data.XTypeStore

addTypeClass(TypeClass) - Method in class org.catacomb.serial.state.TypeArchive

addTypeInstance(TypeInstance) - Method in class org.catacomb.serial.state.TypeClass

addUpdatable(Updatable) - Method in interface org.catacomb.interlish.structure.Updater

addUseWatcher(UseWatcher) - Method in class org.catacomb.interlish.content.PrimitiveValue

addUtility(Object) - Method in class org.catacomb.interlish.service.ScriptManager

addValue(String) - Method in class org.catacomb.act.ArrayDeclaration

addValueWatcher(ValueWatcher) - Method in class org.catacomb.interlish.content.PrimitiveValue

addVector(FloatVector) - Method in class org.catacomb.numeric.data.NumDataSet

addVectorOrScalar(String, String) - Method in class org.catacomb.numeric.data.NumDataSet

addVectorSet(VectorSet) - Method in class org.catacomb.numeric.data.NumDataSet

addVerticalStrut(int) - Method in class org.catacomb.druid.swing.DBoxPanel

addView(ViewConfig) - Method in class org.catacomb.dataview.formats.PolyLineHandler

addView(DataView) - Method in class org.catacomb.graph.gui.ViewSet

addViewer(String, Viewer, String) - Method in class org.catacomb.druid.market.HookupBoard

addViewer(Viewer, String) - Method in class org.catacomb.druid.market.ProducerConsumerBoard

addViewer(String, Viewer, String) - Method in interface org.catacomb.interlish.structure.Marketplace

addVisible(String, Visible, String) - Method in class org.catacomb.druid.market.HookupBoard

addVisible(Visible, String) - Method in class org.catacomb.druid.market.ProducerConsumerBoard

addVisible(String, Visible, String) - Method in interface org.catacomb.interlish.structure.Marketplace

addVoltageStim(String, String, String, ScalarFunction) - Method in class org.catacomb.numeric.difnet.model.BasicNetStim

addVolumeElement(VolumeElement) - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

addWest(DruPanel) - Method in class org.catacomb.druid.gui.base.DruBorderPanel

addWest(DruLabel) - Method in class org.catacomb.druid.gui.base.DruBorderPanel

addWorldHandlers() - Method in class org.catacomb.graph.gui.WorldCanvas

adjustLabels(Box) - Method in class org.catacomb.graph.gui.Labeller

advance() - Method in class org.catacomb.dataview.FrameController

advance() - Method in class org.catacomb.dataview.gui.FramePlayerController

advance(Mouse) - Method in class org.catacomb.graph.gui.BoxSelectionHandler

advance(Mouse) - Method in class org.catacomb.graph.gui.ClickZoomHandler

advance(Mouse) - Method in class org.catacomb.graph.gui.MouseHandler

advance() - Method in class org.catacomb.graph.gui.MovieDisplay

advance(Mouse) - Method in class org.catacomb.graph.gui.PanHandler

advance(Mouse) - Method in class org.catacomb.graph.gui.PickHandler

advance(Mouse) - Method in class org.catacomb.graph.gui.RollHandler

advance(Mouse) - Method in class org.catacomb.graph.gui.TurntableHandler

advance(Mouse) - Method in class org.catacomb.graph.gui.TurnZoomHandler

advance(NetState, DiffusibleQuantity, Timestep) - Method in class org.catacomb.numeric.difnet.calc.NetDiffuser

Run the diffusion calculation for the supplied network, diffusible quantity and timestep.

advance(NetState, DiffusibleQuantity, Timestep) - Method in interface org.catacomb.numeric.difnet.DiffusionCalculator

Run the diffusion calculation for the supplied network, diffusible quantity and timestep.

advance(double) - Method in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

advance(double) - Method in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

advance() - Method in class org.textensor.stochdiff.numeric.pool.DeterministicPoolCalc

advance() - Method in class org.textensor.stochdiff.numeric.pool.ForwardEulerPoolCalc

advance() - Method in class org.textensor.stochdiff.numeric.pool.ForwardExponentialPoolCalc

advance() - Method in class org.textensor.stochdiff.numeric.pool.ImplicitEulerPoolCalc

advance() - Method in class org.textensor.stochdiff.numeric.pool.RungeKutta4PoolCalc

advance() - Method in class org.textensor.stochdiff.numeric.pool.SemiImplicitEulerPoolCalc

advance(double) - Method in class org.textensor.stochdiff.numeric.tmp.Tmp1A

advanceToFrame(int) - Method in class org.catacomb.graph.gui.MovieDisplay

advanceToFrame(int) - Method in interface org.catacomb.graph.gui.MoviePaintInstructor

advanceToFrame(int) - Method in class org.catacomb.graph.gui.SpriteMoviePainter

afv - Variable in class org.textensor.stochdiff.reduce.Reducer

algoID - Variable in class org.textensor.stochdiff.numeric.BaseCalc

algorithm - Variable in class org.textensor.stochdiff.model.SDRun

algorithmID - Variable in class org.textensor.stochdiff.model.SDRun

align - Variable in class org.catacomb.druid.blocks.DashedLine

align - Variable in class org.catacomb.druid.blocks.Label

Aligned - Interface in org.catacomb.druid.build

alignment - Variable in class org.catacomb.druid.blocks.BoxPanel

alignTop(TreePoint, TreePoint, double) - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

ALL - Static variable in class org.catacomb.serial.SerializationContext

allComponents - Variable in class org.catacomb.druid.build.GUIStore

allFiles - Variable in class org.catacomb.util.FileAccumulator

allOK() - Method in interface org.catacomb.interlish.service.ScriptReport

allowedFraction(double, double, double, double, double[]) - Static method in class org.catacomb.geom.Geom

alongArea - Variable in class org.textensor.stochdiff.numeric.morph.CuboidVolumeElement

alongArea - Variable in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

alphabiasshift - Static variable in class org.catacomb.movie.gif.NeuQuant

alphadec - Variable in class org.catacomb.movie.gif.NeuQuant

alphaPixelize(double[], double[], int, double, double, double) - Static method in class org.catacomb.graph.gui.Iconizer

alpharadbias - Static variable in class org.catacomb.movie.gif.NeuQuant

alpharadbshift - Static variable in class org.catacomb.movie.gif.NeuQuant

alreadyDrawn - Variable in class org.catacomb.druid.swing.split.DSplitterBar

altDistanceTo(Position, double[]) - Static method in class org.catacomb.geom.Geom

alterneigh(int, int, int, int, int) - Method in class org.catacomb.movie.gif.NeuQuant

altersingle(int, int, int, int, int) - Method in class org.catacomb.movie.gif.NeuQuant

ambientLight - Variable in class org.textensor.vis.SceneGraphViewer

amplitude - Variable in class org.catacomb.numeric.function.AR1Noise

analyze_hunk(Diff.change) - Method in class org.catacomb.util.DiffPrint.Base

Look at a hunk of edit script and report the range of lines in each file that it applies to.

analyzePixels() - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Analyzes image colors and creates color map.

angleBetween(Vector, Vector) - Static method in class org.textensor.stochdiff.geom.Geom

angleTo(Position) - Static method in class org.catacomb.geom.Geom

AnimatedGifEncoder - Class in org.catacomb.movie.gif

Class AnimatedGifEncoder - Encodes a GIF file consisting of one or more frames.

AnimatedGifEncoder() - Constructor for class org.catacomb.movie.gif.AnimatedGifEncoder

AnimSlice - Class in org.catacomb.numeric.data

AnimSlice(BlockStack, String, Field, String, SpriteStore) - Constructor for class org.catacomb.numeric.data.AnimSlice

annotationConnect(Object) - Method in class org.catacomb.druid.build.AnnotationConnector

AnnotationConnector - Class in org.catacomb.druid.build

AnnotationConnector(TargetStore) - Constructor for class org.catacomb.druid.build.AnnotationConnector

anonCpts - Variable in class org.catacomb.druid.gui.base.PanelPack

antialias() - Method in class org.catacomb.dataview.DataPlotPainter

antialias() - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

antialias() - Method in class org.catacomb.dataview.formats.MeshSummary

antialias() - Method in class org.catacomb.dataview.formats.PolyLineHandler

antialias() - Method in class org.catacomb.dataview.formats.SWCDisplay

antialias() - Method in class org.catacomb.dataview.formats.TableDataHandler

antialias() - Method in class org.catacomb.dataview.Plot

antialias - Variable in class org.catacomb.druid.blocks.TextArea

antialias - Variable in class org.catacomb.druid.swing.DDropCanvas

antialias - Variable in class org.catacomb.druid.swing.DTextCanvas

antialias() - Method in class org.catacomb.graph.arbor.SegmentGraphPainter

antialias - Variable in class org.catacomb.graph.arbor.SegmentGraphVE

antialias() - Method in class org.catacomb.graph.arbor.SegmentGraphVE

antialias() - Method in interface org.catacomb.graph.gui.BuildPaintInstructor

antialias() - Method in class org.catacomb.graph.gui.CanvasTest

antialias() - Method in class org.catacomb.graph.gui.Demo1

antialias() - Method in interface org.catacomb.graph.gui.PaintInstructor

antialias() - Method in class org.catacomb.graph.gui.SpriteMoviePainter

antialias - Variable in class org.catacomb.graph.gui.WorldCanvas

antialias() - Method in class org.catacomb.graph.gui.ZoneDemo

antialiasBV - Variable in class org.catacomb.druid.chunk.MouseModeController

ANY - Static variable in interface org.catacomb.interlish.structure.Plug

APPEND - Static variable in class org.catacomb.druid.gui.base.DruInfoPanel

append(TextBlock) - Method in class org.catacomb.druid.xtext.base.TextBlock

append(String) - Method in class org.catacomb.interlish.content.StringValue

append(int, int) - Method in class org.catacomb.movie.gif.ByteAccumulator

appendByte(byte) - Method in class org.catacomb.movie.gif.ByteAccumulator

appendByte(int) - Method in class org.catacomb.movie.gif.ByteAccumulator

appendBytes(byte[]) - Method in class org.catacomb.movie.gif.ByteAccumulator

appendBytes(byte[], int, int) - Method in class org.catacomb.movie.gif.ByteAccumulator

appendContent(Element, StringBuffer) - Method in class org.catacomb.interlish.reflect.ObjectBuilder

appendContent(Object, String) - Method in class org.catacomb.interlish.reflect.ReflectionConstructor

appendContent(Object, String) - Method in interface org.catacomb.interlish.structure.Constructor

appendContent(Object, String) - Method in class org.catacomb.serial.om.ElementConstructor

appendContent(Object, String) - Method in class org.catacomb.serial.xml.VectorConstructor

appendContent(String) - Method in interface org.textensor.stochdiff.inter.XMLContainer

appendContent(String) - Method in class org.textensor.stochdiff.neuroml.meta

appendContent(String) - Method in class org.textensor.stochdiff.neuroml.MorphMLProperties

appendContent(Object, String) - Method in class org.textensor.xml.ReflectionInstantiator

appendDescendantPaths(ArrayList<TreePath>, TreePath) - Method in class org.catacomb.druid.swing.CheckTreeSelectionModel

appendElement(StringBuffer, String, Element) - Static method in class org.catacomb.serial.xml.XMLElementWriter

appendHM(StringBuffer, HashMap<String, ? extends Object>) - Method in class org.catacomb.druid.build.GUIStore

appendInt2(int) - Method in class org.catacomb.movie.gif.ByteAccumulator

appendInt4(int) - Method in class org.catacomb.movie.gif.ByteAccumulator

appendLines(String, StringBuffer, String, String) - Static method in class org.catacomb.util.ScriptUtil

appendNV(StringBuffer, String, String, String) - Method in class org.catacomb.serial.xml.XMLWriter

appendNV(StringBuffer, String, String, boolean) - Method in class org.catacomb.serial.xml.XMLWriter

appendNV(StringBuffer, String, String, int) - Method in class org.catacomb.serial.xml.XMLWriter

appendNV(StringBuffer, String, String, double) - Method in class org.catacomb.serial.xml.XMLWriter

appendNV(StringBuffer, String, String, String[]) - Method in class org.catacomb.serial.xml.XMLWriter

appendNV(StringBuffer, String, String, int[]) - Method in class org.catacomb.serial.xml.XMLWriter

appendNV(StringBuffer, String, String, boolean[]) - Method in class org.catacomb.serial.xml.XMLWriter

appendNV(StringBuffer, String, String, double[]) - Method in class org.catacomb.serial.xml.XMLWriter

appendNV(StringBuffer, String, String, int[][]) - Method in class org.catacomb.serial.xml.XMLWriter

appendNV(StringBuffer, String, String, double[][]) - Method in class org.catacomb.serial.xml.XMLWriter

appendNV(StringBuffer, String, String, String) - Method in class org.textensor.xml.XMLWriter

appendNV(StringBuffer, String, String, boolean) - Method in class org.textensor.xml.XMLWriter

appendNV(StringBuffer, String, String, int) - Method in class org.textensor.xml.XMLWriter

appendNV(StringBuffer, String, String, double) - Method in class org.textensor.xml.XMLWriter

appendNV(StringBuffer, String, String, String[]) - Method in class org.textensor.xml.XMLWriter

appendNV(StringBuffer, String, String, int[]) - Method in class org.textensor.xml.XMLWriter

appendNV(StringBuffer, String, String, boolean[]) - Method in class org.textensor.xml.XMLWriter

appendNV(StringBuffer, String, String, double[]) - Method in class org.textensor.xml.XMLWriter

appendNV(StringBuffer, String, String, int[][]) - Method in class org.textensor.xml.XMLWriter

appendNV(StringBuffer, String, String, double[][]) - Method in class org.textensor.xml.XMLWriter

appendObject(StringBuffer, String, String, Object) - Method in class org.catacomb.serial.xml.XMLWriter

appendObject(StringBuffer, String, String, Object, boolean) - Method in class org.textensor.xml.XMLWriter

appendString(String) - Method in class org.catacomb.movie.gif.ByteAccumulator

appendString(StringBuffer, String) - Method in class org.catacomb.serial.xml.XMLWriter

appendString(StringBuffer, String) - Method in class org.textensor.xml.XMLWriter

appendTo(StringBuffer, String) - Method in class org.catacomb.serial.quickxml.Element

appendToBody(String, String) - Method in class org.catacomb.act.Classdef

appendToBody(String) - Method in class org.catacomb.act.MethodSignature

appHM - Variable in class org.textensor.vis.SceneGraphBuilder

APPLET - Static variable in class org.catacomb.interlish.service.Env

AppletDataViewer - Class in org.catacomb.dataview

AppletDataViewer() - Constructor for class org.catacomb.dataview.AppletDataViewer

Application - Class in org.catacomb.druid.blocks

Application() - Constructor for class org.catacomb.druid.blocks.Application

APPLICATION - Static variable in class org.catacomb.interlish.service.Env

applicationName - Variable in class org.catacomb.druid.load.DruidAppBase

applicationName - Static variable in class org.catacomb.interlish.service.AppPersist

appliedConductance - Variable in class org.catacomb.numeric.difnet.calc.NetMapNode

appliedDrive - Variable in class org.catacomb.numeric.difnet.calc.NetMapNode

appliedFlux - Variable in class org.catacomb.numeric.difnet.calc.NetMapNode

appliedValue - Variable in class org.catacomb.numeric.difnet.calc.NetMapNode

appliedValue - Variable in class org.catacomb.numeric.difnet.model.BasicStateNode

apply(DruPanel, Context) - Method in class org.catacomb.druid.blocks.Panel

apply(String) - Method in class org.catacomb.druid.gui.base.DruAbleEffect

apply(boolean) - Method in class org.catacomb.druid.gui.base.DruAbleEffect

apply(boolean) - Method in class org.catacomb.druid.gui.base.DruCardSelectionEffect

apply(boolean) - Method in class org.catacomb.druid.gui.base.DruCloseEffect

apply(boolean) - Method in class org.catacomb.druid.gui.base.DruInfoEffect

apply(boolean) - Method in class org.catacomb.druid.gui.base.DruPrintEffect

apply(String) - Method in class org.catacomb.druid.gui.base.DruSuggestEffect

apply() - Method in class org.catacomb.druid.gui.base.DruSuggestEffect

apply(boolean) - Method in class org.catacomb.druid.gui.base.DruSuggestEffect

apply(boolean) - Method in class org.catacomb.druid.gui.edit.DruWindowEditEffect

apply(boolean) - Method in class org.catacomb.druid.gui.edit.Effect

apply(String) - Method in class org.catacomb.druid.gui.edit.Effect

apply(Movable) - Method in class org.textensor.stochdiff.geom.GTranslation

applyAAPreference(Graphics2D) - Method in class org.catacomb.graph.gui.WorldCanvas

applyAreaCapacitance(double) - Method in class org.catacomb.numeric.difnet.model.BasicStructureLink

applyAreaConductance(double) - Method in class org.catacomb.numeric.difnet.model.BasicStructureLink

applyAttributes(Object, Attribute[]) - Method in class org.catacomb.interlish.reflect.ReflectionConstructor

applyAttributes(Object, Attribute[]) - Method in interface org.catacomb.interlish.structure.Constructor

applyAttributes(Object, Attribute[]) - Method in class org.catacomb.serial.om.ElementConstructor

applyAttributes(Object, Attribute[]) - Method in class org.catacomb.serial.xml.VectorConstructor

applyAttributes(Object, Attribute[]) - Method in class org.textensor.xml.ReflectionInstantiator

applyAxialConductance(double) - Method in class org.catacomb.numeric.difnet.model.BasicStructureLink

applyBorder(DruPanel, Context) - Method in class org.catacomb.druid.blocks.Panel

applyBrightness(double) - Method in class org.textensor.vis.SceneGraphViewer

applyData() - Method in class org.catacomb.dataview.FrameController

applyData(double[]) - Method in class org.catacomb.dataview.gui.FramePlayerController

applyDefaultRollover(DruButton) - Method in class org.catacomb.druid.blocks.AbstractButton

applyDescription(String) - Method in interface org.catacomb.interlish.structure.Describer

applyEffects(boolean) - Method in class org.catacomb.druid.gui.edit.DruButton

applyFontProperties() - Method in class org.catacomb.druid.xtext.edit.GuiseController

applyFuncToScalar(double, String) - Method in class org.catacomb.numeric.data.DataSlice

applyFuncToVector(double[], String) - Method in class org.catacomb.numeric.data.DataSlice

applyID(String) - Method in interface org.catacomb.interlish.structure.IDer

applyInfo(String) - Method in interface org.catacomb.interlish.structure.Infoer

applyLAF() - Method in class org.catacomb.graph.gui.AboveBelowSplitPanel

applyLAF() - Method in class org.catacomb.graph.gui.LeftRightSplitPanel

applyLayout(int, int, int) - Method in class org.catacomb.druid.gui.base.DruFlowPanel

applyMark(DataItem) - Method in class org.catacomb.numeric.data.DataSlice

applyMenuRollover(DruButton) - Method in class org.catacomb.druid.blocks.AbstractButton

applyMode(String) - Method in class org.catacomb.druid.util.FileChooser

applyName(String) - Method in interface org.catacomb.interlish.structure.Namer

applyOnDown(Mouse) - Method in class org.catacomb.graph.gui.BoxSelectionHandler

applyOnDown(Mouse) - Method in class org.catacomb.graph.gui.ClickZoomHandler

applyOnDown(Mouse) - Method in class org.catacomb.graph.gui.MouseHandler

applyOnDown(Mouse) - Method in class org.catacomb.graph.gui.PickHandler

applyOnDown(Mouse) - Method in class org.catacomb.graph.gui.RollHandler

applyOnDown(Mouse) - Method in class org.catacomb.graph.gui.TurntableHandler

applyOnDrag(Mouse) - Method in class org.catacomb.graph.gui.BoxSelectionHandler

applyOnDrag(Mouse) - Method in class org.catacomb.graph.gui.ClickZoomHandler

applyOnDrag(Mouse) - Method in class org.catacomb.graph.gui.MouseHandler

applyOnDrag(Mouse) - Method in class org.catacomb.graph.gui.PanHandler

applyOnDrag(Mouse) - Method in class org.catacomb.graph.gui.PickHandler

applyOnDrag(Mouse) - Method in class org.catacomb.graph.gui.RollHandler

applyOnDrag(Mouse) - Method in class org.catacomb.graph.gui.TurntableHandler

applyOnDrag(Mouse) - Method in class org.catacomb.graph.gui.TurnZoomHandler

applyOnRelease(Mouse) - Method in class org.catacomb.graph.gui.BoxSelectionHandler

applyOnRelease(Mouse) - Method in class org.catacomb.graph.gui.ClickZoomHandler

applyOnRelease(Mouse) - Method in class org.catacomb.graph.gui.MouseHandler

applyOnRelease(Mouse) - Method in class org.catacomb.graph.gui.PanHandler

applyOnRelease(Mouse) - Method in class org.catacomb.graph.gui.PickHandler

applyOnRelease(Mouse) - Method in class org.catacomb.graph.gui.RollHandler

applyOnRelease(Mouse) - Method in class org.catacomb.graph.gui.TurntableHandler

applyPadding(DruButton) - Method in class org.catacomb.druid.blocks.AbstractButton

applyPosition(double, double) - Method in interface org.catacomb.interlish.structure.Positioner

applyRecordedRange() - Method in class org.catacomb.graph.gui.WorldTransform

applyReplacements(String, String[][]) - Method in class org.catacomb.xdoc.TextTagger

applyReplacementsMultiline(String, String[][]) - Method in class org.catacomb.xdoc.TextTagger

applyResolve(Object) - Method in class org.catacomb.numeric.data.DataSlice

applyRollover() - Method in class org.catacomb.druid.swing.DButton

applyRollover() - Method in class org.catacomb.druid.swing.DMenu

applyRotation(double[][]) - Method in class org.catacomb.graph.gui.WorldTransform

applyScript(String, Object) - Method in interface org.catacomb.interlish.structure.ScriptSetter

applySetState() - Method in class org.catacomb.druid.swing.DFrame

applySize(double) - Method in interface org.catacomb.interlish.structure.Sizer

applySliceToVector(double[], String) - Method in class org.catacomb.numeric.data.DataSlice

applyState() - Method in class org.catacomb.druid.gui.edit.DruCheckbox

applyState(String) - Method in class org.catacomb.druid.gui.edit.DruChoice

applyState() - Method in class org.catacomb.druid.swing.DToggleButton

applySymmetry(Shape, ShapePoint, Position) - Static method in class org.catacomb.graph.drawing.ShapeSymmetry

applySymmetryToShape(Shape) - Method in class org.catacomb.graph.drawing.Circle

applySymmetryToShape(Shape) - Method in class org.catacomb.graph.drawing.Oval

applySymmetryToShape(Shape) - Method in class org.catacomb.graph.drawing.Rectangle

applySymmetryToShape(Shape) - Method in class org.catacomb.graph.drawing.Square

applyTag(String) - Method in interface org.catacomb.interlish.structure.Tagger

applyToShape(Shape) - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

applyToShape(Shape) - Method in class org.catacomb.graph.drawing.GenericShape

applyToShape(Shape) - Method in class org.catacomb.graph.drawing.IconWrapper

applyToShape(Shape) - Method in class org.catacomb.graph.drawing.Oval

applyToShape(Shape) - Method in class org.catacomb.graph.drawing.Rectangle

applyToShape(Shape) - Method in class org.catacomb.graph.drawing.SegmentLine

applyToShape(Shape) - Method in class org.catacomb.graph.drawing.StraightLine

applyToShape(Shape) - Method in class org.catacomb.graph.drawing.Triangle

applyToWorkbench() - Method in class org.catacomb.druid.gui.base.DruAssemblyPanel

applyType(WordBlock, XType) - Method in class org.catacomb.druid.xtext.canvas.DataBoard

applyUIColors(Color) - Static method in class org.catacomb.druid.gui.base.DruTabbedPanel

applyUIColors(Color) - Static method in class org.catacomb.druid.swing.DTabbedPane

AppPersist - Class in org.catacomb.interlish.service

AppPersist() - Constructor for class org.catacomb.interlish.service.AppPersist

AppPersistProvider - Interface in org.catacomb.interlish.service

approv - Static variable in class org.catacomb.interlish.service.AppPersist

AR1Noise - Class in org.catacomb.numeric.function

AR1Noise() - Constructor for class org.catacomb.numeric.function.AR1Noise

Archivist - Class in org.catacomb.serial

Archivist() - Constructor for class org.catacomb.serial.Archivist

area - Variable in class org.catacomb.numeric.difnet.model.BasicStructureLink

area - Variable in class org.catacomb.numeric.difnet.model.BasicStructureNode

area(double, double, double, double, double, double, double, double) - Static method in class org.catacomb.numeric.geom.Carrot

areaDensity - Variable in class org.textensor.stochdiff.model.SpineAllocation

areaHM - Variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

areSiblingsSelected(TreePath) - Method in class org.catacomb.druid.swing.CheckTreeSelectionModel

arglist - Variable in class org.catacomb.act.MethodStub

args - Variable in class org.catacomb.act.MethodSignature

argtype - Variable in class org.catacomb.act.SuperCallConstructor

argTypes - Variable in class org.catacomb.act.FunctionSignature

armSelection(String) - Method in class org.catacomb.druid.swing.DPopLabel

Array - Class in org.catacomb.datalish.array

Array() - Constructor for class org.catacomb.datalish.array.Array

ARRAY - Static variable in class org.catacomb.numeric.data.DataSlice

arrayCopy(double[]) - Static method in class org.catacomb.datalish.array.Array

arrayCopy(double[][]) - Static method in class org.catacomb.datalish.array.Array

ArrayDeclaration - Class in org.catacomb.act

ArrayDeclaration(String) - Constructor for class org.catacomb.act.ArrayDeclaration

arrayDecs - Variable in class org.catacomb.act.Classdef

ArrayListNode - Class in org.catacomb.druid.util.tree

ArrayListNode(Object, String) - Constructor for class org.catacomb.druid.util.tree.ArrayListNode

arraysMatch(String[], String[]) - Static method in class org.textensor.util.ArrayUtil

ArrayUtil - Class in org.catacomb.util

ArrayUtil() - Constructor for class org.catacomb.util.ArrayUtil

ArrayUtil - Class in org.textensor.util

ArrayUtil() - Constructor for class org.textensor.util.ArrayUtil

arrayValue - Variable in class org.catacomb.numeric.data.DataSlice

AsciiIO - Class in org.catacomb.numeric.data

AsciiIO() - Constructor for class org.catacomb.numeric.data.AsciiIO

aspectRatio - Variable in class org.catacomb.graph.gui.WorldTransform

Assembly - Interface in org.catacomb.interlish.structure

AssemblyEditor - Interface in org.catacomb.interlish.structure

AssemblyInstance - Class in org.catacomb.serial.state

AssemblyInstance() - Constructor for class org.catacomb.serial.state.AssemblyInstance

AssemblyPanel - Class in org.catacomb.druid.blocks

AssemblyPanel() - Constructor for class org.catacomb.druid.blocks.AssemblyPanel

assignedColor - Variable in class org.catacomb.graph.gui.DisplayStyleSet

assignedLine - Variable in class org.catacomb.graph.gui.DisplayStyleSet

assignIfUnset() - Method in class org.catacomb.graph.gui.DisplayStyleSet

at - Variable in class org.textensor.stochdiff.model.EndPoint

at - Variable in class org.textensor.stochdiff.model.Section

aText - Variable in class org.catacomb.druid.xtext.data.XRelation

atFraction - Variable in class org.textensor.stochdiff.model.EndPoint

attach(Object) - Method in class org.catacomb.graph.gui.DataDisplay

attach(Object) - Method in class org.catacomb.graph.gui.DrawingCanvas

attach(Object) - Method in class org.catacomb.graph.gui.MovieDisplay

attach(Object) - Method in class org.catacomb.graph.gui.PickWorldCanvas

attached() - Method in class org.catacomb.dataview.DataviewController

attached() - Method in class org.catacomb.dataview.FrameController

attached() - Method in class org.catacomb.dataview.gui.BasicPlotController

attached() - Method in class org.catacomb.dataview.gui.CCVizController

attached() - Method in class org.catacomb.dataview.gui.DViewController

attached() - Method in class org.catacomb.dataview.gui.DViewPlotController

attached() - Method in class org.catacomb.dataview.gui.FramePlayerController

attached() - Method in class org.catacomb.dataview.gui.Mesh2plusTimeController

attached() - Method in class org.catacomb.druid.build.ReceivingController

attached() - Method in class org.catacomb.druid.build.TreeController

attached() - Method in class org.catacomb.druid.chunk.MouseModeController

attached() - Method in class org.catacomb.druid.chunk.MoviePlayController

attached() - Method in class org.catacomb.druid.dialog.CheckSeenDialogController

attached() - Method in class org.catacomb.druid.dialog.DialogController

attached() - Method in class org.catacomb.druid.util.ctrl.WindowCloser

attached() - Method in class org.catacomb.druid.xtext.edit.GuiseController

attached() - Method in class org.catacomb.graph.drawing.IconEditorController

attached() - Method in interface org.catacomb.interlish.structure.Controller

attachGraphicsController(Object) - Method in class org.catacomb.druid.gui.base.DruDataDisplay

attachGraphicsController(Object) - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

attachGraphicsController(Object) - Method in class org.catacomb.druid.gui.base.DruMovieDisplay

attachGraphicsController(Object) - Method in interface org.catacomb.interlish.structure.GraphicsView

attachLabelToSelected(String) - Method in class org.catacomb.graph.arbor.SegmentGraph

AttachmentPoint - Interface in org.catacomb.interlish.structure

attachMultipleControllers(ArrayList<Controller>) - Method in class org.catacomb.druid.build.Druid

attachRollover() - Method in class org.catacomb.druid.swing.DFloatSlider

attachRollover() - Method in class org.catacomb.druid.swing.DSlider

attachRollover() - Method in class org.catacomb.graph.gui.IconButton

attachRollover() - Method in class org.catacomb.graph.gui.IconRadioButton

attachRow(Row) - Method in interface org.catacomb.interlish.structure.RowPeer

attachSingleController(Controller) - Method in class org.catacomb.druid.build.Druid

attachTable(Table) - Method in class org.catacomb.graph.drawing.Shape

attachTable(Table) - Method in interface org.catacomb.interlish.structure.TablePeer

attachTo(NetState) - Method in class org.catacomb.numeric.difnet.model.BasicNetStim

attachTo(StateNode) - Method in class org.catacomb.numeric.difnet.model.PointCurrentStim

attachTo(StateNode) - Method in class org.catacomb.numeric.difnet.model.PointStim

attachTo(StateNode) - Method in class org.catacomb.numeric.difnet.model.PointVoltageStim

attNV - Variable in class org.catacomb.serial.xml.XMLToken

attNV - Variable in class org.textensor.xml.XMLToken

Attribute - Interface in org.catacomb.interlish.structure

Attribute - Class in org.textensor.xml

Attribute(String, String) - Constructor for class org.textensor.xml.Attribute

AttributeAddableTo - Interface in org.catacomb.interlish.structure

Attributed - Interface in org.catacomb.interlish.structure

attributeLine - Static variable in class org.catacomb.xdoc.TextTagger

attributes - Variable in class org.catacomb.serial.om.OmElement

AUTO - Static variable in class org.textensor.vis.IcingPoint

auto() - Method in class org.textensor.vis.IcingPoint

AUTO_ROOT - Static variable in interface org.catacomb.interlish.structure.Tree

AutonomousDialog - Class in org.catacomb.druid.blocks

AutonomousDialog() - Constructor for class org.catacomb.druid.blocks.AutonomousDialog

AutonomousPanel - Class in org.catacomb.druid.blocks

AutonomousPanel() - Constructor for class org.catacomb.druid.blocks.AutonomousPanel

autorange(boolean) - Method in class org.catacomb.dataview.Plot

autoResize - Variable in class org.catacomb.druid.blocks.ExpandingTextArea

autoResize - Variable in class org.catacomb.druid.gui.edit.DruExpandingTextArea

autoSelect - Variable in class org.catacomb.druid.blocks.Choice

autoSelect - Variable in class org.catacomb.druid.blocks.RadioButtons

autoSelect - Variable in class org.catacomb.druid.swing.DChoice

autoset - Variable in class org.catacomb.druid.blocks.Choice

AVAGADRO - Static variable in class org.textensor.stochdiff.phys.Phys

average(Matrix[], Matrix[], double) - Static method in class org.catacomb.numeric.math.Matrix

average(Matrix, Matrix, double) - Static method in class org.catacomb.numeric.math.Matrix

average(Matrix[], Matrix[], double) - Static method in class org.textensor.stochdiff.numeric.math.Matrix

average(Matrix, Matrix, double) - Static method in class org.textensor.stochdiff.numeric.math.Matrix

avg(double[]) - Static method in class org.catacomb.numeric.array.MDA

avg(double[]) - Static method in class org.catacomb.util.ArrayUtil

avg(double[][]) - Static method in class org.catacomb.util.ArrayUtil

avgAbs() - Method in class org.textensor.stochdiff.numeric.math.Column

AWTUtil - Class in org.catacomb.util

AWTUtil() - Constructor for class org.catacomb.util.AWTUtil

axes - Variable in class org.catacomb.druid.blocks.DrawingCanvas

axesOnGrid - Variable in class org.catacomb.graph.gui.GridPainter

Axis - Class in org.catacomb.dataview.build

Axis() - Constructor for class org.catacomb.dataview.build.Axis

axisColor - Variable in class org.catacomb.druid.blocks.DrawingCanvas

axisColor - Variable in class org.catacomb.graph.gui.GridPainter

AxisGraphDivider - Class in org.catacomb.graph.gui

AxisGraphDivider(BasicSplitPaneUI) - Constructor for class org.catacomb.graph.gui.AxisGraphDivider

AxisLayout - Class in org.catacomb.dataview.model

AxisLayout() - Constructor for class org.catacomb.dataview.model.AxisLayout

AxisPainter - Class in org.catacomb.dataview

AxisPainter(Graphics2D, WorldTransform) - Constructor for class org.catacomb.dataview.AxisPainter

axisRotate(double, double) - Method in class org.catacomb.graph.gui.WorldTransform

aXPlusBY(double, Position, double, Position) - Static method in class org.catacomb.be.Position

B

b - Variable in class org.catacomb.druid.swing.ToggleItem

b_antialias - Variable in class org.catacomb.graph.arbor.SegmentGraphPainter

b_live - Variable in class org.catacomb.graph.arbor.SegmentGraphPainter

ba - Variable in class org.catacomb.movie.gif.ByteAccumulator

background - Variable in class org.catacomb.druid.blocks.Application

background - Variable in class org.catacomb.druid.blocks.EditorWindow

background - Variable in class org.catacomb.interlish.content.ColorSet

backgroundColor - Variable in class org.catacomb.druid.blocks.AutonomousDialog

backgroundColor - Variable in class org.catacomb.druid.blocks.AutonomousPanel

backgroundColor - Variable in class org.catacomb.druid.blocks.Dialog

backgroundColor - Variable in class org.catacomb.druid.blocks.EditorWindow

backgroundColor - Variable in class org.catacomb.druid.blocks.Frame

backgroundColor - Variable in class org.catacomb.druid.blocks.Panel

backgroundColor - Variable in class org.catacomb.druid.gui.base.DruFrame

backgroundPressed(int, int, int) - Method in class org.catacomb.graph.arbor.SegmentGraphVE

backgroundPressed(int, int, int) - Method in interface org.catacomb.graph.gui.PickListener

backgroundPressed(int, int, int) - Method in class org.catacomb.graph.gui.ZoneDemo

BALANCED - Static variable in class org.textensor.stochdiff.disc.SegmentSlicer

ball - Variable in class org.textensor.vis.IcingPoint

BARE - Static variable in class org.catacomb.druid.swing.DTextArea

bars - Variable in class org.catacomb.druid.blocks.ScrollPanel

Base64 - Class in org.catacomb.util

A utility class to convert to and from base 64 encoding.

Base64() - Constructor for class org.catacomb.util.Base64

BaseCalc - Class in org.textensor.stochdiff.numeric

BaseCalc(SDRun) - Constructor for class org.textensor.stochdiff.numeric.BaseCalc

BaseCalc.algorithm_t - Enum in org.textensor.stochdiff.numeric

BaseCalc.algorithm_t() - Constructor for enum org.textensor.stochdiff.numeric.BaseCalc.algorithm_t

BaseCalc.distribution_t - Enum in org.textensor.stochdiff.numeric

BaseCalc.distribution_t() - Constructor for enum org.textensor.stochdiff.numeric.BaseCalc.distribution_t

BaseCanvas - Class in org.catacomb.graph.gui

BaseCanvas(int, int) - Constructor for class org.catacomb.graph.gui.BaseCanvas

baseConcentrations - Variable in class org.textensor.stochdiff.numeric.BaseCalc

BaseContentReader - Class in org.catacomb.dataview.read

BaseContentReader(FUImportContext) - Constructor for class org.catacomb.dataview.read.BaseContentReader

baseController - Variable in class org.catacomb.druid.build.Druid

baseDelta - Variable in class org.textensor.stochdiff.disc.CurvedVolumeSlice

baseDir - Variable in class org.catacomb.dataview.read.FileImportContext

BaseEffect - Class in org.catacomb.druid.blocks

BaseEffect() - Constructor for class org.catacomb.druid.blocks.BaseEffect

baseFile - Variable in class org.catacomb.dataview.read.FileImportContext

baseGrid(TreePoint, TreePoint, String) - Method in class org.textensor.stochdiff.disc.DiscBoxer

baseGrid(TreePoint, TreePoint, String) - Method in class org.textensor.stochdiff.disc.DiscSplitter

baseGrid(TreePoint, TreePoint, String) - Method in class org.textensor.stochdiff.disc.LineBoxer

baseGroup - Variable in class org.textensor.vis.SceneGraphBuilder

baseGroup - Variable in class org.textensor.vis.SceneGraphViewer

baseHardGrid(TreePoint, TreePoint, String, String, double) - Method in class org.textensor.stochdiff.disc.LineBoxer

baseInit() - Method in class org.catacomb.graph.drawing.VectorIcon

baseLabel - Variable in class org.catacomb.druid.swing.DCheckboxMenuItem

baseLabel - Variable in class org.catacomb.druid.swing.DMenuItem

BasePanel - Class in org.catacomb.graph.gui

BasePanel() - Constructor for class org.catacomb.graph.gui.BasePanel

baseSoftGrid(TreePoint, TreePoint, String, String, double) - Method in class org.textensor.stochdiff.disc.LineBoxer

baseURL - Variable in class org.catacomb.dataview.read.URLImportContext

baseURLDir - Variable in class org.catacomb.dataview.read.URLImportContext

basicController - Variable in class org.catacomb.dataview.gui.CCVizController

basicController - Variable in class org.catacomb.dataview.gui.DViewController

BasicNetFactory - Class in org.catacomb.numeric.difnet.model

BasicNetFactory() - Constructor for class org.catacomb.numeric.difnet.model.BasicNetFactory

BasicNetRecorder - Class in org.catacomb.numeric.difnet.model

BasicNetRecorder() - Constructor for class org.catacomb.numeric.difnet.model.BasicNetRecorder

BasicNetState - Class in org.catacomb.numeric.difnet.model

BasicNetState(BasicNetStructure, BasicStateNode[], BasicStateLink[]) - Constructor for class org.catacomb.numeric.difnet.model.BasicNetState

BasicNetStim - Class in org.catacomb.numeric.difnet.model

BasicNetStim() - Constructor for class org.catacomb.numeric.difnet.model.BasicNetStim

BasicNetStructure - Class in org.catacomb.numeric.difnet.model

BasicNetStructure() - Constructor for class org.catacomb.numeric.difnet.model.BasicNetStructure

BasicPlotController - Class in org.catacomb.dataview.gui

BasicPlotController() - Constructor for class org.catacomb.dataview.gui.BasicPlotController

BasicStateLink - Class in org.catacomb.numeric.difnet.model

BasicStateLink(BasicStructureLink, BasicStateNode, BasicStateNode) - Constructor for class org.catacomb.numeric.difnet.model.BasicStateLink

BasicStateNode - Class in org.catacomb.numeric.difnet.model

BasicStateNode(BasicStructureNode) - Constructor for class org.catacomb.numeric.difnet.model.BasicStateNode

BasicStructureLink - Class in org.catacomb.numeric.difnet.model

BasicStructureLink() - Constructor for class org.catacomb.numeric.difnet.model.BasicStructureLink

BasicStructureLink(BasicStructureNode, BasicStructureNode) - Constructor for class org.catacomb.numeric.difnet.model.BasicStructureLink

BasicStructureNode - Class in org.catacomb.numeric.difnet.model

BasicStructureNode() - Constructor for class org.catacomb.numeric.difnet.model.BasicStructureNode

BasicTimestep - Class in org.catacomb.be

BasicTimestep(double) - Constructor for class org.catacomb.be.BasicTimestep

BasicTouchTime - Class in org.catacomb.interlish.content

BasicTouchTime() - Constructor for class org.catacomb.interlish.content.BasicTouchTime

BatchImageMaker - Class in org.catacomb.dataview

BatchImageMaker(String[]) - Constructor for class org.catacomb.dataview.BatchImageMaker

bCalc - Variable in class org.textensor.stochdiff.SDCalc

bdiag - Variable in class org.catacomb.util.Diff

bdiagoff - Variable in class org.catacomb.util.Diff

bdry - Variable in class org.catacomb.graph.gui.SimpleVectorSprite

bdry - Variable in class org.catacomb.numeric.data.XYVectorSprite

bdsa - Variable in class org.textensor.stochdiff.disc.CurvedVolumeSlice

bdsb - Variable in class org.textensor.stochdiff.disc.CurvedVolumeSlice

bestRelay(String, HashMap<String, ActionRelay>, ActionRelay) - Method in class org.catacomb.druid.build.Druid

beta - Static variable in class org.catacomb.movie.gif.NeuQuant

betagamma - Static variable in class org.catacomb.movie.gif.NeuQuant

betashift - Static variable in class org.catacomb.movie.gif.NeuQuant

bgc - Variable in class org.catacomb.druid.gui.base.DruAssemblyPanel

bgColor - Variable in class org.catacomb.dataview.Plot

bgColor - Variable in class org.catacomb.druid.gui.base.DruPanel

bgColor - Variable in class org.catacomb.druid.swing.DDropCanvas

bgColor - Variable in class org.catacomb.druid.swing.DFloatSlider

bgColor - Variable in class org.catacomb.druid.swing.DRadioButtons

bgcolor - Variable in class org.catacomb.druid.swing.DScrollPane

bgColor - Variable in class org.catacomb.druid.swing.DSlider

bgColor - Variable in class org.catacomb.druid.swing.DSplitPaneUI

bgColor - Variable in class org.catacomb.druid.swing.DTextCanvas

bgColor - Variable in class org.catacomb.druid.swing.DToggleButton

bgcolor - Static variable in class org.catacomb.druid.swing.LAF

bgColor - Variable in class org.catacomb.druid.swing.RolloverEffect

bgColor - Variable in class org.catacomb.graph.gui.BaseCanvas

bgColor - Variable in class org.catacomb.graph.gui.MovieDisplay

bgColor - Variable in class org.catacomb.graph.gui.RolloverEffect

bGroup - Variable in class org.textensor.vis.SceneItem

bias - Variable in class org.catacomb.movie.gif.NeuQuant

Binariable - Interface in org.catacomb.interlish.structure

binarize(NumDataSet) - Static method in class org.catacomb.dataview.read.NumericDataRW

binarize() - Method in interface org.catacomb.interlish.structure.Binariable

binary - Variable in class org.catacomb.dataview.build.DataSource

BINARY - Static variable in class org.textensor.stochdiff.ResultWriter

binaryurl - Variable in class org.catacomb.dataview.build.DataSource

BinomialTable - Class in org.textensor.stochdiff.numeric.stochastic

BinomialTable() - Constructor for class org.textensor.stochdiff.numeric.stochastic.BinomialTable

bInstance - Static variable in class org.textensor.stochdiff.numeric.stochastic.InterpolatingStepGenerator

BITS - Static variable in class org.catacomb.movie.gif.LZWEncoder

bl - Variable in class org.catacomb.druid.swing.DRadioButton

BLACK - Static variable in class org.catacomb.numeric.phys.Phys

Block - Class in org.catacomb.druid.xtext.base

Block() - Constructor for class org.catacomb.druid.xtext.base.Block

BlockSignature - Interface in org.catacomb.act

BlockStack - Class in org.catacomb.numeric.data

BlockStack(NumDataStore, String) - Constructor for class org.catacomb.numeric.data.BlockStack

blockStack - Variable in class org.catacomb.numeric.data.StackSlice

blockStacks - Variable in class org.catacomb.numeric.data.NumDataStore

BLUE - Static variable in class org.catacomb.numeric.phys.Phys

bnext - Variable in class org.catacomb.druid.gui.base.DruBrowserPanel

BoardRepainterDMItem - Class in org.catacomb.druid.xtext.canvas

BoardRepainterDMItem() - Constructor for class org.catacomb.druid.xtext.canvas.BoardRepainterDMItem

BoardRepainterDMItem(RegionBoard) - Constructor for class org.catacomb.druid.xtext.canvas.BoardRepainterDMItem

boards - Variable in class org.catacomb.druid.market.HookupBoard

boards - Variable in class org.catacomb.druid.xtext.canvas.BoardRepainterDMItem

body - Variable in class org.catacomb.act.DefaultConstructor

body - Variable in class org.catacomb.act.MethodSignature

body - Variable in class org.catacomb.act.SuperCallConstructor

body - Variable in class org.catacomb.interlish.report.Message

body - Variable in class org.catacomb.serial.om.OmElement

BodyValued - Interface in org.catacomb.interlish.structure

BodyValued - Interface in org.textensor.stochdiff.inter

boldfont - Static variable in class org.catacomb.druid.swing.DBaseButton

boldfont - Static variable in class org.catacomb.druid.swing.DCheckboxList

boldfont - Static variable in class org.catacomb.druid.swing.DEditorPane

boldfont - Static variable in class org.catacomb.druid.swing.DLabel

boldfont - Static variable in class org.catacomb.druid.swing.DList

BOLDFONT - Static variable in class org.catacomb.druid.swing.DPanel

boldFont - Variable in class org.catacomb.druid.xtext.canvas.FontStore

boltzmannConstant - Static variable in class org.catacomb.numeric.phys.Phys

booleanValue - Variable in class org.catacomb.druid.gui.edit.DruCheckbox

BooleanValue - Class in org.catacomb.interlish.content

BooleanValue() - Constructor for class org.catacomb.interlish.content.BooleanValue

BooleanValue(boolean) - Constructor for class org.catacomb.interlish.content.BooleanValue

BooleanValueEditor - Interface in org.catacomb.interlish.structure

boolval - Variable in class org.catacomb.interlish.content.BooleanValue

border - Variable in class org.catacomb.druid.blocks.Panel

borderBg - Variable in class org.catacomb.graph.gui.GraphColors

borderColor - Variable in class org.catacomb.druid.swing.DPanel

borderFg - Variable in class org.catacomb.graph.gui.GraphColors

borderFont - Variable in class org.catacomb.druid.swing.DPanel

BorderPanel - Class in org.catacomb.druid.blocks

BorderPanel() - Constructor for class org.catacomb.druid.blocks.BorderPanel

borderTitle - Variable in class org.catacomb.druid.blocks.Panel

BorderUtil - Class in org.catacomb.druid.swing

BorderUtil() - Constructor for class org.catacomb.druid.swing.BorderUtil

borderWidth - Variable in class org.catacomb.druid.blocks.Panel

BOTH - Static variable in interface org.catacomb.graph.gui.RangeListener

bottomMargin - Variable in class org.catacomb.dataview.GraphMaker

bottomMargin - Variable in class org.catacomb.graph.gui.WorldTransform

boundaries - Variable in class org.textensor.stochdiff.disc.DiscretizedSpine

boundary - Variable in class org.textensor.stochdiff.numeric.morph.VolumeElement

Bounded - Interface in org.catacomb.interlish.structure

Box - Class in org.catacomb.datalish

Box(Position) - Constructor for class org.catacomb.datalish.Box

Box(double, double) - Constructor for class org.catacomb.datalish.Box

Box() - Constructor for class org.catacomb.datalish.Box

Box(double, double, double, double) - Constructor for class org.catacomb.datalish.Box

BOX - Static variable in class org.catacomb.graph.gui.WorldCanvas

BoxPanel - Class in org.catacomb.druid.blocks

BoxPanel() - Constructor for class org.catacomb.druid.blocks.BoxPanel

boxSelected(int, int, int, int) - Method in class org.catacomb.graph.gui.Mouse

boxSelected(int, int, int, int) - Method in class org.catacomb.graph.gui.WorldCanvas

boxSelected(int, int, int, int) - Method in class org.catacomb.graph.gui.WorldTransform

BoxSelectionHandler - Class in org.catacomb.graph.gui

BoxSelectionHandler() - Constructor for class org.catacomb.graph.gui.BoxSelectionHandler

boxSelectionHandler - Variable in class org.catacomb.graph.gui.WorldCanvas

boxSize - Variable in class org.textensor.stochdiff.numeric.morph.VolumeSlice

bprevious - Variable in class org.catacomb.druid.gui.base.DruBrowserPanel

branchChanged(ChangeEvent) - Method in interface org.catacomb.interlish.structure.BranchListener

BranchListener - Interface in org.catacomb.interlish.structure

BranchTest - Class in org.textensor.stochdiff.examples.branch

BranchTest() - Constructor for class org.textensor.stochdiff.examples.branch.BranchTest

BranchTest3 - Class in org.textensor.stochdiff.examples.branch

BranchTest3() - Constructor for class org.textensor.stochdiff.examples.branch.BranchTest3

brighter(Color) - Static method in class org.catacomb.util.ColorUtil

brightness - Variable in class org.textensor.vis.SceneGraphViewer

BRIGHTORANGE - Static variable in class org.catacomb.numeric.phys.Phys

BrowserPanel - Class in org.catacomb.druid.blocks

BrowserPanel() - Constructor for class org.catacomb.druid.blocks.BrowserPanel

bs1 - Variable in class org.catacomb.druid.swing.DDropCanvas

bs1 - Variable in class org.catacomb.druid.swing.DTextCanvas

bs1 - Variable in class org.catacomb.graph.gui.BaseCanvas

bText - Variable in class org.catacomb.druid.xtext.data.XRelation

bufColor - Variable in class org.catacomb.druid.swing.DButton

bufdsa - Variable in class org.catacomb.numeric.data.DataSetArray

BUFFERED - Static variable in class org.catacomb.graph.gui.MouseHandler

buffered_lines - Variable in class org.catacomb.util.Diff.file_data

Number of elements (lines) in this file.

bufLimits - Variable in class org.catacomb.graph.arbor.SegmentGraph

bufSel - Variable in class org.catacomb.druid.swing.DCheckboxList

bufSel - Variable in class org.catacomb.druid.swing.DList

bufText - Variable in class org.catacomb.druid.build.InfoAggregator

bufTitle - Variable in class org.catacomb.druid.build.InfoAggregator

build(int) - Method in class org.catacomb.druid.util.tree.RelationTree

build_script(boolean[], int, boolean[], int) - Method in class org.catacomb.util.Diff.ForwardScript

Scan the tables of which lines are inserted and deleted, producing an edit script in forward order.

build_script(boolean[], int, boolean[], int) - Method in class org.catacomb.util.Diff.ReverseScript

build_script(boolean[], int, boolean[], int) - Method in interface org.catacomb.util.Diff.ScriptBuilder

Scan the tables of which lines are inserted and deleted, producing an edit script.

buildAppletPrep(Context) - Method in class org.catacomb.dataview.build.Dataview

buildApplication(Context) - Method in class org.catacomb.dataview.build.Dataview

Builder - Class in org.catacomb.graph.gui

Builder(Painter, PickStore) - Constructor for class org.catacomb.graph.gui.Builder

builder - Variable in class org.catacomb.graph.gui.PickWorldCanvas

buildFlatTree(IcingPoint[], int, double) - Method in class org.textensor.vis.SceneGraphBuilder

buildFromElement(Element) - Method in class org.catacomb.interlish.reflect.ObjectBuilder

buildGrid(double, HashMap<String, Double>) - Method in class org.textensor.stochdiff.disc.DiscBoxer

buildGrid() - Method in class org.textensor.stochdiff.disc.DiscSplitter

buildGrid(double, HashMap<String, Double>) - Method in class org.textensor.stochdiff.disc.LineBoxer

buildGrid(double, HashMap<String, Double>, double[], int, double) - Method in class org.textensor.stochdiff.disc.TreeBoxDiscretizer

buildGrid(double, HashMap<String, Double>, double[], double) - Method in class org.textensor.stochdiff.disc.TreeCurvedElementDiscretizer

buildGUI() - Method in class org.catacomb.druid.build.Druid

BuildInfo - Class in org.catacomb.interlish.version

BuildInfo() - Constructor for class org.catacomb.interlish.version.BuildInfo

buildManifest() - Method in class org.catacomb.druid.manifest.MultiManifester

BuildPaintInstructor - Interface in org.catacomb.graph.gui

buildPaintInstructor - Variable in class org.catacomb.graph.gui.PickWorldCanvas

BuildPaintMaster - Interface in org.catacomb.graph.gui

buildTree(IcingPoint[], int, double) - Method in class org.textensor.vis.SceneGraphBuilder

buildViewable(Object) - Method in class org.textensor.vis.Icing3DViewer

buildViewable(Object) - Method in interface org.textensor.vis.Visualizer

bUnderline - Variable in class org.catacomb.druid.xtext.base.Guise

but1 - Variable in class org.catacomb.druid.dialog.QuestionDialogController

but2 - Variable in class org.catacomb.druid.dialog.QuestionDialogController

but3 - Variable in class org.catacomb.druid.dialog.QuestionDialogController

Button - Class in org.catacomb.druid.blocks

Button() - Constructor for class org.catacomb.druid.blocks.Button

Button(String) - Constructor for class org.catacomb.druid.blocks.Button

button - Variable in class org.catacomb.druid.gui.edit.DruButton

button - Variable in class org.catacomb.druid.swing.RolloverEffect

button - Variable in class org.catacomb.graph.gui.Mouse

button - Variable in class org.catacomb.graph.gui.RolloverEffect

Button - Interface in org.catacomb.interlish.structure

button - Variable in class org.textensor.vis.SceneGraphViewer

button1() - Method in class org.catacomb.druid.dialog.QuestionDialogController

button2() - Method in class org.catacomb.druid.dialog.QuestionDialogController

button3() - Method in class org.catacomb.druid.dialog.QuestionDialogController

buttons - Variable in class org.catacomb.druid.swing.DRadioButtons

ByteAccumulator - Class in org.catacomb.movie.gif

ByteAccumulator(int) - Constructor for class org.catacomb.movie.gif.ByteAccumulator

ByteAccumulator(byte[]) - Constructor for class org.catacomb.movie.gif.ByteAccumulator

bytes - Variable in class org.catacomb.dataview.read.NumericContentReader

bytes - Variable in class org.catacomb.dataview.read.XMLContentReader

C

cable - Class in org.textensor.stochdiff.neuroml

cable() - Constructor for class org.textensor.stochdiff.neuroml.cable

cable - Variable in class org.textensor.stochdiff.neuroml.segment

cableGroups - Variable in class org.textensor.stochdiff.neuroml.cell

cables - Variable in class org.textensor.stochdiff.neuroml.cell

cables - Variable in class org.textensor.stochdiff.neuroml.MorphMLCableGroup

cache - Variable in class org.catacomb.druid.build.Context

cache - Static variable in class org.catacomb.graph.drawing.IconImageCache

cache(int) - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

cacheAction(String) - Static method in class org.catacomb.report.E

cacheAction(String) - Static method in class org.textensor.report.E

cacheAsFile(int) - Method in class org.catacomb.graph.drawing.IconImage

cacheBinary() - Method in class org.catacomb.dataview.DataviewController

cachedAction - Static variable in class org.catacomb.report.E

cachedAction - Static variable in class org.textensor.report.E

cacheData(File, String) - Method in class org.catacomb.dataview.DataviewController

cachedFont - Variable in class org.catacomb.druid.xtext.base.Guise

cacheDir(File, String) - Method in class org.catacomb.druid.util.FileChooser

cachedLimits - Variable in class org.catacomb.druid.xtext.base.TextBlock

cachedPoints - Variable in class org.textensor.vis.Icing3DViewer

cachePlayer(Object) - Method in class org.catacomb.interlish.resource.Role

cachePosition() - Method in class org.catacomb.graph.drawing.ShapePoint

cachePositions() - Method in class org.catacomb.graph.drawing.Shape

cacheTime - Variable in class org.catacomb.druid.xtext.base.Guise

cacheTime - Variable in class org.catacomb.druid.xtext.base.TextBlock

cacheTime - Variable in class org.catacomb.numeric.data.StackSlice

calcClass - Variable in enum org.textensor.stochdiff.SDCalcType

calculateArea() - Method in class org.catacomb.numeric.difnet.model.BasicStructureLink

calculateFixedNodeCurrents(NetMapNode[]) - Method in class org.catacomb.numeric.difnet.calc.NetDiffuser

calculation - Variable in class org.textensor.stochdiff.model.SDRun

calculationType - Variable in class org.textensor.stochdiff.SDCalc

canAdvance() - Method in class org.catacomb.dataview.FrameController

canAdvance() - Method in class org.catacomb.dataview.gui.FramePlayerController

canAdvance() - Method in class org.catacomb.graph.gui.MovieDisplay

cancel() - Method in class org.catacomb.druid.dialog.ConfirmationDialogController

cancel() - Method in class org.catacomb.druid.dialog.FolderDialogController

cancel() - Method in class org.catacomb.druid.dialog.NamingDialogController

canGet(String) - Method in interface org.catacomb.interlish.structure.PageSupplier

canImport(JComponent, DataFlavor[]) - Method in class org.catacomb.druid.swing.dnd.InternalTransferHandler

canMake(String) - Method in interface org.catacomb.druid.build.PanelFactory

canMake(String) - Method in class org.catacomb.druid.gui.base.DruKitPanel

canPress(int) - Static method in class org.catacomb.druid.swing.dnd.Region

canRead(String) - Method in interface org.catacomb.dataview.formats.DataReader

canRead(String) - Method in class org.catacomb.dataview.formats.MeshDataReader

canRead(String) - Method in class org.catacomb.dataview.formats.TableDataReader

canSupply(String, String) - Method in interface org.catacomb.interlish.structure.Supplier

Canvas - Class in org.catacomb.druid.blocks

Canvas() - Constructor for class org.catacomb.druid.blocks.Canvas

canvas - Variable in class org.catacomb.druid.gui.base.DruScratchPanel

canvas - Variable in class org.catacomb.druid.gui.base.DruScrollableTextPanel

canvas - Variable in class org.catacomb.druid.gui.base.DruTextPanel

canvas - Variable in class org.catacomb.druid.swing.dnd.ClickableRegionStore

canvas - Variable in class org.catacomb.druid.swing.dnd.RegionBoard

canvas - Variable in class org.catacomb.graph.gui.GraphContextMenu

canvas - Variable in class org.catacomb.graph.gui.Mouse

canvas - Variable in class org.textensor.vis.SceneGraphViewer

canvasColor - Variable in class org.catacomb.druid.blocks.AssemblyPanel

canvasColor - Variable in class org.catacomb.druid.gui.base.DruAssemblyPanel

canvasHeight - Variable in class org.catacomb.graph.gui.Mouse

CanvasTest - Class in org.catacomb.graph.gui

CanvasTest() - Constructor for class org.catacomb.graph.gui.CanvasTest

canvasWidth - Variable in class org.catacomb.graph.gui.Mouse

capacitance - Variable in class org.catacomb.numeric.difnet.calc.NetMapLink

capacitance - Variable in class org.catacomb.numeric.difnet.calc.NetMapNode

capacitance - Variable in class org.catacomb.numeric.difnet.model.BasicStateLink

capacitance - Variable in class org.catacomb.numeric.difnet.model.BasicStateNode

capacitance - Variable in class org.catacomb.numeric.difnet.model.BasicStructureLink

capacitance - Variable in class org.catacomb.numeric.difnet.model.BasicStructureNode

capitalize(String) - Static method in class org.catacomb.util.StringUtil

cardLayout - Variable in class org.catacomb.druid.swing.DCardPanel

cardLayout - Variable in class org.catacomb.druid.swing.DInfoArea

cardLayout - Variable in class org.catacomb.druid.swing.DRadioButtons

cardLayout - Variable in class org.catacomb.druid.swing.DScrollablePanel

cardLayout - Variable in class org.catacomb.druid.swing.DToolablePanel

CardPanel - Class in org.catacomb.druid.blocks

CardPanel() - Constructor for class org.catacomb.druid.blocks.CardPanel

CardSelectionEffect - Class in org.catacomb.druid.blocks

CardSelectionEffect() - Constructor for class org.catacomb.druid.blocks.CardSelectionEffect

cardToShow - Variable in class org.catacomb.druid.gui.base.DruCardSelectionEffect

caretBlock - Variable in class org.catacomb.druid.xtext.canvas.KeyWriter

caretDown() - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

caretLeft() - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

caretPos - Variable in class org.catacomb.druid.swing.DDropCanvas

caretPos - Variable in class org.catacomb.druid.xtext.canvas.KeyWriter

caretRight() - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

caretUp() - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

Carrot - Class in org.catacomb.numeric.geom

Carrot() - Constructor for class org.catacomb.numeric.geom.Carrot

CaseRelayBody - Class in org.catacomb.act

CaseRelayBody(String) - Constructor for class org.catacomb.act.CaseRelayBody

catalogID - Variable in class org.catacomb.serial.state.TypeClass

Catalyst - Class in org.textensor.stochdiff.model

Catalyst() - Constructor for class org.textensor.stochdiff.model.Catalyst

catalyst - Variable in class org.textensor.stochdiff.model.Reaction

CatalyzedReaction - Class in org.textensor.stochdiff.model

CatalyzedReaction() - Constructor for class org.textensor.stochdiff.model.CatalyzedReaction

cbg - Variable in class org.catacomb.druid.swing.DSplitPaneDivider

cbg - Variable in class org.catacomb.graph.gui.IconButton

cbg - Static variable in class org.catacomb.graph.gui.IconRadioButton

cbgd - Variable in class org.catacomb.druid.swing.DSplitPaneDivider

CCViz - Class in org.catacomb.dataview

CCViz() - Constructor for class org.catacomb.dataview.CCViz

CCViz3D - Class in org.textensor.vis

CCViz3D() - Constructor for class org.textensor.vis.CCViz3D

CCVizController - Class in org.catacomb.dataview.gui

CCVizController() - Constructor for class org.catacomb.dataview.gui.CCVizController

CCVizRoot - Class in org.catacomb.dataview

CCVizRoot() - Constructor for class org.catacomb.dataview.CCVizRoot

CCVizTmp - Class in org.catacomb.dataview

CCVizTmp() - Constructor for class org.catacomb.dataview.CCVizTmp

cdataHM - Variable in class org.catacomb.serial.xml.XMLTokenizer

cdataHM - Variable in class org.textensor.xml.XMLTokenizer

cell - Class in org.textensor.stochdiff.neuroml

cell() - Constructor for class org.textensor.stochdiff.neuroml.cell

CellPoint - Class in org.catacomb.numeric.difnet

CellPoint() - Constructor for class org.catacomb.numeric.difnet.CellPoint

CellPoint(double, double, double, double, int, int) - Constructor for class org.catacomb.numeric.difnet.CellPoint

cells - Variable in class org.textensor.stochdiff.neuroml.morphml

Center - Class in org.catacomb.druid.blocks

Center() - Constructor for class org.catacomb.druid.blocks.Center

CENTER - Static variable in class org.catacomb.druid.gui.base.DruFlowPanel

CenterFlowPanel - Class in org.catacomb.druid.blocks

CenterFlowPanel() - Constructor for class org.catacomb.druid.blocks.CenterFlowPanel

centerOfGravity(double[], double[]) - Static method in class org.catacomb.graph.gui.Geom

centroidize() - Method in class org.textensor.vis.VolElt

change_letter(int, int) - Static method in class org.catacomb.util.DiffPrint.Base

changed(Object) - Method in interface org.catacomb.interlish.structure.ChangeNotifiable

changed_flag - Variable in class org.catacomb.util.Diff.file_data

Array, indexed by real origin-1 line number, containing true for a line that is an insertion or a deletion.

changedAfter(TimeComparable) - Method in interface org.catacomb.interlish.structure.TimeComparable

changedSince(TouchTimed) - Method in class org.catacomb.interlish.content.PrimitiveValue

changedUpdate(DocumentEvent) - Method in class org.catacomb.druid.swing.DTextArea

changedUpdate(DocumentEvent) - Method in class org.catacomb.druid.swing.DTextField

changedWhileFocused - Variable in class org.catacomb.druid.swing.DTextArea

changedWhileFocused - Variable in class org.catacomb.druid.swing.DTextField

ChangeEvent - Class in org.catacomb.be

ChangeEvent() - Constructor for class org.catacomb.be.ChangeEvent

ChangeEvent(String, Object) - Constructor for class org.catacomb.be.ChangeEvent

ChangeEvent(ChangeEvent) - Constructor for class org.catacomb.be.ChangeEvent

changeNotifiable - Variable in class org.catacomb.druid.swing.dnd.RegionBoard

changeNotifiable - Variable in class org.catacomb.druid.xtext.edit.GuiseController

ChangeNotifiable - Interface in org.catacomb.interlish.structure

ChangeNotifier - Interface in org.catacomb.interlish.structure

ChangeTime - Interface in org.catacomb.interlish.structure

changeTime - Variable in class org.catacomb.numeric.data.BlockStack

channels - Variable in class org.catacomb.numeric.data.EventSequence

char_out(byte, OutputStream) - Method in class org.catacomb.movie.gif.LZWEncoder

check(String) - Static method in class org.catacomb.dataview.test.TestReader

checkActivate(int, int) - Method in class org.catacomb.graph.gui.BoxSelectionHandler

checkAddPackage(Object) - Method in class org.catacomb.interlish.reflect.ReflectionConstructor

checkAddPackage(Object) - Method in class org.textensor.xml.ReflectionInstantiator

Checkbox - Class in org.catacomb.druid.blocks

Checkbox() - Constructor for class org.catacomb.druid.blocks.Checkbox

Checkbox(String) - Constructor for class org.catacomb.druid.blocks.Checkbox

checkBox - Variable in class org.catacomb.druid.swing.CheckListCellRenderer

checkBox - Variable in class org.catacomb.druid.swing.CheckTreeRenderer

CHECKBOX - Static variable in class org.catacomb.druid.swing.DPopLabel

CheckboxList - Class in org.catacomb.druid.blocks

CheckboxList() - Constructor for class org.catacomb.druid.blocks.CheckboxList

CheckboxMenuItem - Class in org.catacomb.druid.blocks

CheckboxMenuItem() - Constructor for class org.catacomb.druid.blocks.CheckboxMenuItem

CheckboxMenuItem(String) - Constructor for class org.catacomb.druid.blocks.CheckboxMenuItem

CheckboxTree - Class in org.catacomb.druid.blocks

CheckboxTree() - Constructor for class org.catacomb.druid.blocks.CheckboxTree

checkConsumerSuppliers() - Method in class org.catacomb.druid.market.ProducerConsumerBoard

checkContains(String) - Method in class org.catacomb.druid.swing.DValueHistory

checkDeBall() - Method in class org.textensor.vis.IcingPoint

checkDoubleSpace() - Method in class org.catacomb.movie.gif.ByteAccumulator

checkHasPositions() - Method in class org.textensor.stochdiff.model.Segment

checkInit() - Method in class org.catacomb.druid.dialog.DialogController

checkIsSelected(String) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

checkLayoutSize(Container, boolean) - Method in class org.catacomb.druid.swing.split.SplitterLayout

CheckListCellRenderer - Class in org.catacomb.druid.swing

CheckListCellRenderer(ListCellRenderer) - Constructor for class org.catacomb.druid.swing.CheckListCellRenderer

checkName() - Method in class org.catacomb.druid.swing.DCheckboxMenuItem

checkName() - Method in class org.catacomb.druid.swing.DMenuItem

checkNames() - Method in class org.catacomb.druid.swing.DPopLabel

checkNbuf() - Method in class org.catacomb.druid.build.InfoAggregator

checkOptions() - Method in class org.catacomb.druid.swing.DChoice

checkOtherComponents() - Method in class org.catacomb.druid.swing.split.DSplitterBar

checkPanelCount(int) - Method in class org.catacomb.druid.blocks.MultiPanel

checkProvider() - Static method in class org.catacomb.interlish.service.AppPersist

checkReceiverProducers(Receiver, String) - Method in class org.catacomb.druid.market.ProducerConsumerBoard

checkResolved(HashMap<String, Segment>) - Method in class org.textensor.stochdiff.model.Segment

checkScript(Object) - Method in interface org.catacomb.interlish.service.ScriptChecker

checkScripts(Object) - Method in class org.catacomb.interlish.service.ScriptManager

checkSeen(String, String, int[]) - Static method in class org.catacomb.druid.dialog.Dialoguer

CheckSeenDialogController - Class in org.catacomb.druid.dialog

CheckSeenDialogController() - Constructor for class org.catacomb.druid.dialog.CheckSeenDialogController

checkSize() - Method in class org.catacomb.druid.swing.DValueHistory

checkStateSettable() - Method in class org.catacomb.druid.swing.DFrame

checkSuppliersFor(Consumer, String) - Method in class org.catacomb.druid.market.ProducerConsumerBoard

CheckTreeRenderer - Class in org.catacomb.druid.swing

CheckTreeRenderer(TreeCellRenderer, CheckTreeSelectionModel) - Constructor for class org.catacomb.druid.swing.CheckTreeRenderer

CheckTreeSelectionModel - Class in org.catacomb.druid.swing

CheckTreeSelectionModel(TreeModel) - Constructor for class org.catacomb.druid.swing.CheckTreeSelectionModel

checkViewers(String, Visible) - Method in class org.catacomb.druid.market.ProducerConsumerBoard

checkXML(String, boolean) - Static method in class org.catacomb.serial.xml.XMLChecker

checkXML(String, boolean) - Static method in class org.textensor.xml.XMLChecker

Child - Interface in org.catacomb.interlish.structure

childChanged(Object) - Method in class org.catacomb.druid.xtext.base.DMItem

childChanged(Object) - Method in class org.catacomb.druid.xtext.canvas.BoardRepainterDMItem

childChanged(ChangeEvent) - Method in interface org.catacomb.interlish.structure.ChildListener

childListener - Variable in class org.catacomb.interlish.content.PrimitiveValue

ChildListener - Interface in org.catacomb.interlish.structure

childPeerHM - Variable in class org.catacomb.druid.util.tree.RelationNode

childRemoved(Related, Related) - Method in class org.catacomb.druid.util.tree.RelationTree

children - Variable in class org.catacomb.druid.util.examples.DemoNode

children - Variable in class org.catacomb.druid.util.tree.ArrayListNode

children - Variable in class org.catacomb.numeric.data.NumDataStore

children - Variable in class org.catacomb.util.StringTree

ChildrenOf - Class in org.catacomb.druid.blocks

ChildrenOf() - Constructor for class org.catacomb.druid.blocks.ChildrenOf

Choice - Class in org.catacomb.druid.blocks

Choice() - Constructor for class org.catacomb.druid.blocks.Choice

Choice(String) - Constructor for class org.catacomb.druid.blocks.Choice

Choice - Interface in org.catacomb.interlish.structure

ChoiceOptionsBoard - Class in org.catacomb.druid.market

ChoiceOptionsBoard() - Constructor for class org.catacomb.druid.market.ChoiceOptionsBoard

chooseFolder() - Method in class org.catacomb.druid.dialog.FolderDialogController

chooser - Static variable in class org.catacomb.druid.util.FileChooser

Circle - Class in org.catacomb.graph.drawing

Circle() - Constructor for class org.catacomb.graph.drawing.Circle

CIRCLE - Static variable in class org.catacomb.graph.gui.PickablePoint

cl_block(OutputStream) - Method in class org.catacomb.movie.gif.LZWEncoder

cl_hash(int) - Method in class org.catacomb.movie.gif.LZWEncoder

claims(byte[]) - Method in interface org.catacomb.dataview.read.ContentType

claims(byte[]) - Method in class org.catacomb.dataview.read.CustomJarContentType

claims(byte[]) - Method in class org.catacomb.dataview.read.NumericContentType

claims(byte[]) - Method in class org.catacomb.dataview.read.XMLContentType

claims(byte[]) - Static method in class org.catacomb.serial.jar.CustomJar

claims(byte[], byte[]) - Static method in class org.catacomb.serial.jar.CustomJar

claimStatus - Variable in class org.catacomb.graph.gui.MouseHandler

CLASS - Static variable in class org.catacomb.interlish.reflect.ObjectBuilder

Classdef - Class in org.catacomb.act

Classdef() - Constructor for class org.catacomb.act.Classdef

ClassInstantiator - Class in org.catacomb.interlish.reflect

ClassInstantiator() - Constructor for class org.catacomb.interlish.reflect.ClassInstantiator

className - Variable in class org.catacomb.act.Classdef

CLASSPATH - Static variable in class org.catacomb.druid.manifest.DecFile

ClassRole - Class in org.catacomb.druid.manifest

ClassRole(String, String, String) - Constructor for class org.catacomb.druid.manifest.ClassRole

ClassRole() - Constructor for class org.catacomb.druid.manifest.ClassRole

clear() - Method in class org.catacomb.druid.build.DruidTargetStore

clear() - Method in class org.catacomb.druid.build.GUIStore

clear() - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

clear() - Method in class org.catacomb.druid.gui.edit.DruCheckboxTreePanel

clear() - Method in class org.catacomb.druid.gui.edit.DruDropBox

clear() - Method in class org.catacomb.druid.gui.edit.DruListPanel

clear() - Method in class org.catacomb.druid.gui.edit.DruLogPanel

clear() - Method in class org.catacomb.druid.gui.edit.DruToggleListPanel

clear() - Method in class org.catacomb.druid.gui.edit.DruTreePanel

clear() - Method in class org.catacomb.druid.guimodel.Log

clear() - Method in class org.catacomb.druid.swing.DCheckboxTree

clear() - Method in class org.catacomb.druid.swing.DDropCanvas

clear() - Method in class org.catacomb.druid.swing.dnd.RegionStore

clear() - Method in class org.catacomb.druid.swing.DPopLabel

clear() - Method in class org.catacomb.druid.swing.DTree

clear() - Method in class org.catacomb.graph.gui.BoxSelectionHandler

clear() - Method in class org.catacomb.graph.gui.Builder

clear() - Method in class org.catacomb.graph.gui.HoverTimer

clear() - Method in class org.catacomb.graph.gui.MouseHandler

clear() - Method in class org.catacomb.graph.gui.PickStore

clear() - Method in class org.catacomb.interlish.content.ColorValue

clear() - Method in class org.catacomb.interlish.content.StringValue

clear() - Method in interface org.catacomb.interlish.structure.InfoLog

clear() - Method in interface org.catacomb.interlish.structure.TreeDisplay

clear() - Method in class org.catacomb.numeric.data.BlockStack

clear() - Method in class org.catacomb.numeric.data.DDSubSlice

clear() - Method in class org.catacomb.numeric.data.IntegerArray

clear() - Method in class org.catacomb.numeric.data.StackSlice

clear() - Method in class org.catacomb.serial.quickxml.Element

clear() - Method in class org.catacomb.util.Diff.file_data

Allocate changed array for the results of comparison.

clear_flg - Variable in class org.catacomb.movie.gif.LZWEncoder

clearActive() - Method in class org.catacomb.druid.swing.dnd.RegionStore

clearBorder() - Method in class org.catacomb.druid.swing.DPanel

clearBufferedSelection() - Method in class org.catacomb.druid.swing.DList

clearCache() - Method in class org.catacomb.numeric.data.AnimSlice

clearCache() - Method in class org.catacomb.numeric.data.DDSlice

clearCache() - Method in class org.catacomb.numeric.data.DSlice

clearCache() - Method in class org.catacomb.numeric.data.StackMultipleSlice

clearCache() - Method in class org.catacomb.numeric.data.StackSingleSlice

clearCache() - Method in class org.catacomb.numeric.data.StackSlice

clearCache(File) - Static method in class org.catacomb.util.FileUtil

clearChildren() - Method in class org.catacomb.druid.util.tree.ArrayListNode

clearChildren() - Method in class org.catacomb.druid.util.tree.RelationNode

ClearCode - Variable in class org.catacomb.movie.gif.LZWEncoder

clearDragEcho() - Method in class org.catacomb.druid.swing.dnd.RegionDropTarget

clearHighlight() - Method in class org.catacomb.druid.swing.DTextArea

clearHighlight() - Method in class org.catacomb.graph.arbor.SegmentGraph

clearHighlight() - Method in class org.catacomb.interlish.content.StringValue

clearHyperlinkListeners() - Method in class org.catacomb.druid.swing.DHTMLPane

clearMark() - Method in class org.catacomb.graph.arbor.SegmentGraph

clearMultiOrdinate() - Method in class org.catacomb.graph.gui.DataView

clearObjectCache() - Method in class org.catacomb.druid.manifest.DecFile

clearRanges() - Method in class org.catacomb.graph.gui.WorldTransform

clearRegions() - Method in class org.catacomb.druid.swing.dnd.ClickableRegionStore

clearRegions() - Method in class org.catacomb.druid.swing.dnd.RegionBoard

clearSelect() - Method in class org.catacomb.graph.arbor.SegmentGraphVE

clearSelection() - Method in class org.catacomb.druid.gui.edit.DruChoice

clearSelection() - Method in class org.catacomb.druid.swing.DChoice

clearTextCache() - Method in class org.catacomb.druid.manifest.DecFile

clerks - Variable in class org.catacomb.druid.market.SupplyAgent

CLICK - Static variable in class org.catacomb.druid.swing.dnd.Region

clickable() - Method in class org.catacomb.druid.swing.dnd.Region

ClickableRegionStore - Class in org.catacomb.druid.swing.dnd

ClickableRegionStore(DTextCanvas) - Constructor for class org.catacomb.druid.swing.dnd.ClickableRegionStore

clickAction - Variable in class org.catacomb.druid.blocks.ScrollingCheckboxList

clickAction - Variable in class org.catacomb.druid.blocks.ScrollingList

ClickActor - Interface in org.catacomb.interlish.structure

clickActors - Variable in class org.catacomb.druid.gui.edit.DruListPanel

clickAreas - Variable in class org.catacomb.druid.blocks.List

clickAreas - Variable in class org.catacomb.druid.blocks.ScrollingCheckboxList

clickAreas - Variable in class org.catacomb.druid.blocks.ScrollingList

clicked(int, DruListPanel) - Method in class org.catacomb.druid.gui.base.DruListClickActor

clicked(Object) - Method in interface org.catacomb.interlish.structure.ClickActor

clickListener - Variable in class org.catacomb.druid.swing.DList

clickListener - Variable in class org.catacomb.graph.gui.Mouse

clickListener - Variable in class org.catacomb.graph.gui.PickHandler

ClickListener - Interface in org.catacomb.interlish.interact

clickReferent - Variable in class org.catacomb.druid.swing.DLabel

ClickZoomHandler - Class in org.catacomb.graph.gui

ClickZoomHandler() - Constructor for class org.catacomb.graph.gui.ClickZoomHandler

clickZoomHandler - Variable in class org.catacomb.graph.gui.WorldCanvas

Clipboard - Class in org.catacomb.interlish.interact

Clipboard() - Constructor for class org.catacomb.interlish.interact.Clipboard

clisten - Variable in class org.catacomb.druid.swing.DFrame

Closable - Interface in org.catacomb.interlish.structure

close() - Method in class org.catacomb.druid.dialog.ProgressLogDialogController

close() - Method in class org.catacomb.druid.dialog.TextDialogController

close() - Method in class org.catacomb.druid.gui.base.DruAutonomousDialog

close() - Method in class org.catacomb.druid.gui.base.DruDialog

close() - Method in class org.catacomb.druid.swing.DDialog

close() - Method in interface org.catacomb.interlish.structure.Closable

close() - Method in class org.catacomb.numeric.data.DataTable

CLOSE - Static variable in class org.catacomb.serial.xml.XMLToken

close() - Method in class org.textensor.stochdiff.ResultWriter

CLOSE - Static variable in class org.textensor.xml.XMLToken

closeAction - Variable in class org.catacomb.druid.blocks.EditorWindow

closed() - Method in class org.catacomb.datalish.SpritePart

closed() - Method in interface org.catacomb.druid.event.ClosureListener

closed() - Method in class org.catacomb.druid.gui.base.DruFrame

CLOSED - Static variable in class org.catacomb.graph.drawing.FixedDrawingComponent

CLOSED - Static variable in class org.catacomb.interlish.content.Polypoint

CLOSED - Static variable in class org.catacomb.interlish.content.RShape

closed - Variable in class org.textensor.stochdiff.ResultWriter

closedIcon - Static variable in class org.catacomb.druid.swing.TCRenderer

CloseEffect - Class in org.catacomb.druid.blocks

CloseEffect() - Constructor for class org.catacomb.druid.blocks.CloseEffect

closeProgressLogger() - Static method in class org.catacomb.druid.dialog.Dialoguer

closes(XMLToken) - Method in class org.catacomb.serial.xml.XMLToken

closes(XMLToken) - Method in class org.textensor.xml.XMLToken

closeStream - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

closure - Variable in class org.catacomb.graph.drawing.GenericShape

closure - Variable in class org.catacomb.interlish.content.Polypoint

closure - Variable in class org.catacomb.interlish.content.RShape

ClosureListener - Interface in org.catacomb.druid.event

cmax - Variable in class org.catacomb.dataview.gui.Mesh2plusTimeController

cmin - Variable in class org.catacomb.dataview.gui.Mesh2plusTimeController

CODE_DATA_SET_ARRAY - Static variable in class org.catacomb.dataview.read.NumericDataRW

CODE_FLOAT_SCALAR - Static variable in class org.catacomb.dataview.read.NumericDataRW

CODE_FLOAT_VECTOR - Static variable in class org.catacomb.dataview.read.NumericDataRW

CODE_NUM_DATA_SET - Static variable in class org.catacomb.dataview.read.NumericDataRW

codetab - Variable in class org.catacomb.movie.gif.LZWEncoder

CodgerTask - Class in org.catacomb.interlish.interact

CodgerTask(File, String[]) - Constructor for class org.catacomb.interlish.interact.CodgerTask

cof - Static variable in class org.catacomb.numeric.math.Random

cof - Static variable in class org.textensor.stochdiff.numeric.math.MersenneTwister

cof - Static variable in class org.textensor.stochdiff.numeric.math.RandomMath

cog(double[]) - Method in class org.catacomb.graph.drawing.Shape

cog(Position[]) - Static method in class org.textensor.stochdiff.geom.Geom

coHandler - Variable in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

col - Variable in class org.catacomb.dataview.PlotElement

colIcon - Variable in class org.catacomb.druid.swing.ui.DruidTreeUI

collapse() - Method in class org.catacomb.druid.gui.base.DruCollapsiblePanel

collapse() - Method in class org.catacomb.druid.gui.edit.DruExpandingTextArea

collapse() - Method in class org.catacomb.druid.xtext.data.XType

collapsed - Variable in class org.catacomb.druid.gui.base.DruCollapsiblePanel

collapsed - Variable in class org.catacomb.druid.gui.edit.DruExpandingTextArea

CollapsiblePanel - Class in org.catacomb.druid.blocks

CollapsiblePanel() - Constructor for class org.catacomb.druid.blocks.CollapsiblePanel

color - Variable in class org.catacomb.dataview.build.Displayable

color - Variable in class org.catacomb.dataview.display.Displayable

color - Variable in class org.catacomb.dataview.model.Plottable

color - Variable in class org.catacomb.druid.swing.DDotsPanel

color - Variable in class org.catacomb.druid.swing.DHRPanel

color - Variable in class org.catacomb.graph.gui.Labellee

color - Variable in class org.catacomb.numeric.data.XYVectorScene

color - Variable in class org.textensor.vis.IcingPoint

ColorChoice - Class in org.catacomb.druid.blocks

ColorChoice() - Constructor for class org.catacomb.druid.blocks.ColorChoice

ColorChooser - Class in org.catacomb.druid.util

ColorChooser() - Constructor for class org.catacomb.druid.util.ColorChooser

colorCounter - Static variable in class org.catacomb.graph.gui.DisplayStyleSet

ColorDef - Class in org.catacomb.util

ColorDef() - Constructor for class org.catacomb.util.ColorDef

colorDepth - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

Colored - Interface in org.catacomb.interlish.structure

colored3d - Variable in class org.textensor.vis.IcingPoint

colorizeAndApplyStylesheet() - Method in class org.catacomb.druid.swing.DHTMLPane

colorMap() - Method in class org.catacomb.movie.gif.NeuQuant

ColorMapped - Interface in org.catacomb.interlish.structure

ColorNames - Enum in org.catacomb.datalish

ColorNames(String) - Constructor for enum org.catacomb.datalish.ColorNames

colorNames - Static variable in class org.catacomb.druid.color.StandardPalette

colorPanel - Variable in class org.catacomb.druid.swing.CheckListCellRenderer

colorPanel - Variable in class org.catacomb.druid.swing.DListColorRenderer

colors - Static variable in class org.catacomb.druid.color.StandardPalette

Colors - Class in org.catacomb.druid.swing.split

Colors() - Constructor for class org.catacomb.druid.swing.split.Colors

colors - Variable in class org.catacomb.interlish.content.ColorTable

colors - Variable in class org.catacomb.util.StandardColors

colorSet - Variable in class org.catacomb.druid.build.Context

colorSet - Variable in class org.catacomb.graph.gui.AxisGraphDivider

ColorSet - Class in org.catacomb.interlish.content

ColorSet() - Constructor for class org.catacomb.interlish.content.ColorSet

colorTab - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

colorTable - Variable in class org.catacomb.druid.swing.GradientPanel

colorTable - Variable in class org.catacomb.graph.gui.Painter

ColorTable - Class in org.catacomb.interlish.content

ColorTable(String) - Constructor for class org.catacomb.interlish.content.ColorTable

colorTableName - Variable in class org.catacomb.graph.gui.DisplayStyleSet

colorTables - Variable in class org.catacomb.graph.gui.DisplayStylesData

ColorUtil - Class in org.catacomb.util

ColorUtil() - Constructor for class org.catacomb.util.ColorUtil

colorValue - Variable in class org.catacomb.druid.gui.edit.DruColorChoice

ColorValue - Class in org.catacomb.interlish.content

ColorValue() - Constructor for class org.catacomb.interlish.content.ColorValue

ColorValue(int) - Constructor for class org.catacomb.interlish.content.ColorValue

ColorValue(String) - Constructor for class org.catacomb.interlish.content.ColorValue

ColorValueEditor - Interface in org.catacomb.interlish.structure

Column - Class in org.textensor.stochdiff.numeric.math

Column(int) - Constructor for class org.textensor.stochdiff.numeric.math.Column

Column(double[]) - Constructor for class org.textensor.stochdiff.numeric.math.Column

COLUMN - Static variable in class org.textensor.stochdiff.numeric.math.Matrix

columnNames - Variable in class org.catacomb.dataview.formats.TableDataHandler

columnNames - Variable in class org.catacomb.dataview.formats.TableDataReader

columns - Variable in class org.catacomb.numeric.data.DataTable

COMMENT - Static variable in class org.catacomb.serial.xml.XMLToken

COMMENT - Static variable in class org.textensor.xml.XMLToken

compare(BlockSignature, BlockSignature) - Method in class org.catacomb.act.SignatureComparator

compare(String, String) - Static method in class org.catacomb.util.DiffStrings

compare(String, String, boolean) - Static method in class org.catacomb.util.DiffStrings

compareNonWhitespace(String, String) - Static method in class org.catacomb.util.DiffStrings

compareseq(int, int, int, int) - Method in class org.catacomb.util.Diff

Compare in detail contiguous subsequences of the two files which are known, as a whole, to match each other.

complete - Variable in class org.textensor.stochdiff.model.ConcentrationSet

complete - Variable in class org.textensor.stochdiff.model.SurfaceDensitySet

ComplexState - Interface in org.catacomb.serial.state

componentHidden(ComponentEvent) - Method in class org.catacomb.druid.swing.DFrame

componentHidden(ComponentEvent) - Method in class org.catacomb.graph.gui.AboveBelowSplitPanel

ComponentInstance - Class in org.catacomb.serial.state

ComponentInstance() - Constructor for class org.catacomb.serial.state.ComponentInstance

componentMoved(ComponentEvent) - Method in class org.catacomb.druid.swing.DFrame

componentMoved(ComponentEvent) - Method in class org.catacomb.graph.gui.AboveBelowSplitPanel

componentResized(ComponentEvent) - Method in class org.catacomb.druid.swing.DFrame

componentResized(ComponentEvent) - Method in class org.catacomb.graph.gui.AboveBelowSplitPanel

components - Variable in class org.catacomb.druid.gui.base.PanelPack

componentShown(ComponentEvent) - Method in class org.catacomb.druid.swing.DFrame

componentShown(ComponentEvent) - Method in class org.catacomb.graph.gui.AboveBelowSplitPanel

CompoundView - Class in org.catacomb.dataview.build

CompoundView() - Constructor for class org.catacomb.dataview.build.CompoundView

compress(int, OutputStream) - Method in class org.catacomb.movie.gif.LZWEncoder

compress() - Method in class org.catacomb.util.StringTree

conc - Variable in class org.textensor.stochdiff.inter.SDState

CONC_OF_N - Static variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

CONC_OF_N - Static variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

concatenate(double[][]) - Static method in class org.catacomb.numeric.array.MDA

Concentration - Class in org.textensor.stochdiff.model

Concentration() - Constructor for class org.textensor.stochdiff.model.Concentration

concentrations - Variable in class org.textensor.stochdiff.model.ConcentrationSet

ConcentrationSet - Class in org.textensor.stochdiff.model

ConcentrationSet() - Constructor for class org.textensor.stochdiff.model.ConcentrationSet

concentrationSets - Variable in class org.textensor.stochdiff.model.InitialConditions

concHM - Variable in class org.textensor.stochdiff.model.ConcentrationSet

conciseTags - Variable in class org.catacomb.serial.xml.XMLWriter

conciseTags - Variable in class org.textensor.xml.XMLWriter

concSetHM - Variable in class org.textensor.stochdiff.model.InitialConditions

conductance - Variable in class org.catacomb.numeric.difnet.calc.NetMapLink

conductance - Variable in class org.catacomb.numeric.difnet.model.BasicStateLink

conductance - Variable in class org.catacomb.numeric.difnet.model.BasicStructureLink

conductance(double, double, double, double, double, double, double, double) - Static method in class org.catacomb.numeric.geom.Carrot

config - Variable in class org.catacomb.druid.blocks.WindowEditEffect

config - Variable in class org.catacomb.druid.gui.edit.DruWindowEditEffect

configPath - Variable in class org.catacomb.druid.build.Druid

ConfirmationDialogController - Class in org.catacomb.druid.dialog

ConfirmationDialogController() - Constructor for class org.catacomb.druid.dialog.ConfirmationDialogController

confirmationDialogController - Static variable in class org.catacomb.druid.dialog.Dialoguer

conG - Variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

conI - Variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

connect(Producer, Consumer) - Method in class org.catacomb.druid.market.ChoiceOptionsBoard

connect(Producer, Consumer) - Method in class org.catacomb.druid.market.InfoBoard

connect(Producer, Consumer) - Method in class org.catacomb.druid.market.LogBoard

connect(Producer, Consumer) - Method in class org.catacomb.druid.market.LogMessageBoard

connect(Producer, Consumer) - Method in class org.catacomb.druid.market.PageBoard

connect(Producer, Consumer) - Method in class org.catacomb.druid.market.ProducerConsumerBoard

connect(Producer, Consumer) - Method in class org.catacomb.druid.market.StatusBoard

connect(Producer, Consumer) - Method in class org.catacomb.druid.market.TreeBoard

ConnectionFlavor - Class in org.catacomb.interlish.content

ConnectionFlavor(String) - Constructor for class org.catacomb.interlish.content.ConnectionFlavor

connections - Variable in class org.textensor.stochdiff.numeric.morph.VolumeElement

connectionStyle - Variable in class org.textensor.vis.IcingPoint

connectors - Variable in class org.catacomb.graph.drawing.IconEditorController

connectRelay(DruActionRelay, Object) - Method in class org.catacomb.druid.gui.base.PanelPack

connectTo(SegmentGraphPoint) - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

connectTo(Socket) - Method in interface org.catacomb.interlish.structure.Plug

connectToPeer(Object, Object) - Method in interface org.catacomb.interlish.structure.MeshBuilder

connectToPeer(Object, Object) - Method in class org.catacomb.numeric.mesh.DifMeshBuilder

connectVisibleViewer(Visible, Viewer) - Method in class org.catacomb.druid.market.FocusBoard

connectVisibleViewer(Visible, Viewer) - Method in class org.catacomb.druid.market.ProducerConsumerBoard

connectVisibleViewer(Visible, Viewer) - Method in class org.catacomb.druid.market.TargetStoreBoard

connectVisibleViewer(Visible, Viewer) - Method in class org.catacomb.druid.market.TreeSelectionBoard

constantAspectRatio - Variable in class org.catacomb.graph.gui.WorldTransform

constructor - Variable in class org.catacomb.act.Classdef

Constructor - Interface in org.catacomb.interlish.structure

constructSlice(String) - Method in class org.catacomb.numeric.data.DataExtractor

consumer - Variable in class org.catacomb.druid.market.ConsumerAgent

Consumer - Interface in org.catacomb.interlish.structure

ConsumerAgent - Class in org.catacomb.druid.market

ConsumerAgent(Consumer, String, String) - Constructor for class org.catacomb.druid.market.ConsumerAgent

consumers - Variable in class org.catacomb.druid.market.ProducerConsumerBoard

contactArea - Variable in class org.textensor.stochdiff.numeric.morph.ElementConnection

ContainerBlock - Class in org.catacomb.druid.xtext.base

ContainerBlock() - Constructor for class org.catacomb.druid.xtext.base.ContainerBlock

ContainerPanel - Class in org.catacomb.druid.blocks

ContainerPanel() - Constructor for class org.catacomb.druid.blocks.ContainerPanel

contains(int, int) - Method in class org.catacomb.druid.swing.dnd.Region

contains(double, double) - Method in class org.catacomb.graph.gui.PickableRegion

contains(String) - Method in interface org.catacomb.interlish.structure.FlatDataStore

containsAttribute(String[][], int, String) - Method in class org.catacomb.xdoc.TextTagger

containsCard(String) - Method in class org.catacomb.druid.gui.base.DruPseudoCardPanel

containsDir(String) - Method in class org.catacomb.util.DirRef

containsPoint(IntPosition) - Method in class org.catacomb.druid.swing.DTextCanvas

containsSource(String) - Method in class org.catacomb.druid.load.XMLStore

content - Variable in class org.catacomb.druid.blocks.BrowserPanel

content - Variable in class org.catacomb.druid.blocks.HTMLContent

content - Variable in class org.catacomb.druid.blocks.HTMLPanel

content - Variable in class org.catacomb.druid.blocks.ScrollableTextPanel

content - Variable in class org.catacomb.druid.blocks.ScrollingHTMLPanel

content - Variable in class org.catacomb.druid.blocks.TextPanel

content - Static variable in class org.catacomb.interlish.interact.Clipboard

content - Variable in class org.catacomb.serial.xml.XMLHolder

content - Variable in class org.textensor.stochdiff.neuroml.meta

content - Variable in class org.textensor.xml.XMLReader.XMLHolder

contentLoader - Variable in class org.catacomb.interlish.reflect.ObjectBuilder

ContentLoader - Interface in org.catacomb.interlish.service

contentLoader - Static variable in class org.catacomb.interlish.service.ResourceAccess

contentPanel - Variable in class org.catacomb.druid.gui.base.DruCollapsiblePanel

contentReader - Variable in class org.catacomb.dataview.DataviewController

ContentReader - Interface in org.catacomb.dataview.read

contentSizeChanged() - Method in class org.catacomb.druid.swing.DTextCanvas

ContentType - Interface in org.catacomb.dataview.read

contentType - Static variable in class org.catacomb.interlish.interact.Clipboard

contest(int, int, int) - Method in class org.catacomb.movie.gif.NeuQuant

Context - Class in org.catacomb.druid.build

Context() - Constructor for class org.catacomb.druid.build.Context

Context(Context) - Constructor for class org.catacomb.druid.build.Context

context - Variable in class org.catacomb.druid.build.Druid

context - Variable in class org.catacomb.druid.gui.base.DruKitPanel

context - Variable in class org.catacomb.druid.guimodel.LogEntry

context - Variable in class org.catacomb.druid.swing.DPlainTextEditor

context - Static variable in class org.catacomb.interlish.service.Env

context - Variable in class org.catacomb.util.DiffPrint.ContextPrint

ContextMenu - Interface in org.catacomb.interlish.structure

ContingencyGroup - Class in org.catacomb.druid.build

ContingencyGroup(String) - Constructor for class org.catacomb.druid.build.ContingencyGroup

contingencyGroup - Variable in class org.catacomb.druid.gui.edit.DruToggleButton

contingencyGroups - Variable in class org.catacomb.druid.build.Context

contingents - Variable in class org.catacomb.druid.build.ContingencyGroup

continuation - Variable in class org.textensor.stochdiff.ResultWriter

continueOutput() - Method in class org.textensor.stochdiff.model.SDRun

contract(double) - Method in class org.catacomb.graph.drawing.Shape

controlConnect(Object, Field, String) - Method in class org.catacomb.druid.build.AnnotationConnector

controller - Variable in class org.catacomb.dataview.DataViewer

controller - Variable in class org.catacomb.dataview.DView

Controller - Interface in org.catacomb.interlish.structure

controllerClass - Variable in class org.catacomb.druid.blocks.Application

controllerClass - Variable in class org.catacomb.druid.blocks.AutonomousDialog

controllerClass - Variable in class org.catacomb.druid.blocks.AutonomousPanel

controllerClass - Variable in class org.catacomb.druid.blocks.EditorWindow

controllerClass - Variable in class org.catacomb.druid.blocks.Insert

controllerPath - Variable in class org.catacomb.druid.gui.base.DruRoot

ControllerSpecifier - Interface in org.catacomb.interlish.structure

controlPanel - Variable in class org.catacomb.graph.gui.DataDisplay

controlPanel - Variable in class org.catacomb.graph.gui.MovieDisplay

ControlPoint - Annotation Type in org.catacomb.interlish.annotation

controls - Variable in class org.catacomb.druid.blocks.DataDisplay

controls - Variable in class org.catacomb.druid.blocks.MovieDisplay

convert3To4(char[], int, char[]) - Static method in class org.catacomb.util.Base64

convert4To3(byte[], byte[], int) - Static method in class org.catacomb.util.Base64

copy() - Method in class org.catacomb.be.Position

copy() - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

copy() - Method in class org.catacomb.graph.drawing.VectorIcon

copy() - Method in class org.catacomb.interlish.content.ColorSet

copy() - Method in class org.catacomb.numeric.data.DataSlice

copy() - Method in class org.catacomb.numeric.math.Matrix

copy() - Method in class org.textensor.stochdiff.numeric.math.Column

copy() - Method in class org.textensor.stochdiff.numeric.math.Matrix

Copyable - Interface in org.catacomb.interlish.structure

copyArray(double[]) - Method in class org.catacomb.graph.drawing.Shape

copyArray(String[]) - Static method in class org.catacomb.util.StringUtil

copyAttributes(Attribute[]) - Method in class org.catacomb.serial.om.OmElement

copyBinaryResource(Logger, String, File) - Static method in class org.catacomb.interlish.util.JUtil

copyColorSet() - Method in class org.catacomb.druid.build.Context

copyDArray(double[]) - Static method in class org.catacomb.util.ArrayUtil

copyFile(File, File) - Static method in class org.catacomb.util.FileUtil

copyFile(File, File) - Static method in class org.textensor.util.FileUtil

copyFiles(File, File) - Method in class org.catacomb.dataview.BatchImageMaker

copyFrom(BooleanValue) - Method in class org.catacomb.interlish.content.BooleanValue

copyFrom(ColorValue) - Method in class org.catacomb.interlish.content.ColorValue

copyFrom(DoubleValue) - Method in class org.catacomb.interlish.content.DoubleValue

copyFrom(IntegerValue) - Method in class org.catacomb.interlish.content.IntegerValue

copyFrom(StringValue) - Method in class org.catacomb.interlish.content.StringValue

copyMarked() - Method in class org.catacomb.numeric.data.NumDataSet

copyMat() - Method in class org.catacomb.numeric.math.Matrix

copyMat() - Method in class org.textensor.stochdiff.numeric.math.Matrix

copyPositionArray(Position[]) - Static method in class org.catacomb.geom.Geom

copyXpts() - Method in class org.catacomb.datalish.SpritePart

copyYpts() - Method in class org.catacomb.datalish.SpritePart

coReader - Variable in class org.catacomb.dataview.formats.MeshDataReader

CornerCanvas - Class in org.catacomb.graph.gui

CornerCanvas(int, int) - Constructor for class org.catacomb.graph.gui.CornerCanvas

CornerPanel - Class in org.catacomb.graph.gui

CornerPanel(int, int, PickWorldCanvas) - Constructor for class org.catacomb.graph.gui.CornerPanel

cornerPanel - Variable in class org.catacomb.graph.gui.DataDisplay

cosine - Variable in class org.catacomb.be.Direction

cost - Variable in class org.catacomb.util.Diff

count - Variable in class org.catacomb.be.ChangeEvent

count - Variable in class org.catacomb.datalish.SceneConfig

count - Variable in class org.textensor.xml.XMLTokenizer

countAccessibleFields() - Method in class org.catacomb.act.Classdef

counter - Static variable in class org.catacomb.be.ChangeEvent

countLines(String) - Static method in class org.catacomb.util.StringUtil

coupleTo(VolumeElement, double) - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

couplingConstants - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

couplingConstants - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

couplingConstants - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

coverage(double[], double[], double, double, double, double, int) - Static method in class org.catacomb.graph.gui.Iconizer

cprob - Variable in class org.textensor.stochdiff.numeric.stochastic.NGoTable

CRC - Class in org.catacomb.util

CRC() - Constructor for class org.catacomb.util.CRC

createArrowButton() - Method in class org.catacomb.druid.swing.DComboBoxUI

createDefaultDivider() - Method in class org.catacomb.druid.swing.DSplitPaneUI

createDefaultDivider() - Method in class org.catacomb.graph.gui.AboveBelowSplitAxisPanelUI

createDefaultDivider() - Method in class org.catacomb.graph.gui.AboveBelowSplitPanelUI

createDefaultDivider() - Method in class org.catacomb.graph.gui.LeftRightSplitPanelUI

createDummySceneGraph() - Method in class org.textensor.vis.SceneGraphViewer

createImageIcon(String) - Static method in class org.catacomb.icon.IconLoader

createLightGraph(double) - Method in class org.textensor.vis.SceneGraphViewer

createUI(JComponent) - Static method in class org.catacomb.druid.swing.DComboBoxUI

createUI(JComponent) - Static method in class org.catacomb.druid.swing.DSplitPaneUI

createUI(JComponent) - Static method in class org.catacomb.druid.swing.ui.DruidTreeUI

createUI(JComponent, GraphColors) - Static method in class org.catacomb.graph.gui.AboveBelowSplitAxisPanelUI

createUI(JComponent) - Static method in class org.catacomb.graph.gui.AboveBelowSplitPanelUI

createUI(JComponent) - Static method in class org.catacomb.graph.gui.LeftRightSplitPanelUI

Crosshairs - Class in org.catacomb.dataview.build

Crosshairs() - Constructor for class org.catacomb.dataview.build.Crosshairs

crossProduct(Vector, Vector) - Static method in class org.textensor.stochdiff.geom.Geom

crStore - Variable in class org.catacomb.druid.swing.dnd.RegionBoard

crudeExpOf(double) - Method in class org.catacomb.numeric.math.Matrix

crudeExpOf(double) - Method in class org.textensor.stochdiff.numeric.math.Matrix

csdController - Static variable in class org.catacomb.druid.dialog.Dialoguer

csel - Variable in class org.catacomb.druid.swing.CheckListCellRenderer

csel - Variable in class org.catacomb.druid.swing.DListColorRenderer

csel - Variable in class org.catacomb.druid.swing.DListProgressRenderer

csel - Variable in class org.catacomb.druid.swing.DListQuantityRenderer

csel - Variable in class org.catacomb.graph.gui.IconButton

csel - Static variable in class org.catacomb.graph.gui.IconRadioButton

ctgt - Variable in class org.textensor.stochdiff.reduce.Reducer

ctMax - Variable in class org.catacomb.graph.gui.Painter

ctMin - Variable in class org.catacomb.graph.gui.Painter

ctop - Variable in class org.catacomb.graph.gui.AboveBelowSplitPanel

ctxt - Variable in class org.catacomb.dataview.read.CustomJarContentReader

ctxt - Variable in class org.catacomb.serial.OmElementizer

CuboidVolumeElement - Class in org.textensor.stochdiff.numeric.morph

CuboidVolumeElement() - Constructor for class org.textensor.stochdiff.numeric.morph.CuboidVolumeElement

cur_accum - Variable in class org.catacomb.movie.gif.LZWEncoder

cur_bits - Variable in class org.catacomb.movie.gif.LZWEncoder

curPixel - Variable in class org.catacomb.movie.gif.LZWEncoder

CURRENT - Static variable in class org.catacomb.druid.swing.BorderUtil

current - Variable in class org.catacomb.numeric.difnet.calc.NetMapLink

current - Variable in class org.catacomb.numeric.difnet.model.BasicStateNode

currentAddress - Variable in class org.catacomb.druid.gui.base.DruLinkHandler

currentColor - Variable in class org.catacomb.druid.gui.edit.DruColorChoice

currentFrame - Variable in class org.catacomb.dataview.DataPlotPainter

currentPackage - Variable in class org.catacomb.serial.SerializationContext

curvedElements() - Method in class org.textensor.stochdiff.model.Discretization

CurvedVolumeElement - Class in org.textensor.stochdiff.numeric.morph

CurvedVolumeElement() - Constructor for class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

CurvedVolumeSlice - Class in org.textensor.stochdiff.disc

CurvedVolumeSlice(double, double, double) - Constructor for class org.textensor.stochdiff.disc.CurvedVolumeSlice

curveInterps() - Method in class org.catacomb.graph.drawing.Shape

curviness - Variable in class org.catacomb.graph.drawing.GenericShape

curviness - Variable in class org.catacomb.graph.drawing.Shape

CustomJar - Class in org.catacomb.serial.jar

CustomJar() - Constructor for class org.catacomb.serial.jar.CustomJar

CustomJarContentReader - Class in org.catacomb.dataview.read

CustomJarContentReader(byte[], FUImportContext) - Constructor for class org.catacomb.dataview.read.CustomJarContentReader

CustomJarContentType - Class in org.catacomb.dataview.read

CustomJarContentType() - Constructor for class org.catacomb.dataview.read.CustomJarContentType

customJarReader - Variable in class org.catacomb.dataview.read.CustomJarContentReader

CustomJarReader - Class in org.catacomb.dataview.read

CustomJarReader(byte[], JarImportContext) - Constructor for class org.catacomb.dataview.read.CustomJarReader

customJarReader - Variable in class org.catacomb.dataview.read.JarImportContext

CustomJarWriter - Class in org.catacomb.serial.jar

CustomJarWriter() - Constructor for class org.catacomb.serial.jar.CustomJarWriter

CustomJarWriter(HashMap<String, Object>) - Constructor for class org.catacomb.serial.jar.CustomJarWriter

cutName() - Method in class org.catacomb.druid.manifest.DecFile

cval - Variable in class org.catacomb.interlish.content.ColorValue

cvalue - Variable in class org.catacomb.util.ColorDef

cx - Variable in class org.textensor.stochdiff.numeric.morph.VolumeElement

cx - Variable in class org.textensor.vis.VolElt

cy - Variable in class org.textensor.stochdiff.numeric.morph.VolumeElement

cy - Variable in class org.textensor.vis.VolElt

CYAN - Static variable in class org.catacomb.numeric.phys.Phys

cz - Variable in class org.textensor.stochdiff.numeric.morph.VolumeElement

cz - Variable in class org.textensor.vis.VolElt

D

darker(Color) - Static method in class org.catacomb.util.ColorUtil

DARKGRAY - Static variable in class org.catacomb.numeric.phys.Phys

DARKORANGE - Static variable in class org.catacomb.numeric.phys.Phys

DARKYELLOW - Static variable in class org.catacomb.numeric.phys.Phys

DashedLine - Class in org.catacomb.druid.blocks

DashedLine() - Constructor for class org.catacomb.druid.blocks.DashedLine

dashedStroke - Variable in class org.catacomb.graph.gui.Painter

DASSIE_TEXT - Static variable in class org.catacomb.xdoc.HTMLPage

dat - Variable in class org.catacomb.numeric.data.DVector

dat - Variable in class org.textensor.stochdiff.numeric.math.Column

data - Variable in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

data - Variable in class org.catacomb.dataview.formats.MeshDataReader

data - Variable in class org.catacomb.dataview.formats.TableDataHandler

data - Variable in class org.catacomb.dataview.formats.TableDataReader

data - Variable in class org.catacomb.numeric.data.AnimSlice

data - Variable in class org.catacomb.numeric.data.DDSlice

data - Variable in class org.catacomb.numeric.data.DDSubSlice

data - Variable in class org.catacomb.numeric.data.DoubleArray

data - Variable in class org.catacomb.numeric.data.DSlice

dataBackground - Variable in class org.catacomb.interlish.content.ColorSet

DataBoard - Class in org.catacomb.druid.xtext.canvas

DataBoard(DTextCanvas) - Constructor for class org.catacomb.druid.xtext.canvas.DataBoard

dataComplete(Object) - Method in interface org.catacomb.interlish.structure.DataWatcher

dataDisplay - Variable in class org.catacomb.dataview.gui.BasicPlotController

dataDisplay - Variable in class org.catacomb.dataview.gui.DViewPlotController

dataDisplay - Variable in class org.catacomb.dataview.gui.Mesh2plusTimeController

DataDisplay - Class in org.catacomb.druid.blocks

DataDisplay() - Constructor for class org.catacomb.druid.blocks.DataDisplay

dataDisplay - Variable in class org.catacomb.druid.gui.base.DruDataDisplay

DataDisplay - Class in org.catacomb.graph.gui

DataDisplay(int, int) - Constructor for class org.catacomb.graph.gui.DataDisplay

dataExtractor - Variable in class org.catacomb.dataview.DataPlotPainter

dataExtractor - Variable in class org.catacomb.dataview.DataviewController

dataExtractor - Variable in class org.catacomb.dataview.FrameController

DataExtractor - Class in org.catacomb.numeric.data

DataExtractor() - Constructor for class org.catacomb.numeric.data.DataExtractor

dataForeground - Variable in class org.catacomb.interlish.content.ColorSet

DataHandler - Interface in org.catacomb.dataview.formats

dataHandler - Variable in class org.catacomb.dataview.gui.CCVizController

dataHandler - Variable in class org.catacomb.dataview.gui.DViewController

dataHandler - Variable in class org.catacomb.dataview.gui.DViewPlotController

dataHandler - Variable in class org.catacomb.dataview.gui.Mesh2plusTimeController

DataHandlerFactory - Class in org.catacomb.dataview.formats

DataHandlerFactory() - Constructor for class org.catacomb.dataview.formats.DataHandlerFactory

DataIO - Class in org.catacomb.serial

DataIO() - Constructor for class org.catacomb.serial.DataIO

DataItem - Class in org.catacomb.numeric.data

DataItem(String) - Constructor for class org.catacomb.numeric.data.DataItem

dataModel - Variable in class org.catacomb.druid.blocks.AssemblyPanel

DataPlot - Class in org.catacomb.dataview.build

DataPlot() - Constructor for class org.catacomb.dataview.build.DataPlot

DataPlotPainter - Class in org.catacomb.dataview

DataPlotPainter(ArrayList<Displayable>) - Constructor for class org.catacomb.dataview.DataPlotPainter

DataReader - Interface in org.catacomb.dataview.formats

DataSet - Interface in org.catacomb.interlish.structure

DataSetArray - Class in org.catacomb.numeric.data

DataSetArray() - Constructor for class org.catacomb.numeric.data.DataSetArray

DataSetArray(String) - Constructor for class org.catacomb.numeric.data.DataSetArray

DataSetArray(String, NumDataSet[]) - Constructor for class org.catacomb.numeric.data.DataSetArray

DataSetSource - Interface in org.catacomb.interlish.structure

DataSlice - Class in org.catacomb.numeric.data

DataSlice(String) - Constructor for class org.catacomb.numeric.data.DataSlice

DataSource - Class in org.catacomb.dataview.build

DataSource() - Constructor for class org.catacomb.dataview.build.DataSource

dataSource - Variable in class org.catacomb.dataview.build.Dataview

dataStructureChanged(Object, Object) - Method in interface org.catacomb.interlish.structure.DataWatcher

DataTable - Class in org.catacomb.numeric.data

DataTable() - Constructor for class org.catacomb.numeric.data.DataTable

dataValueChanged(Object, Object) - Method in interface org.catacomb.interlish.structure.DataWatcher

Dataview - Class in org.catacomb.dataview.build

Dataview() - Constructor for class org.catacomb.dataview.build.Dataview

dataview - Variable in class org.catacomb.dataview.DataviewController

DataView - Class in org.catacomb.graph.gui

DataView() - Constructor for class org.catacomb.graph.gui.DataView

DataView(String) - Constructor for class org.catacomb.graph.gui.DataView

DataviewController - Class in org.catacomb.dataview

DataviewController(Dataview) - Constructor for class org.catacomb.dataview.DataviewController

dataviewController - Variable in class org.catacomb.dataview.FrameController

DataViewer - Class in org.catacomb.dataview

DataViewer(File) - Constructor for class org.catacomb.dataview.DataViewer

DataViewStore - Class in org.catacomb.graph.gui

DataViewStore() - Constructor for class org.catacomb.graph.gui.DataViewStore

DataWatcher - Interface in org.catacomb.interlish.structure

dataWatchers - Variable in class org.catacomb.numeric.data.NumDataStore

DataWriter - Interface in org.catacomb.numeric.run

date - Variable in class org.catacomb.interlish.version.BuildInfo

datsrc - Variable in class org.catacomb.dataview.DataviewController

dayTimestamp() - Static method in class org.catacomb.util.Timestamp

DBaseButton - Class in org.catacomb.druid.swing

DBaseButton() - Constructor for class org.catacomb.druid.swing.DBaseButton

DBIG - Variable in class org.catacomb.graph.gui.WorldTransform

dble - Variable in class org.catacomb.interlish.content.DoubleValue

dblExtendDArray(double[]) - Static method in class org.catacomb.datalish.array.Array

dblExtendDDArray(double[][]) - Static method in class org.catacomb.datalish.array.Array

dblExtendIArray(int[]) - Static method in class org.catacomb.datalish.array.Array

dblExtendIIArray(int[][]) - Static method in class org.catacomb.datalish.array.Array

dbmSolve(int, int, int, int[], double[][][]) - Static method in class org.catacomb.numeric.math.DiagonalBlockMatrix

dbmTest() - Static method in class org.catacomb.numeric.math.DiagonalBlockMatrix

DBorderLayout - Class in org.catacomb.druid.swing

DBorderLayout() - Constructor for class org.catacomb.druid.swing.DBorderLayout

dBoxPanel - Variable in class org.catacomb.druid.gui.base.DruBoxPanel

DBoxPanel - Class in org.catacomb.druid.swing

DBoxPanel(int) - Constructor for class org.catacomb.druid.swing.DBoxPanel

dButton - Variable in class org.catacomb.druid.gui.edit.DruColorChoice

DButton - Class in org.catacomb.druid.swing

DButton(String) - Constructor for class org.catacomb.druid.swing.DButton

dButtonGroup - Variable in class org.catacomb.druid.gui.base.DruButtonGroup

DButtonGroup - Class in org.catacomb.druid.swing

DButtonGroup() - Constructor for class org.catacomb.druid.swing.DButtonGroup

dCardPanel - Variable in class org.catacomb.druid.gui.base.DruCardPanel

DCardPanel - Class in org.catacomb.druid.swing

DCardPanel() - Constructor for class org.catacomb.druid.swing.DCardPanel

dce(ComponentEvent) - Method in class org.catacomb.druid.swing.DFrame

dCheckbox - Variable in class org.catacomb.druid.gui.edit.DruCheckbox

DCheckbox - Class in org.catacomb.druid.swing

DCheckbox(String) - Constructor for class org.catacomb.druid.swing.DCheckbox

DCheckbox(String, String) - Constructor for class org.catacomb.druid.swing.DCheckbox

DCheckboxList - Class in org.catacomb.druid.swing

DCheckboxList() - Constructor for class org.catacomb.druid.swing.DCheckboxList

DCheckboxMenuItem - Class in org.catacomb.druid.swing

DCheckboxMenuItem(String) - Constructor for class org.catacomb.druid.swing.DCheckboxMenuItem

DCheckboxMenuItem(String, DPopLabel) - Constructor for class org.catacomb.druid.swing.DCheckboxMenuItem

DCheckboxMenuItem(String, DPopLabel, boolean) - Constructor for class org.catacomb.druid.swing.DCheckboxMenuItem

DCheckboxTree - Class in org.catacomb.druid.swing

DCheckboxTree() - Constructor for class org.catacomb.druid.swing.DCheckboxTree

dChoice - Variable in class org.catacomb.druid.gui.edit.DruChoice

DChoice - Class in org.catacomb.druid.swing

DChoice(String[], String[]) - Constructor for class org.catacomb.druid.swing.DChoice

DColorChooser - Class in org.catacomb.druid.swing

DColorChooser() - Constructor for class org.catacomb.druid.swing.DColorChooser

DComboBox - Class in org.catacomb.druid.swing

DComboBox(String[]) - Constructor for class org.catacomb.druid.swing.DComboBox

DComboBoxUI - Class in org.catacomb.druid.swing

DComboBoxUI() - Constructor for class org.catacomb.druid.swing.DComboBoxUI

DComponent - Interface in org.catacomb.interlish.interact

dDialog - Variable in class org.catacomb.druid.gui.base.DruDialog

DDialog - Class in org.catacomb.druid.swing

DDialog() - Constructor for class org.catacomb.druid.swing.DDialog

DDialog(DFrame, String) - Constructor for class org.catacomb.druid.swing.DDialog

DdndTransferable - Class in org.catacomb.druid.swing.dnd

DdndTransferable(TreePath) - Constructor for class org.catacomb.druid.swing.dnd.DdndTransferable

DDotsPanel - Class in org.catacomb.druid.swing

DDotsPanel() - Constructor for class org.catacomb.druid.swing.DDotsPanel

ddp - Variable in class org.catacomb.druid.gui.base.DruDotsPanel

DDropCanvas - Class in org.catacomb.druid.swing

DDropCanvas() - Constructor for class org.catacomb.druid.swing.DDropCanvas

DDropTextField - Class in org.catacomb.druid.swing

DDropTextField(String, int) - Constructor for class org.catacomb.druid.swing.DDropTextField

DDSlice - Class in org.catacomb.numeric.data

DDSlice(BlockStack, String, Field, String, String, String[]) - Constructor for class org.catacomb.numeric.data.DDSlice

DDSubSlice - Class in org.catacomb.numeric.data

DDSubSlice(DDSlice, int, String) - Constructor for class org.catacomb.numeric.data.DDSubSlice

ddtField - Variable in class org.catacomb.druid.swing.dnd.TextFieldDropTarget

deactivate() - Method in class org.catacomb.graph.gui.MouseHandler

dead - Variable in class org.catacomb.numeric.difnet.CellPoint

dead - Variable in class org.textensor.stochdiff.numeric.morph.TreePoint

deBinarize(byte[]) - Static method in class org.catacomb.dataview.read.NumericDataRW

deBinarize(byte[]) - Method in interface org.catacomb.interlish.structure.Binariable

Debug - Class in org.textensor.report

Debug() - Constructor for class org.textensor.report.Debug

debugError(String) - Static method in class org.catacomb.report.E

debugError(String) - Static method in class org.textensor.report.E

DecFile - Class in org.catacomb.druid.manifest

DecFile() - Constructor for class org.catacomb.druid.manifest.DecFile

DecFile(String, String) - Constructor for class org.catacomb.druid.manifest.DecFile

DecFile(File, File) - Constructor for class org.catacomb.druid.manifest.DecFile

DecFile(String) - Constructor for class org.catacomb.druid.manifest.DecFile

DecManifest - Class in org.catacomb.druid.manifest

DecManifest() - Constructor for class org.catacomb.druid.manifest.DecManifest

DecManifest(File, String) - Constructor for class org.catacomb.druid.manifest.DecManifest

decode(String) - Static method in class org.catacomb.util.Base64

Returns the plaintext equivalent of a base 64-encoded string.

decrementBy(Column) - Method in class org.textensor.stochdiff.numeric.math.Column

decTransformGroup - Variable in class org.textensor.vis.SceneGraphViewer

DEditorPane - Class in org.catacomb.druid.swing

DEditorPane() - Constructor for class org.catacomb.druid.swing.DEditorPane

DEF_CURSOR - Static variable in class org.catacomb.druid.swing.split.DSplitterBar

defaultAppearance - Variable in class org.textensor.vis.SceneGraphBuilder

defaultApplicationName - Static variable in class org.catacomb.druid.load.DruidAppBase

defaultCircle() - Static method in class org.catacomb.graph.drawing.Circle

defaultColor - Static variable in class org.catacomb.graph.gui.DisplayStyleSet

defaultConcs - Variable in class org.textensor.stochdiff.model.InitialConditions

DefaultConstructor - Class in org.catacomb.act

DefaultConstructor() - Constructor for class org.catacomb.act.DefaultConstructor

DefaultConstructor(String) - Constructor for class org.catacomb.act.DefaultConstructor

defaultDelta - Variable in class org.textensor.stochdiff.disc.Resolution

defaultFilter - Variable in class org.catacomb.druid.swing.DFileChooser

defaultFont - Variable in class org.catacomb.druid.xtext.canvas.FontStore

defaultGuise - Static variable in class org.catacomb.druid.xtext.StandardGuises

defaultItalicFont - Variable in class org.catacomb.druid.xtext.canvas.FontStore

defaultMaxElementSide - Variable in class org.textensor.stochdiff.model.Discretization

defaultRootVisibility - Variable in class org.catacomb.druid.gui.edit.DruTreePanel

defaultSquare() - Static method in class org.catacomb.graph.drawing.Square

defaultStyleSheet - Static variable in class org.catacomb.druid.swing.DHTMLPane

defines(String) - Method in class org.catacomb.util.StandardColors

deGarbage(String) - Static method in class org.catacomb.serial.xml.XMLChecker

deGarbage(String) - Static method in class org.textensor.xml.XMLChecker

delay - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

delay() - Static method in class org.catacomb.report.E

delay() - Static method in class org.textensor.report.E

delegate - Variable in class org.catacomb.druid.swing.CheckTreeRenderer

deletBackwards() - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

DELETE - Static variable in class org.catacomb.graph.arbor.SegmentGraphVE

deleteCharBefore(int) - Method in class org.catacomb.druid.xtext.base.TextBlock

deleted - Variable in class org.catacomb.util.Diff.change

# lines of file 0 changed here.

deleteDArrayElt(double[], int) - Static method in class org.catacomb.datalish.array.Array

deleteDDArrayElt(double[][], int) - Static method in class org.catacomb.datalish.array.Array

deleteDir(File) - Static method in class org.catacomb.util.FileUtil

deleteIArrayElt(int[], int) - Static method in class org.catacomb.datalish.array.Array

deleteIIArrayElt(int[][], int) - Static method in class org.catacomb.datalish.array.Array

deletePoint(ShapePoint) - Method in class org.catacomb.graph.drawing.Shape

deletePoint(int) - Method in class org.catacomb.graph.drawing.Shape

deletes - Variable in class org.catacomb.util.DiffPrint.Base

deliverAction(boolean) - Method in class org.catacomb.druid.swing.DBaseButton

deliverAction(String, boolean) - Method in class org.catacomb.druid.swing.DCheckbox

deliverAction(String, boolean) - Method in class org.catacomb.druid.swing.DChoice

deliverAction(String, boolean) - Method in class org.catacomb.druid.swing.DComboBox

deliverAction(String, boolean) - Method in class org.catacomb.druid.swing.DRadioButtons

deliverAction(String, boolean) - Method in class org.catacomb.druid.swing.DValueHistory

deliverLabelAction(String, boolean) - Method in class org.catacomb.druid.swing.DPopLabel

deliverLabelAction(String, boolean) - Method in class org.catacomb.druid.swing.DRadioButton

deltaHM - Variable in class org.textensor.stochdiff.disc.Resolution

deltaLights(double) - Method in class org.textensor.vis.Icing3DViewer

deltaLights(double) - Method in class org.textensor.vis.SceneGraphViewer

deltaLights(double) - Method in interface org.textensor.vis.Visualizer

deltalnp - Static variable in class org.textensor.stochdiff.numeric.stochastic.InterpolatingStepGenerator

deltaT - Variable in class org.catacomb.be.BasicTimestep

deltaZ - Variable in class org.textensor.stochdiff.numeric.morph.VolumeElement

Demo1 - Class in org.catacomb.graph.gui

Demo1() - Constructor for class org.catacomb.graph.gui.Demo1

DemoNode - Class in org.catacomb.druid.util.examples

DemoNode(Object) - Constructor for class org.catacomb.druid.util.examples.DemoNode

DemoNode(Object, String) - Constructor for class org.catacomb.druid.util.examples.DemoNode

DemoNode(String, int) - Constructor for class org.catacomb.druid.util.examples.DemoNode

density - Variable in class org.textensor.stochdiff.numeric.morph.SpinePopulation

dePause() - Method in class org.catacomb.dataview.FrameController

dePause() - Method in class org.catacomb.dataview.gui.FramePlayerController

dePause() - Method in class org.catacomb.graph.gui.MovieDisplay

DependencyInstaller - Interface in org.catacomb.interlish.structure

Dependent - Interface in org.catacomb.interlish.structure

dependentDivider - Variable in class org.catacomb.graph.gui.AboveBelowSplitPanel

depends - Variable in class org.catacomb.druid.blocks.CheckboxMenuItem

depends - Variable in class org.catacomb.druid.blocks.MenuItem

deprecate(String) - Static method in class org.catacomb.report.E

deprecate() - Static method in class org.catacomb.report.E

deprecate(String) - Static method in class org.textensor.report.E

deprecate() - Static method in class org.textensor.report.E

DEPRECATED - Static variable in class org.catacomb.report.E

deProject(double, double, double) - Method in class org.catacomb.graph.gui.WorldTransform

depth - Variable in class org.textensor.stochdiff.disc.LineBoxer

depth - Variable in class org.textensor.stochdiff.numeric.morph.VolumeLine

depth2D - Variable in class org.textensor.stochdiff.model.SDRun

DeReferencable - Interface in org.catacomb.be

deReference() - Method in interface org.catacomb.be.DeReferencable

deReference() - Method in class org.catacomb.datalish.SColor

deReference() - Method in class org.catacomb.graph.arbor.SegmentGraph

deReference() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

deReference() - Method in class org.catacomb.graph.drawing.Shape

Describable - Interface in org.catacomb.interlish.structure

Described - Interface in org.catacomb.interlish.structure

Describer - Interface in org.catacomb.interlish.structure

description - Variable in class org.catacomb.druid.swing.ExtFileFilter

descriptionText - Variable in class org.catacomb.druid.swing.DSlider

deselect() - Method in interface org.catacomb.druid.build.GroupContingent

deselect() - Method in class org.catacomb.druid.gui.edit.DruToggleButton

deselectOthers(GroupContingent) - Method in class org.catacomb.druid.build.ContingencyGroup

deserialize(String) - Static method in class org.catacomb.serial.Deserializer

deserialize(String, ProgressReport) - Static method in class org.catacomb.serial.Deserializer

deserialize(String, ImportContext) - Static method in class org.catacomb.serial.Deserializer

deserialize(String, ImportContext, ProgressReport) - Static method in class org.catacomb.serial.Deserializer

deserialize(Element) - Static method in class org.catacomb.serial.Deserializer

deserialize(String) - Static method in class org.catacomb.serial.ElementXMLReader

deserialize(String) - Static method in class org.catacomb.serial.ReflectionXMLReader

deserialize(String) - Static method in class org.catacomb.util.ColorUtil

Deserializer - Class in org.catacomb.serial

Deserializer() - Constructor for class org.catacomb.serial.Deserializer

destCache - Static variable in class org.catacomb.interlish.reflect.Narrower

destCache - Static variable in class org.textensor.xml.Narrower

destination(double) - Method in class org.catacomb.be.Direction

deSuggest() - Method in class org.catacomb.druid.gui.edit.DruButton

deSuggest() - Method in class org.catacomb.druid.swing.DBaseButton

deSuggest() - Method in class org.catacomb.druid.swing.DButton

deSuggest() - Method in class org.catacomb.druid.swing.DToggleButton

desx - Variable in class org.catacomb.druid.swing.DFrame

desy - Variable in class org.catacomb.druid.swing.DFrame

det() - Method in class org.catacomb.numeric.math.Matrix

det() - Method in class org.textensor.stochdiff.numeric.math.Matrix

detach() - Method in class org.catacomb.graph.gui.Mouse

DeterministicGridCalc - Class in org.textensor.stochdiff.numeric.grid

DeterministicGridCalc(SDRun) - Constructor for class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

DeterministicPoolCalc - Class in org.textensor.stochdiff.numeric.pool

DeterministicPoolCalc(SDRun) - Constructor for class org.textensor.stochdiff.numeric.pool.DeterministicPoolCalc

DetTest - Class in org.textensor.stochdiff.examples.NOEPAC

DetTest() - Constructor for class org.textensor.stochdiff.examples.NOEPAC.DetTest

DFileChooser - Class in org.catacomb.druid.swing

DFileChooser() - Constructor for class org.catacomb.druid.swing.DFileChooser

dFileChooser - Variable in class org.catacomb.druid.util.FileChooser

dFillGuage - Variable in class org.catacomb.druid.gui.edit.DruFillGuage

DFillGuage - Class in org.catacomb.druid.swing

DFillGuage() - Constructor for class org.catacomb.druid.swing.DFillGuage

dFloat - Variable in class org.catacomb.druid.gui.edit.DruFloat

DFloat - Class in org.catacomb.druid.swing

DFloat(double, double, double, String) - Constructor for class org.catacomb.druid.swing.DFloat

dFloat - Variable in class org.catacomb.druid.swing.DFloatSlider

dFloatSlider - Variable in class org.catacomb.druid.swing.DFloat

DFloatSlider - Class in org.catacomb.druid.swing

DFloatSlider(DFloat, double, double, double, int) - Constructor for class org.catacomb.druid.swing.DFloatSlider

dFormPanel - Variable in class org.catacomb.druid.gui.base.DruFormPanel

DFormPanel - Class in org.catacomb.druid.swing

DFormPanel() - Constructor for class org.catacomb.druid.swing.DFormPanel

dFrame - Variable in class org.catacomb.druid.gui.base.DruFrame

DFrame - Class in org.catacomb.druid.swing

DFrame() - Constructor for class org.catacomb.druid.swing.DFrame

DFrame(String) - Constructor for class org.catacomb.druid.swing.DFrame

dgx - Variable in class org.catacomb.numeric.difnet.CellPoint

dgx - Variable in class org.textensor.stochdiff.numeric.morph.TreePoint

dgy - Variable in class org.catacomb.numeric.difnet.CellPoint

dgy - Variable in class org.textensor.stochdiff.numeric.morph.TreePoint

DHRPanel - Class in org.catacomb.druid.swing

DHRPanel(int) - Constructor for class org.catacomb.druid.swing.DHRPanel

dHTMLPane - Variable in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

dHTMLPane - Variable in class org.catacomb.druid.gui.edit.DruHTMLPanel

DHTMLPane - Class in org.catacomb.druid.swing

DHTMLPane() - Constructor for class org.catacomb.druid.swing.DHTMLPane

diag - Variable in class org.catacomb.numeric.difnet.calc.NetMapNode

diag(int, int, double[][], int) - Static method in class org.catacomb.numeric.math.DiagonalBlockMatrix

diag(int, int, int, int) - Method in class org.catacomb.util.Diff

Find the midpoint of the shortest edit script for a specified portion of the two files.

DiagonalBlockMatrix - Class in org.catacomb.numeric.math

DiagonalBlockMatrix() - Constructor for class org.catacomb.numeric.math.DiagonalBlockMatrix

Dialog - Class in org.catacomb.druid.blocks

Dialog() - Constructor for class org.catacomb.druid.blocks.Dialog

Dialog - Interface in org.catacomb.interlish.structure

DialogController - Class in org.catacomb.druid.dialog

DialogController() - Constructor for class org.catacomb.druid.dialog.DialogController

dialogs - Variable in class org.catacomb.druid.blocks.Application

dialogs - Variable in class org.catacomb.druid.blocks.AutonomousPanel

dialogs - Variable in class org.catacomb.druid.blocks.EditorWindow

Dialoguer - Class in org.catacomb.druid.dialog

Dialoguer() - Constructor for class org.catacomb.druid.dialog.Dialoguer

diameter - Variable in class org.textensor.stochdiff.neuroml.MorphMLPoint

DIAMOND - Static variable in class org.catacomb.graph.drawing.ShapeSymmetry

Diff - Class in org.catacomb.util

A class to compare vectors of objects.

Diff(Object[], Object[]) - Constructor for class org.catacomb.util.Diff

Prepare to find differences between two arrays.

diff(Diff.ScriptBuilder) - Method in class org.catacomb.util.Diff

Get the results of comparison as an edit script.

diff(Object, Object) - Static method in class org.catacomb.util.ObjectUtil

Diff.change - Class in org.catacomb.util

The result of comparison is an "edit script": a chain of change objects.

Diff.change(int, int, int, int, Diff.change) - Constructor for class org.catacomb.util.Diff.change

Cons an additional entry onto the front of an edit script OLD.

Diff.file_data - Class in org.catacomb.util

Data on one input file being compared.

Diff.file_data(Object[], Hashtable<Object, Integer>) - Constructor for class org.catacomb.util.Diff.file_data

Diff.ForwardScript - Class in org.catacomb.util

Diff.ForwardScript() - Constructor for class org.catacomb.util.Diff.ForwardScript

Diff.ReverseScript - Class in org.catacomb.util

Scan the tables of which lines are inserted and deleted, producing an edit script in reverse order.

Diff.ReverseScript() - Constructor for class org.catacomb.util.Diff.ReverseScript

Diff.ScriptBuilder - Interface in org.catacomb.util

diff_2(boolean) - Method in class org.catacomb.util.Diff

differ(Object, Object) - Static method in class org.catacomb.interlish.lang.U

differentFrom(Box, double) - Method in class org.catacomb.datalish.Box

DiffPrint - Class in org.catacomb.util

A simple framework for printing change lists produced by Diff.

DiffPrint() - Constructor for class org.catacomb.util.DiffPrint

DiffPrint.Base - Class in org.catacomb.util

A Base class for printing edit scripts produced by Diff.

DiffPrint.Base(Object[], Object[]) - Constructor for class org.catacomb.util.DiffPrint.Base

DiffPrint.ContextPrint - Class in org.catacomb.util

Prints an edit script in context diff format.

DiffPrint.ContextPrint(Object[], Object[]) - Constructor for class org.catacomb.util.DiffPrint.ContextPrint

DiffPrint.EdPrint - Class in org.catacomb.util

Prints an edit script in a format suitable for input to ed.

DiffPrint.EdPrint(Object[], Object[]) - Constructor for class org.catacomb.util.DiffPrint.EdPrint

DiffPrint.NormalPrint - Class in org.catacomb.util

Print a change list in the standard diff format.

DiffPrint.NormalPrint(Object[], Object[]) - Constructor for class org.catacomb.util.DiffPrint.NormalPrint

DiffPrint.UnifiedPrint - Class in org.catacomb.util

Prints an edit script in context diff format.

DiffPrint.UnifiedPrint(Object[], Object[]) - Constructor for class org.catacomb.util.DiffPrint.UnifiedPrint

DiffStrings - Class in org.catacomb.util

DiffStrings() - Constructor for class org.catacomb.util.DiffStrings

DiffusibleQuantity - Interface in org.catacomb.numeric.difnet

DiffusionCalculator - Interface in org.catacomb.numeric.difnet

diffusion on full or a-cyclic networks.

diffusionConstants - Variable in class org.textensor.stochdiff.numeric.chem.ReactionTable

diffusionConstants - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

diffusionConstants - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

DifMesh - Class in org.catacomb.numeric.mesh

DifMesh() - Constructor for class org.catacomb.numeric.mesh.DifMesh

DifMeshBuilder - Class in org.catacomb.numeric.mesh

DifMeshBuilder() - Constructor for class org.catacomb.numeric.mesh.DifMeshBuilder

DifMeshPoint - Class in org.catacomb.numeric.mesh

DifMeshPoint() - Constructor for class org.catacomb.numeric.mesh.DifMeshPoint

DifMeshPoint(double, double, double, double, int) - Constructor for class org.catacomb.numeric.mesh.DifMeshPoint

digestRows() - Method in class org.catacomb.numeric.data.VectorSet

dim - Variable in class org.catacomb.icon.splash.SplashWindow

dim() - Method in class org.catacomb.numeric.math.Matrix

dim() - Method in class org.textensor.stochdiff.numeric.math.Matrix

DImageButton - Class in org.catacomb.druid.swing

DImageButton(String, String) - Constructor for class org.catacomb.druid.swing.DImageButton

DImageIcon - Class in org.catacomb.icon

DImageIcon(URL) - Constructor for class org.catacomb.icon.DImageIcon

DInfoArea - Class in org.catacomb.druid.swing

DInfoArea(String, String) - Constructor for class org.catacomb.druid.swing.DInfoArea

dInt - Variable in class org.catacomb.druid.gui.edit.DruInt

DInt - Class in org.catacomb.druid.swing

DInt(int, int, int, String) - Constructor for class org.catacomb.druid.swing.DInt

Direction - Class in org.catacomb.be

Direction(Direction) - Constructor for class org.catacomb.be.Direction

Direction(double, double) - Constructor for class org.catacomb.be.Direction

direction - Variable in class org.catacomb.be.Placement

directionalLight - Variable in class org.textensor.vis.SceneGraphViewer

directionMatches(Socket) - Method in interface org.catacomb.interlish.structure.Plug

directory - Variable in class org.catacomb.druid.manifest.DecFile

dirName - Variable in class org.catacomb.util.DirRef

DirRef - Class in org.catacomb.util

DirRef(String) - Constructor for class org.catacomb.util.DirRef

dirs - Variable in class org.catacomb.util.DirRef

disable() - Method in interface org.catacomb.druid.build.GroupContingent

disable() - Method in class org.catacomb.druid.gui.edit.DruButton

disableRelaying() - Method in class org.catacomb.druid.gui.edit.DruGCPanel

Disc - Class in org.catacomb.dataview.build

Disc() - Constructor for class org.catacomb.dataview.build.Disc

Disc - Class in org.catacomb.graph.drawing

Disc() - Constructor for class org.catacomb.graph.drawing.Disc

discard(byte[]) - Method in class org.catacomb.util.Diff.file_data

Actually discard the lines.

discard_confusing_lines() - Method in class org.catacomb.util.Diff

Discard lines from one file that have no matches in the other file.

discard_confusing_lines(Diff.file_data) - Method in class org.catacomb.util.Diff.file_data

Discard lines that have no matches in another file.

discardable(int[]) - Method in class org.catacomb.util.Diff.file_data

Mark to be discarded each line that matches no line of another file.

DiscBoxer - Class in org.textensor.stochdiff.disc

DiscBoxer(TreePoint[], double[]) - Constructor for class org.textensor.stochdiff.disc.DiscBoxer

discFill(Position, Position, String, String, double[], double) - Method in class org.textensor.stochdiff.disc.CurvedVolumeSlice

discFill(Position, Position, String, String) - Method in class org.textensor.stochdiff.numeric.morph.VolumeSlice

disconnect() - Method in interface org.catacomb.interlish.structure.Plug

disconnect() - Method in class org.catacomb.numeric.mesh.DifMeshPoint

disconnect() - Method in interface org.catacomb.numeric.mesh.MeshPoint

DiscretePStepGenerator - Class in org.textensor.stochdiff.numeric.stochastic

DiscretePStepGenerator(BaseCalc.distribution_t) - Constructor for class org.textensor.stochdiff.numeric.stochastic.DiscretePStepGenerator

Discretization - Class in org.textensor.stochdiff.model

Discretization() - Constructor for class org.textensor.stochdiff.model.Discretization

discretization - Variable in class org.textensor.stochdiff.model.SDRun

discretize(MeshPoint[], double, int) - Static method in class org.catacomb.numeric.mesh.Discretizer

divided into segments with equal integral of the square root of the radius, given by disqrtr.

discretize() - Method in class org.textensor.stochdiff.disc.SegmentSlicer

DiscretizedSpine - Class in org.textensor.stochdiff.disc

DiscretizedSpine(double[], double[], String[], String[]) - Constructor for class org.textensor.stochdiff.disc.DiscretizedSpine

Discretizer - Class in org.catacomb.numeric.mesh

Discretizer() - Constructor for class org.catacomb.numeric.mesh.Discretizer

DiscSplitter - Class in org.textensor.stochdiff.disc

DiscSplitter(TreePoint[], double, HashMap<String, Double>, double[], double) - Constructor for class org.textensor.stochdiff.disc.DiscSplitter

display - Variable in class org.catacomb.dataview.build.FrameSelector

Display - Interface in org.catacomb.druid.util

display - Variable in class org.catacomb.interlish.report.Focus

display - Variable in class org.catacomb.interlish.report.Status

Displayable - Class in org.catacomb.dataview.build

Displayable() - Constructor for class org.catacomb.dataview.build.Displayable

Displayable - Class in org.catacomb.dataview.display

Displayable(String, Color) - Constructor for class org.catacomb.dataview.display.Displayable

DisplayablePoint - Class in org.catacomb.dataview.build

DisplayablePoint() - Constructor for class org.catacomb.dataview.build.DisplayablePoint

displayables - Variable in class org.catacomb.dataview.formats.PolyLineHandler

displayFrame() - Method in class org.catacomb.graph.gui.MovieDisplay

displayList - Variable in class org.catacomb.dataview.build.DataPlot

displayPath - Variable in class org.catacomb.dataview.FrameController

displayPath - Variable in class org.catacomb.dataview.gui.FramePlayerController

displays - Variable in class org.catacomb.dataview.DataviewController

DisplayStrokes - Class in org.catacomb.graph.gui

DisplayStrokes(String[], double[]) - Constructor for class org.catacomb.graph.gui.DisplayStrokes

DisplayStylesData - Class in org.catacomb.graph.gui

DisplayStylesData() - Constructor for class org.catacomb.graph.gui.DisplayStylesData

DisplayStyleSet - Class in org.catacomb.graph.gui

DisplayStyleSet() - Constructor for class org.catacomb.graph.gui.DisplayStyleSet

DisplayStyleSet(String) - Constructor for class org.catacomb.graph.gui.DisplayStyleSet

displayValues - Variable in class org.catacomb.dataview.FrameController

displayValues - Variable in class org.catacomb.dataview.gui.FramePlayerController

dispose() - Method in class org.catacomb.druid.gui.base.DruFrame

dispose - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

distal - Variable in class org.textensor.stochdiff.neuroml.segment

distance(double, double, double, double) - Static method in class org.catacomb.geom.Geom

distance2(double, double, double, double) - Static method in class org.catacomb.geom.Geom

distanceBetween(Position, Position) - Static method in class org.catacomb.geom.Geom

distanceBetween(Position, Position) - Static method in class org.catacomb.graph.gui.Geom

distanceBetween(MeshPoint, MeshPoint) - Static method in class org.catacomb.numeric.mesh.Discretizer

distanceBetween(Position, Position) - Static method in class org.textensor.stochdiff.geom.Geom

distanceBetween(double[], double[]) - Static method in class org.textensor.stochdiff.geom.Geom

distanceFrom(Position) - Method in class org.catacomb.be.Position

distanceFromOrigin() - Method in class org.catacomb.be.Position

distanceTo(Position, double[]) - Static method in class org.catacomb.geom.Geom

distanceTo(CellPoint) - Method in class org.catacomb.numeric.difnet.CellPoint

distanceTo(MorphPoint) - Method in class org.textensor.stochdiff.model.MorphPoint

distanceTo(TreePoint) - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

distID - Variable in class org.textensor.stochdiff.numeric.BaseCalc

distribution - Variable in class org.textensor.stochdiff.model.SDRun

distributionID - Variable in class org.textensor.stochdiff.model.SDRun

dItem - Variable in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

dItem - Variable in class org.catacomb.druid.gui.edit.DruMenuItem

dLabel - Variable in class org.catacomb.druid.gui.base.DruImageLabelPanel

dLabel - Variable in class org.catacomb.druid.gui.base.DruLabel

dLabel - Variable in class org.catacomb.druid.gui.base.DruLabelPanel

dLabel - Variable in class org.catacomb.druid.gui.edit.DruChoice

dLabel - Variable in class org.catacomb.druid.gui.edit.DruColorChoice

dLabel - Variable in class org.catacomb.druid.gui.edit.DruLabelledTextField

DLabel - Class in org.catacomb.druid.swing

DLabel(DImageIcon) - Constructor for class org.catacomb.druid.swing.DLabel

DLabel(String, int) - Constructor for class org.catacomb.druid.swing.DLabel

DLabel(String) - Constructor for class org.catacomb.druid.swing.DLabel

dlfp - Variable in class org.catacomb.druid.gui.base.DruBrowserPanel

dList - Variable in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

dList - Variable in class org.catacomb.druid.gui.edit.DruListPanel

dList - Variable in class org.catacomb.druid.gui.edit.DruToggleListPanel

DList - Class in org.catacomb.druid.swing

DList() - Constructor for class org.catacomb.druid.swing.DList

DListCellRenderer - Interface in org.catacomb.druid.swing

DListColorRenderer - Class in org.catacomb.druid.swing

DListColorRenderer() - Constructor for class org.catacomb.druid.swing.DListColorRenderer

DListProgressRenderer - Class in org.catacomb.druid.swing

DListProgressRenderer() - Constructor for class org.catacomb.druid.swing.DListProgressRenderer

DListQuantityRenderer - Class in org.catacomb.druid.swing

DListQuantityRenderer() - Constructor for class org.catacomb.druid.swing.DListQuantityRenderer

dMenu - Variable in class org.catacomb.druid.gui.edit.DruMenu

dMenu - Variable in class org.catacomb.druid.swing.DCheckboxTree

DMenu - Class in org.catacomb.druid.swing

DMenu(String) - Constructor for class org.catacomb.druid.swing.DMenu

dMenu - Variable in class org.catacomb.druid.swing.DTree

dMenuBar - Variable in class org.catacomb.druid.gui.base.DruMenuBar

DMenuBar - Class in org.catacomb.druid.swing

DMenuBar() - Constructor for class org.catacomb.druid.swing.DMenuBar

DMenuItem - Class in org.catacomb.druid.swing

DMenuItem(String) - Constructor for class org.catacomb.druid.swing.DMenuItem

DMenuItem(String, String) - Constructor for class org.catacomb.druid.swing.DMenuItem

dmesh - Variable in class org.catacomb.numeric.mesh.DifMeshBuilder

DMItem - Class in org.catacomb.druid.xtext.base

DMItem() - Constructor for class org.catacomb.druid.xtext.base.DMItem

DMouseRelay - Class in org.catacomb.druid.swing

DMouseRelay(MouseActor) - Constructor for class org.catacomb.druid.swing.DMouseRelay

doc - Variable in class org.catacomb.druid.blocks.Application

DocDisplay - Interface in org.catacomb.druid.xtext.base

docDisplay - Variable in class org.catacomb.druid.xtext.base.DocStore

DocdUtils - Class in org.catacomb.util

DocdUtils() - Constructor for class org.catacomb.util.DocdUtils

docs - Variable in class org.catacomb.druid.xtext.base.DocStore

DocStore - Class in org.catacomb.druid.xtext.base

DocStore() - Constructor for class org.catacomb.druid.xtext.base.DocStore

docStore - Variable in class org.catacomb.druid.xtext.base.XTDoc

docStore - Variable in class org.catacomb.druid.xtext.data.PageDataStore

documentation - Variable in class org.catacomb.druid.gui.base.DruRoot

Documented - Interface in org.catacomb.interlish.structure

DocumentedComponent - Class in org.catacomb.interlish.content

DocumentedComponent() - Constructor for class org.catacomb.interlish.content.DocumentedComponent

DocumentedComponent(String) - Constructor for class org.catacomb.interlish.content.DocumentedComponent

doIndependent() - Method in class org.textensor.stochdiff.numeric.BaseCalc

Domain - Interface in org.catacomb.interlish.structure

doneErr - Variable in class org.catacomb.dataview.build.Displayable

doneIcon - Variable in class org.catacomb.druid.swing.DListProgressRenderer

doneInit - Static variable in class org.catacomb.dataview.DView

doneInit - Variable in class org.catacomb.numeric.data.BlockStack

donePack - Variable in class org.catacomb.druid.gui.base.DruFrame

DONT_CARE - Static variable in class org.catacomb.druid.swing.TristateCheckBox

DONTKNOW - Static variable in interface org.catacomb.interlish.structure.NameFilter

dontReport - Variable in class org.catacomb.druid.swing.DTabbedPane

dontShowAgainBV - Variable in class org.catacomb.druid.dialog.CheckSeenDialogController

doParticle() - Method in class org.textensor.stochdiff.numeric.BaseCalc

doShared() - Method in class org.textensor.stochdiff.numeric.BaseCalc

dotPathify(String) - Static method in class org.catacomb.util.PathUtil

dotProduct(Vector, Vector) - Static method in class org.textensor.stochdiff.geom.Geom

dotsToSlashPath(String) - Static method in class org.catacomb.util.PathUtil

DoubleArray - Class in org.catacomb.numeric.data

DoubleArray() - Constructor for class org.catacomb.numeric.data.DoubleArray

DoubleArray(double[]) - Constructor for class org.catacomb.numeric.data.DoubleArray

doubleValue - Variable in class org.catacomb.druid.gui.edit.DruFloat

DoubleValue - Class in org.catacomb.interlish.content

DoubleValue() - Constructor for class org.catacomb.interlish.content.DoubleValue

DoubleValue(double) - Constructor for class org.catacomb.interlish.content.DoubleValue

DoubleValueEditor - Interface in org.catacomb.interlish.structure

down - Variable in class org.catacomb.graph.gui.Mouse

downBlock - Variable in class org.catacomb.druid.xtext.base.ContainerBlock

DownBlock - Class in org.catacomb.druid.xtext.base

DownBlock(ContainerBlock) - Constructor for class org.catacomb.druid.xtext.base.DownBlock

downButton - Variable in class org.catacomb.druid.gui.edit.DruExpandingTextArea

downLink - Variable in class org.catacomb.numeric.difnet.calc.NetMapNode

downscale - Variable in class org.textensor.vis.SceneGraphViewer

downtime - Variable in class org.catacomb.druid.swing.DFloatSlider

downtime - Variable in class org.catacomb.druid.swing.DSlider

downTransform - Variable in class org.textensor.vis.SceneGraphViewer

dPanel - Variable in class org.catacomb.druid.gui.base.DruPanel

dpanel - Variable in class org.catacomb.druid.gui.edit.DruLabelledTextField

DPanel - Class in org.catacomb.druid.swing

DPanel() - Constructor for class org.catacomb.druid.swing.DPanel

dpcInit() - Method in class org.textensor.stochdiff.numeric.pool.DeterministicPoolCalc

dpcInit() - Method in class org.textensor.stochdiff.numeric.pool.ImplicitEulerPoolCalc

dpdwx - Variable in class org.catacomb.graph.gui.WorldTransform

dpdwx0 - Variable in class org.catacomb.graph.gui.WorldTransform

dpdwy - Variable in class org.catacomb.graph.gui.WorldTransform

dpdwy0 - Variable in class org.catacomb.graph.gui.WorldTransform

dPdX() - Method in class org.catacomb.graph.gui.WorldTransform

dPdY() - Method in class org.catacomb.graph.gui.WorldTransform

DPlainTextEditor - Class in org.catacomb.druid.swing

DPlainTextEditor() - Constructor for class org.catacomb.druid.swing.DPlainTextEditor

DPopLabel - Class in org.catacomb.druid.swing

DPopLabel(String) - Constructor for class org.catacomb.druid.swing.DPopLabel

DPopLabel(String, String) - Constructor for class org.catacomb.druid.swing.DPopLabel

dProgressReport - Variable in class org.catacomb.druid.gui.edit.DruProgressReport

DProgressReport - Class in org.catacomb.druid.swing

DProgressReport() - Constructor for class org.catacomb.druid.swing.DProgressReport

DRadioButton - Class in org.catacomb.druid.swing

DRadioButton(String, String, boolean) - Constructor for class org.catacomb.druid.swing.DRadioButton

DRadioButton(String, boolean, String) - Constructor for class org.catacomb.druid.swing.DRadioButton

dRadioButtons - Variable in class org.catacomb.druid.gui.edit.DruRadioButtons

DRadioButtons - Class in org.catacomb.druid.swing

DRadioButtons(String[], String) - Constructor for class org.catacomb.druid.swing.DRadioButtons

DRAG - Static variable in class org.catacomb.druid.swing.DFloatSlider

DRAG - Static variable in class org.catacomb.druid.swing.dnd.Region

DRAG - Static variable in class org.catacomb.druid.swing.DSlider

DRAG_OR_DROP - Static variable in class org.catacomb.druid.swing.dnd.Region

DragAndDrop - Class in org.catacomb.druid.swing.dnd

DragAndDrop() - Constructor for class org.catacomb.druid.swing.dnd.DragAndDrop

dragAt(Graphics, int, int) - Method in class org.catacomb.druid.swing.dnd.RegionDropTarget

dragBounds - Variable in class org.catacomb.druid.swing.dnd.RegionDropTarget

dragBounds - Variable in class org.catacomb.druid.swing.dnd.TextFieldDropTarget

dragBounds - Variable in class org.catacomb.druid.swing.DTreeDropTarget

dragCorner - Variable in class org.catacomb.druid.swing.DDropCanvas

dragDropEnd(DragSourceDropEvent) - Method in class org.catacomb.druid.swing.dnd.RegionDragSource

dragDropEnd(DragSourceDropEvent) - Method in class org.catacomb.druid.swing.DTreeDragSource

dragee - Static variable in class org.catacomb.druid.swing.split.SplitterLayout

dragEnter(DragSourceDragEvent) - Method in class org.catacomb.druid.swing.dnd.RegionDragSource

dragEnter(DropTargetDragEvent) - Method in class org.catacomb.druid.swing.dnd.RegionDropTarget

dragEnter(DropTargetDragEvent) - Method in class org.catacomb.druid.swing.dnd.TextFieldDropTarget

dragEnter(DragSourceDragEvent) - Method in class org.catacomb.druid.swing.DTreeDragSource

dragEnter(DropTargetDragEvent) - Method in class org.catacomb.druid.swing.DTreeDropTarget

dragExit(DragSourceEvent) - Method in class org.catacomb.druid.swing.dnd.RegionDragSource

dragExit(DropTargetEvent) - Method in class org.catacomb.druid.swing.dnd.RegionDropTarget

dragExit(DropTargetEvent) - Method in class org.catacomb.druid.swing.dnd.TextFieldDropTarget

dragExit(DragSourceEvent) - Method in class org.catacomb.druid.swing.DTreeDragSource

dragExit(DropTargetEvent) - Method in class org.catacomb.druid.swing.DTreeDropTarget

draggable - Variable in class org.catacomb.druid.blocks.TreePanel

draggable() - Method in class org.catacomb.druid.swing.dnd.Region

dragGestureRecognized(DragGestureEvent) - Method in class org.catacomb.druid.swing.dnd.RegionDragSource

dragGestureRecognized(DragGestureEvent) - Method in class org.catacomb.druid.swing.DTreeDragSource

dragging - Variable in class org.catacomb.graph.gui.ClickZoomHandler

dragging - Variable in class org.textensor.vis.SceneGraphViewer

dragImage - Variable in class org.catacomb.druid.swing.dnd.DdndTransferable

dragImage - Variable in class org.catacomb.druid.swing.dnd.DragAndDrop

dragImg - Variable in class org.catacomb.druid.swing.DTreeDragSource

dragMouseMoved(DragSourceDragEvent) - Method in class org.catacomb.druid.swing.dnd.RegionDragSource

dragMouseMoved(DragSourceDragEvent) - Method in class org.catacomb.druid.swing.DTreeDragSource

dragOffset - Variable in class org.catacomb.druid.swing.dnd.DdndTransferable

dragOffset - Variable in class org.catacomb.druid.swing.dnd.DragAndDrop

dragOffX - Variable in class org.catacomb.druid.swing.DDropCanvas

dragOffY - Variable in class org.catacomb.druid.swing.DDropCanvas

dragOnFloat - Variable in class org.catacomb.druid.swing.DDropCanvas

dragOver(DragSourceDragEvent) - Method in class org.catacomb.druid.swing.dnd.RegionDragSource

dragOver(DropTargetDragEvent) - Method in class org.catacomb.druid.swing.dnd.RegionDropTarget

dragOver(int, int) - Method in class org.catacomb.druid.swing.dnd.RegionStore

dragOver(DropTargetDragEvent) - Method in class org.catacomb.druid.swing.dnd.TextFieldDropTarget

dragOver(DragSourceDragEvent) - Method in class org.catacomb.druid.swing.DTreeDragSource

dragOver(DropTargetDragEvent) - Method in class org.catacomb.druid.swing.DTreeDropTarget

dragOverRegion - Variable in class org.catacomb.druid.swing.dnd.RegionStore

dragRollRotate(int, int) - Method in class org.catacomb.graph.gui.Mouse

dragRollRotate(int, int) - Method in class org.catacomb.graph.gui.WorldCanvas

dragRollRotate(int, int) - Method in class org.catacomb.graph.gui.WorldTransform

dragSource - Variable in class org.catacomb.druid.blocks.ScrollableTextPanel

dragSource - Variable in class org.catacomb.druid.blocks.TextPanel

dragSource - Variable in class org.catacomb.druid.swing.dnd.DragAndDrop

dragSource - Variable in class org.catacomb.druid.swing.dnd.RegionBoard

dragZoom(double, double, int, int) - Method in class org.catacomb.graph.gui.Mouse

dragZoom(double, double, int, int) - Method in class org.catacomb.graph.gui.WorldCanvas

dragZoom(double, double, int, int) - Method in class org.catacomb.graph.gui.WorldTransform

dragZRotate(int, int) - Method in class org.catacomb.graph.gui.Mouse

dragZRotate(int, int) - Method in class org.catacomb.graph.gui.WorldCanvas

dragZRotate(int, int) - Method in class org.catacomb.graph.gui.WorldTransform

draw3DAreaMarks(float[][], int, double) - Method in class org.catacomb.graph.gui.Painter

draw3DCarrot(double, double, double, double, double, double, double, double) - Method in class org.catacomb.graph.gui.Painter

draw3DCircle(double, double, double, double) - Method in class org.catacomb.graph.gui.Painter

draw3DIntMarks(float[][], int, int, int) - Method in class org.catacomb.graph.gui.Painter

draw3DLine(double, double, double, double, double, double) - Method in class org.catacomb.graph.gui.Painter

draw3DMark(double, double, double, int, int) - Method in class org.catacomb.graph.gui.Painter

draw3DMarks(float[][], int) - Method in class org.catacomb.graph.gui.Painter

draw3DOutline(double, double, double, double, double, double, double, double) - Method in class org.catacomb.graph.gui.Painter

draw3DPoint(double, double, double) - Method in class org.catacomb.graph.gui.Painter

draw3DPolygon(double[][]) - Method in class org.catacomb.graph.gui.Painter

draw3DSegment(double, double, double, double, double, double, double, double) - Method in class org.catacomb.graph.gui.Painter

draw3DZOffsetLine(double, double, double, double, double, double, double, double) - Method in class org.catacomb.graph.gui.Painter

drawAreaMarks(double[], double[], double) - Method in class org.catacomb.graph.gui.Painter

drawAxes() - Method in class org.catacomb.dataview.AxisPainter

drawAxes() - Method in class org.catacomb.graph.gui.Painter

drawAxis(Graphics) - Method in class org.catacomb.graph.gui.XAxisCanvas

drawAxis(Graphics2D) - Method in class org.catacomb.graph.gui.YAxisCanvas

drawBracketedList(Graphics2D, FontMetrics, String[]) - Method in class org.catacomb.druid.xtext.canvas.DataBoard

drawCable(Position, Position, Position) - Method in class org.catacomb.graph.gui.Painter

drawCarrotSides(double, double, double, double, double, double) - Method in class org.catacomb.graph.gui.Painter

drawCenteredBox(Position, int, int) - Method in class org.catacomb.graph.gui.Painter

drawCenteredLabel(String, double, double) - Method in class org.catacomb.graph.gui.Painter

drawCenteredOval(double, double, double, double, Color, double, boolean) - Method in class org.catacomb.graph.gui.Painter

drawCenteredOval(double, double, int, int) - Method in class org.catacomb.graph.gui.Painter

drawCenteredOval(Position, int, int) - Method in class org.catacomb.graph.gui.Painter

drawCenteredPixelLine(double, double, int[], int[]) - Method in class org.catacomb.graph.gui.Painter

drawCenteredString(String, int, int) - Method in class org.catacomb.graph.gui.Painter

drawCircle(double, double, double) - Method in class org.catacomb.graph.gui.Painter

drawCircle(Position, double) - Method in class org.catacomb.graph.gui.Painter

drawColoredCells(double[][][], double[]) - Method in class org.catacomb.graph.gui.Painter

drawColoredCells(double[][][], double[], boolean[]) - Method in class org.catacomb.graph.gui.Painter

drawDashedRectangle(double, double, double, double) - Method in class org.catacomb.graph.gui.Painter

drawData(PaintInstructor, File) - Method in class org.catacomb.dataview.GraphMaker

drawDivider - Variable in class org.catacomb.graph.gui.AboveBelowSplitPanel

drawFilledOval(double, double, double, double, Color, Color, double, boolean) - Method in class org.catacomb.graph.gui.Painter

drawFilledRectangle(double, double, int, int, Color) - Method in class org.catacomb.graph.gui.Painter

drawFilledRectangle(double, double, double, double, Color, Color, double, boolean) - Method in class org.catacomb.graph.gui.Painter

drawFilledTriangle(double, double, double, double, double, double, Color, Color, double, boolean) - Method in class org.catacomb.graph.gui.Painter

drawFixedSizeLine(double, double, Color, int, int, int) - Method in class org.catacomb.graph.gui.Painter

drawGrid - Variable in class org.catacomb.graph.gui.PickWorldCanvas

drawHalfCable(double, double, double, double, double, double, int) - Method in class org.catacomb.graph.gui.Painter

DrawingCanvas - Class in org.catacomb.druid.blocks

DrawingCanvas() - Constructor for class org.catacomb.druid.blocks.DrawingCanvas

drawingCanvas - Variable in class org.catacomb.druid.gui.base.DruDrawingCanvas

DrawingCanvas - Class in org.catacomb.graph.gui

DrawingCanvas(int, int) - Constructor for class org.catacomb.graph.gui.DrawingCanvas

DrawingPainter - Class in org.catacomb.graph.drawing

DrawingPainter() - Constructor for class org.catacomb.graph.drawing.DrawingPainter

DrawingXFIGEtAl - Class in org.catacomb.graph.drawing

DrawingXFIGEtAl() - Constructor for class org.catacomb.graph.drawing.DrawingXFIGEtAl

drawIntCircle(double, double, int) - Method in class org.catacomb.graph.gui.Painter

drawIntMarks(double[], double[], int, int, int) - Method in class org.catacomb.graph.gui.Painter

drawLabel(String, double, double, Color) - Method in class org.catacomb.graph.gui.Painter

drawLabel(String, double, double) - Method in class org.catacomb.graph.gui.Painter

drawLabelAt(String, int, int) - Method in class org.catacomb.graph.gui.Painter

drawLeftAlignedLabel(String, double, double) - Method in class org.catacomb.graph.gui.Painter

drawLine(double, double, double, double, Color, double, boolean) - Method in class org.catacomb.graph.gui.Painter

drawLine(Position, Position) - Method in class org.catacomb.graph.gui.Painter

drawLine(double, double, double, double) - Method in class org.catacomb.graph.gui.Painter

drawLine - Variable in class org.catacomb.graph.gui.VerticalAxisGraphDivider

drawLineOffsetText(String, double, double, int, int) - Method in class org.catacomb.graph.gui.Painter

drawMarks(double[], double[]) - Method in class org.catacomb.graph.gui.Painter

drawMarks(double[], double[], int) - Method in class org.catacomb.graph.gui.Painter

drawOffsetCenteredLabel(String, double, double) - Method in class org.catacomb.graph.gui.Painter

drawOutline(double, double, double, double, double, double) - Method in class org.catacomb.graph.gui.Painter

drawOval(double, double, double, double, Color, double, boolean) - Method in class org.catacomb.graph.gui.Painter

drawPixelLine(int, int, int, int) - Method in class org.catacomb.graph.gui.Painter

drawPolygon(double[], double[]) - Method in class org.catacomb.graph.gui.Painter

drawPolygon(double[], double[], int) - Method in class org.catacomb.graph.gui.Painter

drawPolygon(double[], double[], int, Color, double, boolean) - Method in class org.catacomb.graph.gui.Painter

drawPolyline(double[], double[]) - Method in class org.catacomb.graph.gui.Painter

drawPolyline(double[], double[], int) - Method in class org.catacomb.graph.gui.Painter

drawPolyline(double[], double[], int, Color, double, boolean) - Method in class org.catacomb.graph.gui.Painter

drawRectangle(double, double, double, double, Color, double, boolean) - Method in class org.catacomb.graph.gui.Painter

drawRectangle(int[]) - Method in class org.catacomb.graph.gui.Painter

drawRelation(Graphics2D, int, XRelationType) - Method in class org.catacomb.druid.xtext.edit.XRelationTree

drawRightAlignedLabel(String, double, double) - Method in class org.catacomb.graph.gui.Painter

drawSegment(Painter, SegmentGraphPoint, SegmentGraphPoint) - Method in class org.catacomb.graph.arbor.SegmentGraphPainter

drawSegment(Painter, SegmentGraphPoint, SegmentGraphPoint) - Method in class org.catacomb.graph.arbor.SegmentGraphVE

drawSides(double, double, double, double, double, double) - Method in class org.catacomb.graph.gui.Painter

drawSome3DMarks(float[][], int, double) - Method in class org.catacomb.graph.gui.Painter

drawString(String, int, int) - Method in class org.catacomb.graph.gui.Painter

drawString3D(double, double, double, String) - Method in class org.catacomb.graph.gui.Painter

drawString3DOffset(double, double, double, String, int, int) - Method in class org.catacomb.graph.gui.Painter

drawText(String, double, double) - Method in class org.catacomb.graph.gui.Painter

drawType(Graphics2D, int, int, XType, String) - Method in class org.catacomb.druid.xtext.edit.XTypeTree

drawUpButton(Graphics, int, int, int, int) - Method in class org.catacomb.druid.swing.DFloatSlider

drawUpButton(Graphics, int, int, int, int) - Method in class org.catacomb.druid.swing.DSlider

drawUpButton(Graphics, Color, int, int, int, int) - Static method in class org.catacomb.druid.swing.Relief

drawUpLabel(String, double, double, Color) - Method in class org.catacomb.graph.gui.Painter

drawUpLabel(String, double, double) - Method in class org.catacomb.graph.gui.Painter

drawUpper3DAreaMarks(float[][], int, double, double, double) - Method in class org.catacomb.graph.gui.Painter

drawUpper3DIntMarks(float[][], int, int, int, double, double) - Method in class org.catacomb.graph.gui.Painter

drawUpperSome3DMarks(float[][], int, double, double, double) - Method in class org.catacomb.graph.gui.Painter

drawWhiteLine(double, double[], double[]) - Method in class org.catacomb.graph.gui.Painter

drawXAxis() - Method in class org.catacomb.dataview.AxisPainter

drawXCenteredYBottomAlignedLabel(String, double, double) - Method in class org.catacomb.graph.gui.Painter

drawXCenteredYTopAlignedLabel(String, double, double) - Method in class org.catacomb.graph.gui.Painter

drawYAxis() - Method in class org.catacomb.dataview.AxisPainter

dRenderer - Variable in class org.catacomb.druid.gui.base.DruListColorRenderer

dRenderer - Variable in class org.catacomb.druid.gui.base.DruListProgressRenderer

dRenderer - Variable in class org.catacomb.druid.gui.base.DruListQuantityRenderer

drive - Variable in class org.catacomb.numeric.difnet.calc.NetMapLink

drive - Variable in class org.catacomb.numeric.difnet.model.BasicStateLink

drop() - Method in class org.catacomb.druid.swing.DDropCanvas

DROP - Static variable in class org.catacomb.druid.swing.dnd.Region

drop(DropTargetDropEvent) - Method in class org.catacomb.druid.swing.dnd.RegionDropTarget

drop(DropTargetDropEvent) - Method in class org.catacomb.druid.swing.dnd.TextFieldDropTarget

drop(DropTargetDropEvent) - Method in class org.catacomb.druid.swing.DTreeDropTarget

dropActionChanged(DragSourceDragEvent) - Method in class org.catacomb.druid.swing.dnd.RegionDragSource

dropActionChanged(DropTargetDragEvent) - Method in class org.catacomb.druid.swing.dnd.RegionDropTarget

dropActionChanged(DropTargetDragEvent) - Method in class org.catacomb.druid.swing.dnd.TextFieldDropTarget

dropActionChanged(DragSourceDragEvent) - Method in class org.catacomb.druid.swing.DTreeDragSource

dropActionChanged(DropTargetDragEvent) - Method in class org.catacomb.druid.swing.DTreeDropTarget

DropBox - Class in org.catacomb.druid.blocks

DropBox() - Constructor for class org.catacomb.druid.blocks.DropBox

dropee - Variable in class org.catacomb.druid.swing.DDropCanvas

dropee - Variable in class org.catacomb.druid.swing.DDropTextField

dropEvents - Variable in class org.catacomb.druid.gui.edit.DruTreePanel

dropEvents - Variable in class org.catacomb.druid.swing.DCheckboxList

dropEvents - Variable in class org.catacomb.druid.swing.DList

dropGeneral(Object) - Method in class org.catacomb.druid.swing.dnd.RegionBoard

dropGeneral(Object) - Method in class org.catacomb.druid.xtext.canvas.DataBoard

dropGeneral(Object) - Method in class org.catacomb.druid.xtext.edit.TrashBoard

dropGeneral(Object) - Method in class org.catacomb.druid.xtext.edit.XRelationTree

dropGeneral(Object) - Method in class org.catacomb.druid.xtext.edit.XTypeTree

dropOn(Object, Region) - Method in class org.catacomb.druid.swing.dnd.RegionBoard

dropOn(Object, Region) - Method in class org.catacomb.druid.xtext.canvas.DataBoard

dropOn(Object, String, Object, String) - Method in class org.catacomb.druid.xtext.canvas.TextBoard

dropOn(Object, Region) - Method in class org.catacomb.druid.xtext.edit.TrashBoard

dropOn(Object, Region) - Method in class org.catacomb.druid.xtext.edit.XRelationTree

dropOn(Object, Region) - Method in class org.catacomb.druid.xtext.edit.XTypeTree

dropTarget - Variable in class org.catacomb.druid.swing.DDropTextField

dropTarget - Variable in class org.catacomb.druid.swing.dnd.RegionBoard

DruAbleEffect - Class in org.catacomb.druid.gui.base

DruAbleEffect(String, boolean, String) - Constructor for class org.catacomb.druid.gui.base.DruAbleEffect

DruActionRelay - Class in org.catacomb.druid.gui.base

DruActionRelay(Object) - Constructor for class org.catacomb.druid.gui.base.DruActionRelay

DruAppletPrep - Class in org.catacomb.druid.gui.base

DruAppletPrep() - Constructor for class org.catacomb.druid.gui.base.DruAppletPrep

DruApplication - Class in org.catacomb.druid.gui.base

DruApplication() - Constructor for class org.catacomb.druid.gui.base.DruApplication

DruAssemblyPanel - Class in org.catacomb.druid.gui.base

DruAssemblyPanel(int, int, String) - Constructor for class org.catacomb.druid.gui.base.DruAssemblyPanel

DruAutonomousDialog - Class in org.catacomb.druid.gui.base

DruAutonomousDialog() - Constructor for class org.catacomb.druid.gui.base.DruAutonomousDialog

DruAutonomousPanel - Class in org.catacomb.druid.gui.base

DruAutonomousPanel() - Constructor for class org.catacomb.druid.gui.base.DruAutonomousPanel

DruBorderPanel - Class in org.catacomb.druid.gui.base

DruBorderPanel() - Constructor for class org.catacomb.druid.gui.base.DruBorderPanel

DruBorderPanel(int, int) - Constructor for class org.catacomb.druid.gui.base.DruBorderPanel

DruBorderPanel(int, int, int) - Constructor for class org.catacomb.druid.gui.base.DruBorderPanel

DruBoxPanel - Class in org.catacomb.druid.gui.base

DruBoxPanel() - Constructor for class org.catacomb.druid.gui.base.DruBoxPanel

DruBoxPanel(int) - Constructor for class org.catacomb.druid.gui.base.DruBoxPanel

DruBoxPanel(int, int) - Constructor for class org.catacomb.druid.gui.base.DruBoxPanel

druBoxPanel - Variable in class org.catacomb.druid.gui.base.DruFloatBoxPanel

DruBrowserPanel - Class in org.catacomb.druid.gui.base

DruBrowserPanel() - Constructor for class org.catacomb.druid.gui.base.DruBrowserPanel

DruBrowserPanel(String) - Constructor for class org.catacomb.druid.gui.base.DruBrowserPanel

DruBrowserPanel(HTMLPage) - Constructor for class org.catacomb.druid.gui.base.DruBrowserPanel

DruButton - Class in org.catacomb.druid.gui.edit

DruButton(String) - Constructor for class org.catacomb.druid.gui.edit.DruButton

DruButton(String, String) - Constructor for class org.catacomb.druid.gui.edit.DruButton

DruButtonGroup - Class in org.catacomb.druid.gui.base

DruButtonGroup(String) - Constructor for class org.catacomb.druid.gui.base.DruButtonGroup

DruCardPanel - Class in org.catacomb.druid.gui.base

DruCardPanel() - Constructor for class org.catacomb.druid.gui.base.DruCardPanel

DruCardSelectionEffect - Class in org.catacomb.druid.gui.base

DruCardSelectionEffect(String, String) - Constructor for class org.catacomb.druid.gui.base.DruCardSelectionEffect

DruCheckbox - Class in org.catacomb.druid.gui.edit

DruCheckbox() - Constructor for class org.catacomb.druid.gui.edit.DruCheckbox

DruCheckbox(String, String) - Constructor for class org.catacomb.druid.gui.edit.DruCheckbox

DruCheckboxListPanel - Class in org.catacomb.druid.gui.edit

DruCheckboxListPanel() - Constructor for class org.catacomb.druid.gui.edit.DruCheckboxListPanel

DruCheckboxListPanel(int) - Constructor for class org.catacomb.druid.gui.edit.DruCheckboxListPanel

DruCheckboxMenuItem - Class in org.catacomb.druid.gui.edit

DruCheckboxMenuItem(String, String) - Constructor for class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

DruCheckboxTreePanel - Class in org.catacomb.druid.gui.edit

DruCheckboxTreePanel() - Constructor for class org.catacomb.druid.gui.edit.DruCheckboxTreePanel

DruChoice - Class in org.catacomb.druid.gui.edit

DruChoice(String[], String) - Constructor for class org.catacomb.druid.gui.edit.DruChoice

DruChoice(String, String) - Constructor for class org.catacomb.druid.gui.edit.DruChoice

DruChoice(String, String[], String[], String) - Constructor for class org.catacomb.druid.gui.edit.DruChoice

DruCloseEffect - Class in org.catacomb.druid.gui.base

DruCloseEffect(String) - Constructor for class org.catacomb.druid.gui.base.DruCloseEffect

DruCollapsiblePanel - Class in org.catacomb.druid.gui.base

DruCollapsiblePanel() - Constructor for class org.catacomb.druid.gui.base.DruCollapsiblePanel

DruColorChoice - Class in org.catacomb.druid.gui.edit

DruColorChoice(String, String) - Constructor for class org.catacomb.druid.gui.edit.DruColorChoice

DruDataDisplay - Class in org.catacomb.druid.gui.base

DruDataDisplay(int, int) - Constructor for class org.catacomb.druid.gui.base.DruDataDisplay

druDialog - Variable in class org.catacomb.druid.gui.base.DruAutonomousDialog

DruDialog - Class in org.catacomb.druid.gui.base

DruDialog(DruFrame, String) - Constructor for class org.catacomb.druid.gui.base.DruDialog

druDisable() - Method in class org.catacomb.druid.gui.edit.DruDropBox

DruDotsPanel - Class in org.catacomb.druid.gui.base

DruDotsPanel() - Constructor for class org.catacomb.druid.gui.base.DruDotsPanel

DruDrawingCanvas - Class in org.catacomb.druid.gui.base

DruDrawingCanvas(int, int) - Constructor for class org.catacomb.druid.gui.base.DruDrawingCanvas

DruDropBox - Class in org.catacomb.druid.gui.edit

DruDropBox() - Constructor for class org.catacomb.druid.gui.edit.DruDropBox

DruEditorWindow - Class in org.catacomb.druid.gui.base

DruEditorWindow() - Constructor for class org.catacomb.druid.gui.base.DruEditorWindow

druEnable() - Method in class org.catacomb.druid.gui.edit.DruDropBox

DruExpandingTextArea - Class in org.catacomb.druid.gui.edit

DruExpandingTextArea(String, int, int) - Constructor for class org.catacomb.druid.gui.edit.DruExpandingTextArea

DruFillGuage - Class in org.catacomb.druid.gui.edit

DruFillGuage(double, String) - Constructor for class org.catacomb.druid.gui.edit.DruFillGuage

DruFloat - Class in org.catacomb.druid.gui.edit

DruFloat(double, double, double, String) - Constructor for class org.catacomb.druid.gui.edit.DruFloat

DruFloatBoxPanel - Class in org.catacomb.druid.gui.base

DruFloatBoxPanel() - Constructor for class org.catacomb.druid.gui.base.DruFloatBoxPanel

DruFloatBoxPanel(int) - Constructor for class org.catacomb.druid.gui.base.DruFloatBoxPanel

DruFlowPanel - Class in org.catacomb.druid.gui.base

DruFlowPanel() - Constructor for class org.catacomb.druid.gui.base.DruFlowPanel

DruFlowPanel(int) - Constructor for class org.catacomb.druid.gui.base.DruFlowPanel

DruFlowPanel(int, int, int) - Constructor for class org.catacomb.druid.gui.base.DruFlowPanel

DruFormPanel - Class in org.catacomb.druid.gui.base

DruFormPanel() - Constructor for class org.catacomb.druid.gui.base.DruFormPanel

DruFrame - Class in org.catacomb.druid.gui.base

DruFrame(String) - Constructor for class org.catacomb.druid.gui.base.DruFrame

DruGCPanel - Class in org.catacomb.druid.gui.edit

DruGCPanel() - Constructor for class org.catacomb.druid.gui.edit.DruGCPanel

DruGridPanel - Class in org.catacomb.druid.gui.base

DruGridPanel(int, int, int, int) - Constructor for class org.catacomb.druid.gui.base.DruGridPanel

DruHRPanel - Class in org.catacomb.druid.gui.base

DruHRPanel() - Constructor for class org.catacomb.druid.gui.base.DruHRPanel

DruHTMLPanel - Class in org.catacomb.druid.gui.edit

DruHTMLPanel() - Constructor for class org.catacomb.druid.gui.edit.DruHTMLPanel

Druid - Class in org.catacomb.druid.build

Druid(String) - Constructor for class org.catacomb.druid.build.Druid

Druid(String, Context) - Constructor for class org.catacomb.druid.build.Druid

druid - Variable in class org.catacomb.druid.dialog.CheckSeenDialogController

druid - Variable in class org.catacomb.druid.dialog.DialogController

DruidAppBase - Class in org.catacomb.druid.load

DruidAppBase(String) - Constructor for class org.catacomb.druid.load.DruidAppBase

DruidContentLoader - Class in org.catacomb.druid.load

DruidContentLoader() - Constructor for class org.catacomb.druid.load.DruidContentLoader

DruidResourceLoader - Class in org.catacomb.druid.load

DruidResourceLoader() - Constructor for class org.catacomb.druid.load.DruidResourceLoader

DruidTabbedPaneUI - Class in org.catacomb.druid.swing.laf

DruidTabbedPaneUI() - Constructor for class org.catacomb.druid.swing.laf.DruidTabbedPaneUI

DruidTargetStore - Class in org.catacomb.druid.build

DruidTargetStore() - Constructor for class org.catacomb.druid.build.DruidTargetStore

DruidTreeUI - Class in org.catacomb.druid.swing.ui

DruidTreeUI() - Constructor for class org.catacomb.druid.swing.ui.DruidTreeUI

DruImageLabelPanel - Class in org.catacomb.druid.gui.base

DruImageLabelPanel() - Constructor for class org.catacomb.druid.gui.base.DruImageLabelPanel

DruInfoEffect - Class in org.catacomb.druid.gui.base

DruInfoEffect(String, String, InfoReceiver) - Constructor for class org.catacomb.druid.gui.base.DruInfoEffect

druInfoPanel - Variable in class org.catacomb.druid.dialog.CheckSeenDialogController

DruInfoPanel - Class in org.catacomb.druid.gui.base

DruInfoPanel() - Constructor for class org.catacomb.druid.gui.base.DruInfoPanel

DruInfoPanel(String) - Constructor for class org.catacomb.druid.gui.base.DruInfoPanel

DruInfoPanel(String, int, int) - Constructor for class org.catacomb.druid.gui.base.DruInfoPanel

DruInsert - Class in org.catacomb.druid.gui.base

DruInsert() - Constructor for class org.catacomb.druid.gui.base.DruInsert

DruInt - Class in org.catacomb.druid.gui.edit

DruInt(int, int, int, String) - Constructor for class org.catacomb.druid.gui.edit.DruInt

DruKitPanel - Class in org.catacomb.druid.gui.base

DruKitPanel() - Constructor for class org.catacomb.druid.gui.base.DruKitPanel

DruLabel - Class in org.catacomb.druid.gui.base

DruLabel(String) - Constructor for class org.catacomb.druid.gui.base.DruLabel

DruLabel(String, String) - Constructor for class org.catacomb.druid.gui.base.DruLabel

DruLabelledTextField - Class in org.catacomb.druid.gui.edit

DruLabelledTextField() - Constructor for class org.catacomb.druid.gui.edit.DruLabelledTextField

DruLabelledTextField(String) - Constructor for class org.catacomb.druid.gui.edit.DruLabelledTextField

DruLabelledTextField(String, String, int, boolean) - Constructor for class org.catacomb.druid.gui.edit.DruLabelledTextField

DruLabelPanel - Class in org.catacomb.druid.gui.base

DruLabelPanel(String, String) - Constructor for class org.catacomb.druid.gui.base.DruLabelPanel

DruLeftRightSplitPanel - Class in org.catacomb.druid.gui.base

DruLeftRightSplitPanel() - Constructor for class org.catacomb.druid.gui.base.DruLeftRightSplitPanel

DruLinkHandler - Class in org.catacomb.druid.gui.base

DruLinkHandler(PageSupplier, PageDisplay) - Constructor for class org.catacomb.druid.gui.base.DruLinkHandler

DruListCellRenderer - Interface in org.catacomb.druid.gui.base

DruListClickActor - Class in org.catacomb.druid.gui.base

DruListClickActor(int, int, String) - Constructor for class org.catacomb.druid.gui.base.DruListClickActor

DruListColorRenderer - Class in org.catacomb.druid.gui.base

DruListColorRenderer() - Constructor for class org.catacomb.druid.gui.base.DruListColorRenderer

DruListPanel - Class in org.catacomb.druid.gui.edit

DruListPanel() - Constructor for class org.catacomb.druid.gui.edit.DruListPanel

DruListPanel(int) - Constructor for class org.catacomb.druid.gui.edit.DruListPanel

DruListProgressRenderer - Class in org.catacomb.druid.gui.base

DruListProgressRenderer() - Constructor for class org.catacomb.druid.gui.base.DruListProgressRenderer

DruListQuantityRenderer - Class in org.catacomb.druid.gui.base

DruListQuantityRenderer() - Constructor for class org.catacomb.druid.gui.base.DruListQuantityRenderer

DruLoggedButton - Class in org.catacomb.druid.gui.edit

DruLoggedButton(String) - Constructor for class org.catacomb.druid.gui.edit.DruLoggedButton

DruLogPanel - Class in org.catacomb.druid.gui.edit

DruLogPanel(int) - Constructor for class org.catacomb.druid.gui.edit.DruLogPanel

DruMenu - Class in org.catacomb.druid.gui.edit

DruMenu(String) - Constructor for class org.catacomb.druid.gui.edit.DruMenu

DruMenuBar - Class in org.catacomb.druid.gui.base

DruMenuBar(String) - Constructor for class org.catacomb.druid.gui.base.DruMenuBar

DruMenuButton - Class in org.catacomb.druid.gui.edit

DruMenuButton(String) - Constructor for class org.catacomb.druid.gui.edit.DruMenuButton

DruMenuItem - Class in org.catacomb.druid.gui.edit

DruMenuItem(String, String) - Constructor for class org.catacomb.druid.gui.edit.DruMenuItem

DruMovieDisplay - Class in org.catacomb.druid.gui.base

DruMovieDisplay(int, int) - Constructor for class org.catacomb.druid.gui.base.DruMovieDisplay

DruMultiSplitPanel - Class in org.catacomb.druid.gui.base

DruMultiSplitPanel(int) - Constructor for class org.catacomb.druid.gui.base.DruMultiSplitPanel

druPanel - Variable in class org.catacomb.druid.gui.base.DruAppletPrep

druPanel - Variable in class org.catacomb.druid.gui.base.DruFrame

DruPanel - Class in org.catacomb.druid.gui.base

DruPanel() - Constructor for class org.catacomb.druid.gui.base.DruPanel

DruPanel(int) - Constructor for class org.catacomb.druid.gui.base.DruPanel

DruPlaceholderPanel - Class in org.catacomb.druid.gui.base

DruPlaceholderPanel(String) - Constructor for class org.catacomb.druid.gui.base.DruPlaceholderPanel

DruPrintEffect - Class in org.catacomb.druid.gui.base

DruPrintEffect(String) - Constructor for class org.catacomb.druid.gui.base.DruPrintEffect

DruProgressReport - Class in org.catacomb.druid.gui.edit

DruProgressReport() - Constructor for class org.catacomb.druid.gui.edit.DruProgressReport

DruPseudoCardPanel - Class in org.catacomb.druid.gui.base

DruPseudoCardPanel() - Constructor for class org.catacomb.druid.gui.base.DruPseudoCardPanel

DruRadioButtons - Class in org.catacomb.druid.gui.edit

DruRadioButtons(String, String, String) - Constructor for class org.catacomb.druid.gui.edit.DruRadioButtons

DruRightAlignedLabel - Class in org.catacomb.druid.gui.base

DruRightAlignedLabel(String) - Constructor for class org.catacomb.druid.gui.base.DruRightAlignedLabel

DruRoot - Class in org.catacomb.druid.gui.base

DruRoot() - Constructor for class org.catacomb.druid.gui.base.DruRoot

DruScratchPanel - Class in org.catacomb.druid.gui.base

DruScratchPanel() - Constructor for class org.catacomb.druid.gui.base.DruScratchPanel

DruScrollableBorderPanel - Class in org.catacomb.druid.gui.base

DruScrollableBorderPanel(int, int) - Constructor for class org.catacomb.druid.gui.base.DruScrollableBorderPanel

DruScrollableTextPanel - Class in org.catacomb.druid.gui.base

DruScrollableTextPanel() - Constructor for class org.catacomb.druid.gui.base.DruScrollableTextPanel

DruScrollingCheckboxListPanel - Class in org.catacomb.druid.gui.edit

DruScrollingCheckboxListPanel() - Constructor for class org.catacomb.druid.gui.edit.DruScrollingCheckboxListPanel

DruScrollingCheckboxListPanel(int) - Constructor for class org.catacomb.druid.gui.edit.DruScrollingCheckboxListPanel

DruScrollingHTMLPanel - Class in org.catacomb.druid.gui.base

DruScrollingHTMLPanel() - Constructor for class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

DruScrollingInfoPanel - Class in org.catacomb.druid.gui.base

DruScrollingInfoPanel() - Constructor for class org.catacomb.druid.gui.base.DruScrollingInfoPanel

DruScrollingInfoPanel(String) - Constructor for class org.catacomb.druid.gui.base.DruScrollingInfoPanel

DruScrollingInfoPanel(String, int, int) - Constructor for class org.catacomb.druid.gui.base.DruScrollingInfoPanel

DruScrollingListPanel - Class in org.catacomb.druid.gui.edit

DruScrollingListPanel() - Constructor for class org.catacomb.druid.gui.edit.DruScrollingListPanel

DruScrollingListPanel(int) - Constructor for class org.catacomb.druid.gui.edit.DruScrollingListPanel

DruScrollPanel - Class in org.catacomb.druid.gui.base

DruScrollPanel() - Constructor for class org.catacomb.druid.gui.base.DruScrollPanel

DruSimpleSlider - Class in org.catacomb.druid.gui.edit

DruSimpleSlider(int, int, String, String) - Constructor for class org.catacomb.druid.gui.edit.DruSimpleSlider

DruSlider - Class in org.catacomb.druid.gui.edit

DruSlider(int, String) - Constructor for class org.catacomb.druid.gui.edit.DruSlider

DruSplitterBar - Class in org.catacomb.druid.gui.base

DruSplitterBar() - Constructor for class org.catacomb.druid.gui.base.DruSplitterBar

DruStatusBar - Class in org.catacomb.druid.gui.base

DruStatusBar() - Constructor for class org.catacomb.druid.gui.base.DruStatusBar

DruSubcontainerPanel - Class in org.catacomb.druid.gui.base

DruSubcontainerPanel() - Constructor for class org.catacomb.druid.gui.base.DruSubcontainerPanel

DruSuggestEffect - Class in org.catacomb.druid.gui.base

DruSuggestEffect(String) - Constructor for class org.catacomb.druid.gui.base.DruSuggestEffect

DruTabbedPanel - Class in org.catacomb.druid.gui.base

DruTabbedPanel() - Constructor for class org.catacomb.druid.gui.base.DruTabbedPanel

DruTabbedPanel(String) - Constructor for class org.catacomb.druid.gui.base.DruTabbedPanel

DruTextArea - Class in org.catacomb.druid.gui.edit

DruTextArea(String, int, int) - Constructor for class org.catacomb.druid.gui.edit.DruTextArea

DruTextField - Class in org.catacomb.druid.gui.edit

DruTextField() - Constructor for class org.catacomb.druid.gui.edit.DruTextField

DruTextField(String) - Constructor for class org.catacomb.druid.gui.edit.DruTextField

DruTextField(String, int) - Constructor for class org.catacomb.druid.gui.edit.DruTextField

DruTextPanel - Class in org.catacomb.druid.gui.base

DruTextPanel() - Constructor for class org.catacomb.druid.gui.base.DruTextPanel

DruToggleButton - Class in org.catacomb.druid.gui.edit

DruToggleButton(String, String) - Constructor for class org.catacomb.druid.gui.edit.DruToggleButton

DruToggleListPanel - Class in org.catacomb.druid.gui.edit

DruToggleListPanel() - Constructor for class org.catacomb.druid.gui.edit.DruToggleListPanel

DruToggleListPanel(int) - Constructor for class org.catacomb.druid.gui.edit.DruToggleListPanel

DruTooltips - Class in org.catacomb.druid.gui.base

DruTooltips() - Constructor for class org.catacomb.druid.gui.base.DruTooltips

DruTreePanel - Class in org.catacomb.druid.gui.edit

DruTreePanel() - Constructor for class org.catacomb.druid.gui.edit.DruTreePanel

DruUpDownSplitPanel - Class in org.catacomb.druid.gui.base

DruUpDownSplitPanel() - Constructor for class org.catacomb.druid.gui.base.DruUpDownSplitPanel

DruVerticalBoxPanel - Class in org.catacomb.druid.gui.base

DruVerticalBoxPanel() - Constructor for class org.catacomb.druid.gui.base.DruVerticalBoxPanel

DruWindowEditEffect - Class in org.catacomb.druid.gui.edit

DruWindowEditEffect(String, String) - Constructor for class org.catacomb.druid.gui.edit.DruWindowEditEffect

DScrollablePanel - Class in org.catacomb.druid.swing

DScrollablePanel() - Constructor for class org.catacomb.druid.swing.DScrollablePanel

DScrollPane - Class in org.catacomb.druid.swing

DScrollPane() - Constructor for class org.catacomb.druid.swing.DScrollPane

DScrollPane(JComponent) - Constructor for class org.catacomb.druid.swing.DScrollPane

DSimpleSlider - Class in org.catacomb.druid.swing

DSimpleSlider(int, int, String) - Constructor for class org.catacomb.druid.swing.DSimpleSlider

dsl - Variable in class org.textensor.stochdiff.numeric.morph.VolumeLine

DSlice - Class in org.catacomb.numeric.data

DSlice(BlockStack, String, Field, String, String) - Constructor for class org.catacomb.numeric.data.DSlice

dSlider - Variable in class org.catacomb.druid.gui.edit.DruSimpleSlider

dSlider - Variable in class org.catacomb.druid.gui.edit.DruSlider

DSlider - Class in org.catacomb.druid.swing

DSlider() - Constructor for class org.catacomb.druid.swing.DSlider

DSlider(int) - Constructor for class org.catacomb.druid.swing.DSlider

dsp - Variable in class org.catacomb.druid.gui.base.DruBrowserPanel

dsp - Variable in class org.catacomb.druid.gui.base.DruScrollingInfoPanel

dsp - Variable in class org.catacomb.druid.gui.base.DruScrollPanel

dsp - Variable in class org.catacomb.druid.gui.edit.DruLogPanel

dsp - Variable in class org.catacomb.druid.gui.edit.DruScrollingCheckboxListPanel

dsp - Variable in class org.catacomb.druid.gui.edit.DruScrollingListPanel

DSPath - Class in org.catacomb.numeric.data

DSPath() - Constructor for class org.catacomb.numeric.data.DSPath

dSplitPane - Variable in class org.catacomb.druid.gui.base.DruLeftRightSplitPanel

dSplitPane - Variable in class org.catacomb.druid.gui.base.DruUpDownSplitPanel

DSplitPane - Class in org.catacomb.druid.swing

DSplitPane(int) - Constructor for class org.catacomb.druid.swing.DSplitPane

DSplitPaneDivider - Class in org.catacomb.druid.swing

DSplitPaneDivider(DSplitPaneUI) - Constructor for class org.catacomb.druid.swing.DSplitPaneDivider

dSplitPaneUI - Variable in class org.catacomb.druid.swing.DSplitPane

DSplitPaneUI - Class in org.catacomb.druid.swing

DSplitPaneUI() - Constructor for class org.catacomb.druid.swing.DSplitPaneUI

DSplitPaneUI(JComponent) - Constructor for class org.catacomb.druid.swing.DSplitPaneUI

dSplitterBar - Variable in class org.catacomb.druid.gui.base.DruSplitterBar

DSplitterBar - Class in org.catacomb.druid.swing.split

DSplitterBar() - Constructor for class org.catacomb.druid.swing.split.DSplitterBar

DSplitterSpace - Class in org.catacomb.druid.swing.split

DSplitterSpace() - Constructor for class org.catacomb.druid.swing.split.DSplitterSpace

dspui - Variable in class org.catacomb.druid.swing.DSplitPaneDivider

DSubMenu - Class in org.catacomb.druid.swing

DSubMenu(String) - Constructor for class org.catacomb.druid.swing.DSubMenu

dt - Variable in class org.catacomb.be.TimePoint

dt - Variable in class org.textensor.stochdiff.model.OutputSet

dt - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

dt - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

dt - Variable in class org.textensor.stochdiff.numeric.pool.DeterministicPoolCalc

dt - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

dt_list - Variable in class org.textensor.stochdiff.numeric.BaseCalc

dTabbedPane - Variable in class org.catacomb.druid.gui.base.DruTabbedPanel

DTabbedPane - Class in org.catacomb.druid.swing

DTabbedPane() - Constructor for class org.catacomb.druid.swing.DTabbedPane

dTextArea - Variable in class org.catacomb.druid.gui.edit.DruExpandingTextArea

dTextArea - Variable in class org.catacomb.druid.gui.edit.DruTextArea

dTextArea - Variable in class org.catacomb.druid.gui.edit.ExpandingTextAreaController

DTextArea - Class in org.catacomb.druid.swing

DTextArea(String) - Constructor for class org.catacomb.druid.swing.DTextArea

DTextArea(int, int) - Constructor for class org.catacomb.druid.swing.DTextArea

DTextArea(int, int, String) - Constructor for class org.catacomb.druid.swing.DTextArea

DTextArea(int, int, int) - Constructor for class org.catacomb.druid.swing.DTextArea

DTextCanvas - Class in org.catacomb.druid.swing

DTextCanvas() - Constructor for class org.catacomb.druid.swing.DTextCanvas

dTextField - Variable in class org.catacomb.druid.gui.edit.DruLabelledTextField

dTextField - Variable in class org.catacomb.druid.gui.edit.DruTextField

dTextField - Variable in class org.catacomb.druid.swing.DFloat

dTextField - Variable in class org.catacomb.druid.swing.DInt

DTextField - Class in org.catacomb.druid.swing

DTextField(String, int) - Constructor for class org.catacomb.druid.swing.DTextField

DToggleButton - Class in org.catacomb.druid.swing

DToggleButton(String) - Constructor for class org.catacomb.druid.swing.DToggleButton

DToolablePanel - Class in org.catacomb.druid.swing

DToolablePanel() - Constructor for class org.catacomb.druid.swing.DToolablePanel

dTree - Variable in class org.catacomb.druid.gui.edit.DruCheckboxTreePanel

dTree - Variable in class org.catacomb.druid.gui.edit.DruTreePanel

DTree - Class in org.catacomb.druid.swing

DTree() - Constructor for class org.catacomb.druid.swing.DTree

dTreeDragSource - Variable in class org.catacomb.druid.swing.DTree

DTreeDragSource - Class in org.catacomb.druid.swing

DTreeDragSource(DTree, int) - Constructor for class org.catacomb.druid.swing.DTreeDragSource

dTreeDropTarget - Variable in class org.catacomb.druid.swing.DTree

DTreeDropTarget - Class in org.catacomb.druid.swing

DTreeDropTarget(DTree) - Constructor for class org.catacomb.druid.swing.DTreeDropTarget

dTreeExpandPath(Object[]) - Method in class org.catacomb.druid.swing.DCheckboxTree

dTreeExpandPath(Object[]) - Method in class org.catacomb.druid.swing.DTree

dTreeModel - Variable in class org.catacomb.druid.swing.DCheckboxTree

dTreeModel - Variable in class org.catacomb.druid.swing.DTree

DTreeModel - Class in org.catacomb.druid.swing

DTreeModel(Tree) - Constructor for class org.catacomb.druid.swing.DTreeModel

DTreePanel - Class in org.catacomb.druid.swing

DTreePanel(String) - Constructor for class org.catacomb.druid.swing.DTreePanel

dtsOut - Variable in class org.textensor.stochdiff.numeric.BaseCalc

dummyDoc - Variable in class org.catacomb.druid.xtext.base.DocStore

DummyTree - Class in org.catacomb.druid.gui.base

DummyTree() - Constructor for class org.catacomb.druid.gui.base.DummyTree

dump() - Method in class org.catacomb.interlish.content.KeyedList

dump() - Method in interface org.catacomb.interlish.structure.FlatDataStore

dump(String[]) - Static method in class org.catacomb.report.E

dump(String, int[]) - Static method in class org.catacomb.report.E

dump(String, double[]) - Static method in class org.catacomb.report.E

dump() - Method in class org.catacomb.serial.quickxml.Element

dump(String, double[]) - Static method in class org.textensor.report.Debug

dump(String[]) - Static method in class org.textensor.report.E

dump(String, String[]) - Static method in class org.textensor.report.E

dump(String, int[]) - Static method in class org.textensor.report.E

dump(String, double[]) - Static method in class org.textensor.report.E

dump(String, double[][]) - Static method in class org.textensor.report.E

dump() - Method in class org.textensor.stochdiff.numeric.math.Matrix

dump(SDRun) - Static method in class org.textensor.stochdiff.reduce.Reduce

dump(SDRun) - Static method in class org.textensor.stochdiff.StochDiff

dumpChildren() - Method in class org.catacomb.numeric.data.NumDataStore

dumpExamples() - Static method in class org.textensor.stochdiff.numeric.stochastic.NGoTable

dumpIDs() - Method in class org.catacomb.druid.build.Context

dumpptc(Object[]) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

dumpStore() - Method in class org.catacomb.druid.load.XMLStore

dumpTable(int, double) - Method in class org.textensor.stochdiff.numeric.stochastic.InterpolatingStepGenerator

duplicateShorts - Variable in class org.catacomb.interlish.content.KeyedList

duration - Variable in class org.textensor.stochdiff.model.InjectionStim

duration - Variable in class org.textensor.stochdiff.numeric.chem.StimulationTable

dvalue - Variable in class org.catacomb.serial.xml.XMLToken

dvalue - Variable in class org.textensor.xml.XMLToken

dValueHistory - Variable in class org.catacomb.druid.gui.edit.DruLabelledTextField

DValueHistory - Class in org.catacomb.druid.swing

DValueHistory() - Constructor for class org.catacomb.druid.swing.DValueHistory

DValueHistory(String[]) - Constructor for class org.catacomb.druid.swing.DValueHistory

DVector - Class in org.catacomb.numeric.data

DVector(Object, String) - Constructor for class org.catacomb.numeric.data.DVector

dVectors - Variable in class org.catacomb.numeric.data.NumDataStore

DView - Class in org.catacomb.dataview

DView(File) - Constructor for class org.catacomb.dataview.DView

DViewController - Class in org.catacomb.dataview.gui

DViewController() - Constructor for class org.catacomb.dataview.gui.DViewController

DViewPlotController - Class in org.catacomb.dataview.gui

DViewPlotController() - Constructor for class org.catacomb.dataview.gui.DViewPlotController

DVPanel - Class in org.catacomb.dataview.build

DVPanel() - Constructor for class org.catacomb.dataview.build.DVPanel

dxo - Variable in class org.catacomb.dataview.StringPlotElement

dxydp() - Method in class org.catacomb.graph.gui.Painter

dyo - Variable in class org.catacomb.dataview.StringPlotElement

E

E - Class in org.catacomb.report

E() - Constructor for class org.catacomb.report.E

E - Class in org.textensor.report

E() - Constructor for class org.textensor.report.E

East - Class in org.catacomb.druid.blocks

East() - Constructor for class org.catacomb.druid.blocks.East

echoItem - Variable in class org.catacomb.graph.gui.PickHandler

echoPaint(Graphics2D) - Method in class org.catacomb.graph.gui.BoxSelectionHandler

echoPaint(Graphics2D) - Method in class org.catacomb.graph.gui.Mouse

echoPaint(Graphics2D) - Method in class org.catacomb.graph.gui.MouseHandler

echoPaint(Painter, boolean) - Method in class org.catacomb.graph.gui.PickHandler

econstructor - Variable in class org.catacomb.act.Classdef

EDIT - Static variable in class org.catacomb.graph.arbor.SegmentGraphVE

editable - Variable in class org.catacomb.druid.blocks.TextArea

Editable - Annotation Type in org.catacomb.interlish.annotation

editableConnect(Object, Field, String) - Method in class org.catacomb.druid.build.AnnotationConnector

editCompleted() - Method in class org.catacomb.interlish.content.PrimitiveValue

EditorWindow - Class in org.catacomb.druid.blocks

EditorWindow() - Constructor for class org.catacomb.druid.blocks.EditorWindow

editSelf() - Method in interface org.catacomb.report.SelfEditor

Effect - Class in org.catacomb.druid.gui.edit

Effect() - Constructor for class org.catacomb.druid.gui.edit.Effect

Effect(String) - Constructor for class org.catacomb.druid.gui.edit.Effect

effectiveRate(double, double, double, double, double, double) - Method in class org.textensor.stochdiff.numeric.chem.StimulationTable

effects - Variable in class org.catacomb.druid.blocks.AbstractButton

effects - Variable in class org.catacomb.druid.blocks.Checkbox

effects - Variable in class org.catacomb.druid.blocks.Choice

effects - Variable in class org.catacomb.druid.blocks.LabelledTextField

effects - Variable in class org.catacomb.druid.gui.edit.DruButton

effects - Variable in class org.catacomb.druid.gui.edit.DruCheckbox

effects - Variable in class org.catacomb.druid.gui.edit.DruChoice

effects - Variable in class org.catacomb.druid.gui.edit.DruLabelledTextField

eitherIsBlank(String, String) - Static method in class org.catacomb.interlish.lang.U

electronCharge - Static variable in class org.catacomb.numeric.phys.Phys

Element - Interface in org.catacomb.interlish.structure

Element - Class in org.catacomb.serial.quickxml

Element(String) - Constructor for class org.catacomb.serial.quickxml.Element

Element(String, String) - Constructor for class org.catacomb.serial.quickxml.Element

ElementConnection - Class in org.textensor.stochdiff.numeric.morph

ElementConnection(VolumeElement, VolumeElement, double) - Constructor for class org.textensor.stochdiff.numeric.morph.ElementConnection

ElementConstructor - Class in org.catacomb.serial.om

ElementConstructor() - Constructor for class org.catacomb.serial.om.ElementConstructor

Elemented - Interface in org.catacomb.interlish.structure

ElementExtractor - Class in org.catacomb.serial.quickxml

ElementExtractor() - Constructor for class org.catacomb.serial.quickxml.ElementExtractor

ElementFactory - Interface in org.catacomb.interlish.structure

ElementImporter - Class in org.catacomb.serial

ElementImporter() - Constructor for class org.catacomb.serial.ElementImporter

elementize(Object) - Method in interface org.catacomb.interlish.structure.Elementizer

elementize(Object) - Method in class org.catacomb.serial.OmElementizer

elementize(String) - Method in class org.catacomb.xdoc.TextTagger

elementize2(String) - Method in class org.catacomb.xdoc.TextTagger

Elementizer - Interface in org.catacomb.interlish.structure

elementizers - Static variable in class org.catacomb.xdoc.TextTagger

elementNames - Variable in class org.catacomb.numeric.data.DDSlice

ElementReader - Interface in org.catacomb.interlish.structure

ElementReader - Class in org.textensor.vis

ElementReader(File) - Constructor for class org.textensor.vis.ElementReader

elements - Variable in class org.catacomb.dataview.Plot

elements - Variable in class org.catacomb.serial.om.OmElement

elements - Variable in class org.catacomb.serial.quickxml.Element

elements - Variable in class org.textensor.stochdiff.disc.CurvedVolumeSlice

elements - Variable in class org.textensor.stochdiff.model.SpecieIDList

elements - Variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

elements - Variable in class org.textensor.stochdiff.numeric.morph.VolumeLine

elements - Variable in class org.textensor.stochdiff.numeric.morph.VolumeSlice

ElementSerializer - Class in org.catacomb.serial

ElementSerializer() - Constructor for class org.catacomb.serial.ElementSerializer

elementShape - Variable in class org.textensor.stochdiff.model.Discretization

elementTag - Static variable in class org.catacomb.xdoc.TextTagger

ElementTest - Class in org.catacomb.serial.om

ElementTest() - Constructor for class org.catacomb.serial.om.ElementTest

ElementWriter - Interface in org.catacomb.interlish.structure

ElementXMLReader - Class in org.catacomb.serial

ElementXMLReader() - Constructor for class org.catacomb.serial.ElementXMLReader

eltA - Variable in class org.textensor.stochdiff.numeric.morph.ElementConnection

eltB - Variable in class org.textensor.stochdiff.numeric.morph.ElementConnection

eltfac - Variable in class org.catacomb.serial.SerializationContext

eltGroupIDs - Variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

eltLabels - Variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

eltNbrG - Variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

eltNbrs - Variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

eltregions - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

eltregions - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

eltRegions - Variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

eltregions - Variable in class org.textensor.stochdiff.numeric.StaticCalc

eltregions - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

elts - Variable in class org.textensor.vis.ElementReader

eltstims - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

eltstimshare - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

emphasize(String) - Method in class org.catacomb.xdoc.TextTagger

emphasizers - Static variable in class org.catacomb.xdoc.TextTagger

emptyBody() - Method in class org.catacomb.act.MethodSignature

emptyCA - Static variable in class org.catacomb.interlish.reflect.ObjectAccessor

emptyCA - Static variable in class org.catacomb.interlish.reflect.ReflectionWrapper

emptyClick() - Method in class org.catacomb.druid.xtext.canvas.DataBoard

emptyDrop(Object) - Method in class org.catacomb.druid.xtext.edit.TrashBoard

emptyDrop(Object) - Method in class org.catacomb.druid.xtext.edit.XTypeTree

emptyOA - Static variable in class org.catacomb.interlish.reflect.ObjectAccessor

emptyOA - Static variable in class org.catacomb.interlish.reflect.ReflectionWrapper

EmptyTree - Class in org.catacomb.druid.swing

EmptyTree() - Constructor for class org.catacomb.druid.swing.EmptyTree

enable() - Method in interface org.catacomb.druid.build.GroupContingent

enable() - Method in class org.catacomb.druid.gui.edit.DruButton

enableDrag() - Method in class org.catacomb.druid.gui.edit.DruTreePanel

enableDrag() - Method in class org.catacomb.druid.swing.DTree

enabledState - Variable in class org.catacomb.druid.gui.base.DruAbleEffect

enabledValue - Variable in class org.catacomb.druid.gui.base.DruAbleEffect

enableFocusEvents() - Method in class org.catacomb.druid.swing.DTextField

enableOn - Variable in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

enableOn - Variable in class org.catacomb.druid.gui.edit.DruMenuItem

enableReturnEvents() - Method in class org.catacomb.druid.swing.DTextField

encode(OutputStream) - Method in class org.catacomb.movie.gif.LZWEncoder

encode(String) - Static method in class org.catacomb.util.Base64

Returns the base 64 encoded equivalent of a supplied string.

encodingChar - Static variable in class org.catacomb.util.Base64

end() - Method in class org.catacomb.druid.dialog.ProgressLogDialogController

end() - Method in interface org.catacomb.interlish.report.Logger

end() - Method in class org.catacomb.interlish.report.PrintLogger

end - Variable in class org.textensor.stochdiff.model.InjectionStim

end - Variable in class org.textensor.stochdiff.model.Segment

EndPoint - Class in org.textensor.stochdiff.model

EndPoint() - Constructor for class org.textensor.stochdiff.model.EndPoint

EndPoint(String, double, double, double, double) - Constructor for class org.textensor.stochdiff.model.EndPoint

endPosition(Vector) - Static method in class org.textensor.stochdiff.geom.Geom

ends - Variable in class org.textensor.stochdiff.numeric.chem.StimulationTable

endtime - Variable in class org.textensor.stochdiff.model.SDRun

enforceAspectRatioX() - Method in class org.catacomb.graph.gui.WorldTransform

enforceAspectRatioY() - Method in class org.catacomb.graph.gui.WorldTransform

enlarge(double) - Method in class org.catacomb.datalish.Box

ensureCovers(double[], double[]) - Method in class org.catacomb.graph.gui.WorldCanvas

ensureCovers(double, double, double, double) - Method in class org.catacomb.graph.gui.WorldTransform

ensureHasSelection() - Method in class org.catacomb.druid.gui.edit.DruListPanel

ensureHasSelection() - Method in class org.catacomb.druid.swing.DList

ensureInRange() - Method in class org.catacomb.druid.swing.DFloatSlider

ensureNonEmpty() - Method in class org.catacomb.graph.arbor.SegmentGraph

ensureVisible(TreeNode) - Method in class org.catacomb.druid.gui.edit.DruCheckboxTreePanel

ensureVisible(String) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

ensureVisible(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

ensureVisible(Object[]) - Method in class org.catacomb.druid.swing.DCheckboxTree

ensureVisible(String) - Method in class org.catacomb.druid.swing.DTree

EnumOption - Class in org.catacomb.act

EnumOption(String, int) - Constructor for class org.catacomb.act.EnumOption

enumOptions - Variable in class org.catacomb.act.FieldSignature

Env - Class in org.catacomb.interlish.service

Env() - Constructor for class org.catacomb.interlish.service.Env

environmentNode - Variable in class org.catacomb.numeric.difnet.model.BasicNetStructure

EOF - Static variable in class org.catacomb.movie.gif.LZWEncoder

EOFCode - Variable in class org.catacomb.movie.gif.LZWEncoder

equals(Region) - Method in class org.catacomb.druid.swing.dnd.Region

equals(Object) - Method in class org.catacomb.interlish.content.ConnectionFlavor

equals(Object) - Method in class org.catacomb.util.WSString

equiv_max - Variable in class org.catacomb.util.Diff

1 more than the maximum equivalence value used for this or its sibling file.

equivCount() - Method in class org.catacomb.util.Diff.file_data

Return equiv_count[I] as the number of lines in this file that fall in equivalence class I.

equivs - Variable in class org.catacomb.util.Diff.file_data

Vector, indexed by line number, containing an equivalence code for each line.

err(String) - Static method in class org.catacomb.interlish.reflect.Narrower

err(String) - Method in class org.catacomb.serial.xml.XMLReader

err(String) - Method in class org.catacomb.serial.xml.XMLTokenizer

err(String) - Static method in class org.catacomb.serial.xml.XMLWriter

err(String) - Static method in class org.textensor.xml.Narrower

err(String) - Method in class org.textensor.xml.XMLReader

err(String) - Method in class org.textensor.xml.XMLTokenizer

err(String) - Static method in class org.textensor.xml.XMLWriter

ERROR - Static variable in interface org.catacomb.interlish.structure.InfoMessage

ERROR - Static variable in interface org.catacomb.interlish.structure.StateProcess

ERROR - Static variable in class org.catacomb.report.E

error(String) - Static method in class org.catacomb.report.E

error(String, int) - Static method in class org.catacomb.report.E

error(String) - Static method in class org.textensor.report.E

errorIcon - Variable in class org.catacomb.druid.swing.DListProgressRenderer

errorIcon() - Static method in class org.catacomb.graph.drawing.VectorIcon

errorMsg(String, String) - Static method in class org.catacomb.druid.guimodel.Log

errorMsg(String, String) - Static method in class org.catacomb.interlish.report.UserLog

esubConstructor - Variable in class org.catacomb.act.Classdef

ETCHED_DOWN - Static variable in class org.catacomb.druid.swing.BorderUtil

ETCHED_DOWN - Static variable in class org.catacomb.druid.swing.RolloverEffect

ETCHED_DOWN - Static variable in class org.catacomb.graph.gui.RolloverEffect

ETCHED_UP - Static variable in class org.catacomb.druid.swing.BorderUtil

ETCHED_UP - Static variable in class org.catacomb.druid.swing.RolloverEffect

ETCHED_UP - Static variable in class org.catacomb.graph.gui.RolloverEffect

ev1vec(int) - Method in class org.catacomb.numeric.math.Matrix

ev1vec(int) - Method in class org.textensor.stochdiff.numeric.math.Matrix

evalLims() - Method in class org.catacomb.dataview.formats.TableDataHandler

Event - Interface in org.catacomb.be

events - Variable in class org.catacomb.datalish.SceneConfig

events - Variable in class org.catacomb.datalish.SpriteEvents

EventSequence - Class in org.catacomb.numeric.data

EventSequence(String) - Constructor for class org.catacomb.numeric.data.EventSequence

EVTSEQ - Static variable in class org.catacomb.graph.gui.DataView

evtSeqHM - Variable in class org.catacomb.numeric.data.NumDataStore

evtSequences - Variable in class org.catacomb.numeric.data.NumDataStore

exclude - Variable in class org.catacomb.util.StringTree

execute(Object) - Method in interface org.catacomb.util.UnaryPredicate

exit() - Method in class org.catacomb.dataview.DataviewController

exit() - Method in class org.catacomb.dataview.gui.CCVizController

exit() - Method in class org.catacomb.dataview.gui.DViewController

expand() - Method in class org.catacomb.druid.gui.base.DruCollapsiblePanel

expand() - Method in class org.catacomb.druid.xtext.data.XType

expand(double) - Method in class org.catacomb.graph.drawing.Shape

expanded - Variable in class org.catacomb.druid.xtext.data.XType

ExpandingTextArea - Class in org.catacomb.druid.blocks

ExpandingTextArea() - Constructor for class org.catacomb.druid.blocks.ExpandingTextArea

ExpandingTextAreaController - Class in org.catacomb.druid.gui.edit

ExpandingTextAreaController(DTextArea) - Constructor for class org.catacomb.druid.gui.edit.ExpandingTextAreaController

expandPath(Object[]) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

expIcon - Variable in class org.catacomb.druid.swing.ui.DruidTreeUI

expOf(double) - Method in class org.catacomb.numeric.math.Matrix

expOf(double) - Method in class org.textensor.stochdiff.numeric.math.Matrix

export(Object, File) - Static method in class org.catacomb.dataview.read.Exporter

export() - Method in class org.catacomb.druid.swing.DFloatSlider

export() - Method in class org.catacomb.druid.swing.DSimpleSlider

export() - Method in class org.catacomb.druid.swing.DSlider

exportAsString() - Method in class org.catacomb.interlish.content.Polypoint

exportColorRange() - Method in class org.catacomb.dataview.gui.Mesh2plusTimeController

exportData() - Method in class org.catacomb.dataview.DataviewController

Exporter - Class in org.catacomb.dataview.read

Exporter() - Constructor for class org.catacomb.dataview.read.Exporter

exportFocus(String) - Method in class org.catacomb.interlish.report.Focus

exportFromText() - Method in class org.catacomb.druid.swing.DFloat

exportFromText() - Method in class org.catacomb.druid.swing.DInt

exportInfo() - Method in class org.catacomb.druid.gui.base.DruPanel

exportMode(String, String) - Method in class org.catacomb.druid.chunk.MouseModeController

exportRunish(double) - Method in class org.catacomb.graph.drawing.Shape

exports - Variable in class org.catacomb.interlish.interact.CodgerTask

exportStatus(String) - Method in class org.catacomb.interlish.report.Status

exportStringValueContent() - Method in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

exportStringValueContent() - Method in class org.catacomb.druid.gui.edit.DruHTMLPanel

exposedArea - Variable in class org.textensor.stochdiff.numeric.morph.VolumeElement

exposedAreas - Variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

extend(String) - Method in class org.catacomb.druid.build.FlatGUIPath

extend(String) - Method in class org.catacomb.druid.build.GUIPath

extendBArray(boolean[]) - Static method in class org.catacomb.datalish.array.Array

extendDArray(double[]) - Static method in class org.catacomb.datalish.array.Array

extendDArray(double[], int, int) - Static method in class org.catacomb.datalish.array.Array

extendDDArray(double[][]) - Static method in class org.catacomb.datalish.array.Array

extendIArray(int[]) - Static method in class org.catacomb.datalish.array.Array

extendIArray(int[], int, int) - Static method in class org.catacomb.datalish.array.Array

extendIIArray(int[][]) - Static method in class org.catacomb.datalish.array.Array

extendNetMapLinkArray(NetMapLink[]) - Method in class org.catacomb.numeric.difnet.calc.OrderedNetMap

extendSArray(String[]) - Static method in class org.catacomb.datalish.array.Array

extendsName - Variable in class org.catacomb.act.Classdef

extendTo(Position) - Method in class org.catacomb.datalish.Box

extendTo(Box) - Method in class org.catacomb.datalish.Box

extendTo(double[], double[]) - Method in class org.catacomb.datalish.Box

extendTo(double, double) - Method in class org.catacomb.datalish.Box

extendXTo(double) - Method in class org.catacomb.datalish.Box

extendYTo(double) - Method in class org.catacomb.datalish.Box

extension - Variable in class org.catacomb.druid.manifest.DecFile

extensions - Variable in class org.catacomb.druid.swing.ExtFileFilter

ExternInstantiator - Class in org.catacomb.interlish.reflect

ExternInstantiator() - Constructor for class org.catacomb.interlish.reflect.ExternInstantiator

externInstantiator - Static variable in class org.catacomb.interlish.service.ResourceAccess

ExternUser - Interface in org.catacomb.interlish.structure

ExternValue - Class in org.catacomb.interlish.content

ExternValue() - Constructor for class org.catacomb.interlish.content.ExternValue

ExternValue(Object) - Constructor for class org.catacomb.interlish.content.ExternValue

ExtFileFilter - Class in org.catacomb.druid.swing

ExtFileFilter(String, String) - Constructor for class org.catacomb.druid.swing.ExtFileFilter

extractAttributes(String, String, String[]) - Method in class org.catacomb.xdoc.TextTagger

extractAttributesAsElements(String, String, String[]) - Method in class org.catacomb.xdoc.TextTagger

extractCDATAs(String) - Method in class org.catacomb.serial.xml.XMLTokenizer

extractCDATAs(String) - Method in class org.textensor.xml.XMLTokenizer

extractColor() - Method in class org.catacomb.dataview.build.Displayable

extractDoubleField(String, String) - Static method in class org.catacomb.util.StringUtil

extractFrom(String) - Method in class org.catacomb.numeric.data.DataSlice

extractGrid() - Method in class org.textensor.stochdiff.numeric.BaseCalc

extractJarResources(Object, String, File) - Static method in class org.catacomb.interlish.util.JUtil

extractMissingResources(String, File) - Static method in class org.catacomb.interlish.util.JUtil

extractOutputScheme(ReactionTable) - Method in class org.textensor.stochdiff.numeric.BaseCalc

extractQuotedDoubleField(String, String) - Static method in class org.catacomb.util.StringUtil

extractResources(Logger, String, File) - Static method in class org.catacomb.interlish.util.JUtil

extractTables() - Method in class org.textensor.stochdiff.numeric.BaseCalc

exval - Variable in class org.catacomb.interlish.content.ExternValue

F

FACTORY - Static variable in class org.catacomb.interlish.reflect.ObjectBuilder

Factory - Interface in org.catacomb.interlish.structure

faster() - Method in class org.catacomb.dataview.FrameController

faster() - Method in class org.catacomb.dataview.gui.FramePlayerController

faster() - Method in class org.catacomb.druid.chunk.MoviePlayController

faster() - Method in class org.catacomb.graph.gui.MovieDisplay

faster() - Method in interface org.catacomb.interlish.structure.MovieOperator

FATAL - Static variable in interface org.catacomb.interlish.structure.InfoMessage

FATAL - Static variable in class org.catacomb.report.E

fatalError(String) - Static method in class org.catacomb.report.E

fatalError(String) - Static method in class org.textensor.report.E

fCross(double, double, double, double, double, double, double, double) - Static method in class org.catacomb.geom.Geom

fcTrans - Variable in class org.textensor.vis.SceneGraphViewer

fdestdir - Variable in class org.catacomb.dataview.BatchImageMaker

fdiag - Variable in class org.catacomb.util.Diff

fdiagoff - Variable in class org.catacomb.util.Diff

fdiff - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

fdiff - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

fdiff - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

felt - Variable in class org.catacomb.serial.quickxml.XMLFileElement

fgColor - Variable in class org.catacomb.druid.gui.base.DruPanel

fgColor - Variable in class org.catacomb.graph.gui.BaseCanvas

field - Variable in class org.catacomb.numeric.data.StackSlice

fieldName - Variable in class org.catacomb.numeric.data.StackSlice

fieldNames - Variable in class org.catacomb.druid.xtext.data.XType

fieldOrientation - Variable in class org.catacomb.druid.swing.split.SplitterLayout

fields - Variable in class org.catacomb.act.Classdef

fields - Variable in class org.catacomb.druid.xtext.data.XItem

fields - Variable in class org.catacomb.druid.xtext.data.XType

FieldSignature - Class in org.catacomb.act

FieldSignature(String, String) - Constructor for class org.catacomb.act.FieldSignature

FieldState - Class in org.catacomb.serial.state

FieldState(String, String) - Constructor for class org.catacomb.serial.state.FieldState

FieldValueProvider - Interface in org.catacomb.interlish.structure

file - Variable in class org.catacomb.dataview.build.DataSource

file - Variable in class org.catacomb.dataview.formats.MeshDataReader

file - Variable in class org.catacomb.dataview.model.Plottable

file - Variable in class org.catacomb.graph.gui.MovieDisplay.MDThreadRunner

file - Variable in class org.catacomb.serial.om.OmFileReader

file - Variable in class org.catacomb.serial.om.OmFileWriter

file - Variable in class org.catacomb.util.FileRef

file0 - Variable in class org.catacomb.util.DiffPrint.Base

Set to the lines of the files being compared.

file1 - Variable in class org.catacomb.util.DiffPrint.Base

Set to the lines of the files being compared.

FILE_SYSTEM - Static variable in class org.catacomb.druid.manifest.DecFile

FileAccumulator - Class in org.catacomb.util

FileAccumulator(File) - Constructor for class org.catacomb.util.FileAccumulator

fileAway(String) - Method in class org.catacomb.druid.util.tree.RelationNode

FileChooser - Class in org.catacomb.druid.util

FileChooser() - Constructor for class org.catacomb.druid.util.FileChooser

fileHS - Variable in class org.catacomb.util.FileAccumulator

FileImportContext - Class in org.catacomb.dataview.read

FileImportContext(File) - Constructor for class org.catacomb.dataview.read.FileImportContext

FileLister - Class in org.catacomb.util

FileLister() - Constructor for class org.catacomb.util.FileLister

filename - Variable in class org.textensor.stochdiff.model.OutputSet

filename_list - Variable in class org.textensor.stochdiff.numeric.BaseCalc

filePath - Variable in class org.catacomb.graph.drawing.IconImage

FileRef - Class in org.catacomb.util

FileRef(File) - Constructor for class org.catacomb.util.FileRef

fileRoot(String) - Static method in class org.catacomb.util.PathUtil

files - Variable in class org.catacomb.druid.manifest.DecManifest

files - Variable in class org.catacomb.util.DirRef

fileSep - Static variable in class org.catacomb.interlish.util.JUtil

FileSourcable - Interface in org.catacomb.be

fileStatus(String) - Method in interface org.catacomb.interlish.structure.NameFilter

FileUtil - Class in org.catacomb.util

FileUtil() - Constructor for class org.catacomb.util.FileUtil

FileUtil - Class in org.textensor.util

FileUtil() - Constructor for class org.textensor.util.FileUtil

filevec - Variable in class org.catacomb.util.Diff

fill3DCircle(double, double, double, double) - Method in class org.catacomb.graph.gui.Painter

fill3DOval(double, double, double, int, int) - Method in class org.catacomb.graph.gui.Painter

fill3DSegment(double, double, double, double, double, double, double, double) - Method in class org.catacomb.graph.gui.Painter

fillBackground(Color) - Method in class org.catacomb.graph.gui.Painter

fillCenteredBox(Position, int, int) - Method in class org.catacomb.graph.gui.Painter

fillCenteredOval(double, double, double, double, Color) - Method in class org.catacomb.graph.gui.Painter

fillCenteredOval(Position, int) - Method in class org.catacomb.graph.gui.Painter

fillCenteredRectangle(double, double, double, double) - Method in class org.catacomb.graph.gui.Painter

fillCircle(double, double, double) - Method in class org.catacomb.graph.gui.Painter

fillCircle(Position, double) - Method in class org.catacomb.graph.gui.Painter

fillColor - Variable in class org.catacomb.datalish.SpritePart

fillColor - Variable in class org.catacomb.graph.drawing.FixedDrawingComponent

fillColor - Variable in class org.catacomb.graph.drawing.Shape

fillColor - Variable in class org.catacomb.graph.gui.SimpleVectorSprite

fillColor - Variable in class org.catacomb.interlish.content.RShape

fillColor - Variable in class org.catacomb.numeric.data.XYVectorSprite

filled() - Method in class org.catacomb.datalish.SpritePart

FILLED - Static variable in class org.catacomb.graph.drawing.FixedDrawingComponent

FILLED - Static variable in class org.catacomb.interlish.content.Polypoint

FILLED - Static variable in class org.catacomb.interlish.content.RShape

filledPolygonImage(double[], double[], int, Color, double, double, double) - Static method in class org.catacomb.graph.gui.Iconizer

FillGuage - Class in org.catacomb.druid.blocks

FillGuage() - Constructor for class org.catacomb.druid.blocks.FillGuage

fillIntCircle(double, double, int) - Method in class org.catacomb.graph.gui.Painter

fillIntRectangle(int, int, int, int, Color) - Method in class org.catacomb.graph.gui.Painter

fillOutline(double, double, double, double, double, double) - Method in class org.catacomb.graph.gui.Painter

fillPixelRectangle(int, int, Color, int) - Method in class org.catacomb.graph.gui.Painter

fillPolygon(double[], double[], int) - Method in class org.catacomb.graph.gui.Painter

fillPolygon(double[], double[], int, Color) - Method in class org.catacomb.graph.gui.Painter

fillPolygon(double[], double[]) - Method in class org.catacomb.graph.gui.Painter

fillPolygon(Polypoint, int, int) - Method in class org.catacomb.graph.gui.Painter

fillRectangle(double, double, Color, int) - Method in class org.catacomb.graph.gui.Painter

fillRectangle(double, double, double, double, Color) - Method in class org.catacomb.graph.gui.Painter

filterDiscards(byte[]) - Method in class org.catacomb.util.Diff.file_data

Don't really discard the provisional lines except when they occur in a run of discardables, with nonprovisionals at the beginning and end.

filters - Variable in class org.catacomb.druid.swing.DFileChooser

find_function(Object[], int) - Method in class org.catacomb.util.DiffPrint.ContextPrint

If function_regexp defined, search for start of function.

findBracket(double[], double) - Static method in class org.textensor.util.ArrayUtil

findClosest(Color) - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Returns index of palette color closest to c

findConfig(File) - Method in class org.catacomb.dataview.gui.DViewController

findNearest(TreePoint, TreePoint) - Method in class org.textensor.stochdiff.disc.SegmentSlicer

findPath(File, String) - Static method in class org.catacomb.util.FileUtil

findPath(File, String) - Static method in class org.textensor.util.FileUtil

finish() - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Flushes any pending data and closes output file.

FINISHED - Static variable in interface org.catacomb.interlish.structure.StateProcess

fireTreeStructureChanged(Object) - Method in class org.catacomb.druid.swing.DTreeModel

first - Variable in class org.catacomb.druid.gui.base.DruBoxPanel

first - Variable in class org.catacomb.numeric.data.DataSetArray

first0 - Variable in class org.catacomb.util.DiffPrint.Base

first1 - Variable in class org.catacomb.util.DiffPrint.Base

firstElement() - Method in class org.catacomb.numeric.data.DataSetArray

firstFrame - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

firstRegion - Variable in class org.textensor.stochdiff.numeric.morph.TreePoint

firstTextBlock() - Method in class org.catacomb.druid.xtext.canvas.TextBoard

FitConstraints - Class in org.textensor.stochdiff.model

FitConstraints() - Constructor for class org.textensor.stochdiff.model.FitConstraints

fitConstraints - Variable in class org.textensor.stochdiff.model.InitialConditions

fix() - Method in class org.catacomb.dataview.formats.TableDataReader

fix() - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

fixate() - Method in class org.catacomb.numeric.function.HoldLastScalarFunction

fixcon - Variable in class org.textensor.stochdiff.numeric.morph.VolumeElement

fixed - Variable in class org.catacomb.numeric.difnet.calc.NetMapNode

fixed - Variable in class org.catacomb.numeric.difnet.model.BasicStructureNode

FIXED - Static variable in class org.textensor.stochdiff.disc.SegmentSlicer

FixedDrawing - Class in org.catacomb.graph.drawing

FixedDrawing() - Constructor for class org.catacomb.graph.drawing.FixedDrawing

FixedDrawingComponent - Class in org.catacomb.graph.drawing

FixedDrawingComponent() - Constructor for class org.catacomb.graph.drawing.FixedDrawingComponent

FixedPStepGenerator - Class in org.textensor.stochdiff.numeric.stochastic

FixedPStepGenerator(double, BaseCalc.distribution_t) - Constructor for class org.textensor.stochdiff.numeric.stochastic.FixedPStepGenerator

fixedSize - Variable in class org.catacomb.druid.swing.DPopLabel

fixedStepDt - Variable in class org.textensor.stochdiff.model.SDRun

FixedValueScalarFunction - Class in org.catacomb.numeric.function

FixedValueScalarFunction(double) - Constructor for class org.catacomb.numeric.function.FixedValueScalarFunction

fixRanges() - Method in class org.catacomb.graph.gui.WorldCanvas

fixRanges() - Method in class org.catacomb.graph.gui.WorldTransform

flagChange() - Method in class org.catacomb.druid.swing.DTextArea

flagChange() - Method in class org.catacomb.druid.swing.DTextField

flagPointMoved() - Method in class org.catacomb.graph.drawing.Shape

FlatDataStore - Interface in org.catacomb.interlish.structure

FlatGUIPath - Class in org.catacomb.druid.build

FlatGUIPath() - Constructor for class org.catacomb.druid.build.FlatGUIPath

FlatGUIPath(String) - Constructor for class org.catacomb.druid.build.FlatGUIPath

flatten() - Method in class org.catacomb.numeric.math.Matrix

flatten() - Method in class org.textensor.stochdiff.numeric.math.Matrix

flatTreeify(String[], String) - Static method in class org.catacomb.util.StringUtil

flavor - Variable in class org.catacomb.druid.blocks.CheckboxMenuItem

flavor - Variable in class org.catacomb.druid.blocks.CheckboxTree

flavor - Variable in class org.catacomb.druid.blocks.MenuItem

flavor - Variable in class org.catacomb.druid.blocks.TreePanel

flavor - Variable in class org.catacomb.graph.arbor.SGAttachmentPoint

flavor - Variable in class org.catacomb.interlish.content.ConnectionFlavor

flavor - Static variable in interface org.catacomb.interlish.structure.InfoWorker

Flavored - Interface in org.catacomb.interlish.structure

flavors - Variable in class org.catacomb.druid.swing.dnd.DdndTransferable

flimit(double) - Method in class org.textensor.vis.SceneGraphBuilder

flip - Variable in class org.catacomb.numeric.difnet.calc.NetMapLink

flip - Variable in class org.catacomb.numeric.difnet.model.BasicStructureLink

flip() - Method in class org.textensor.stochdiff.numeric.morph.TriangleStrip

FloatBoxPanel - Class in org.catacomb.druid.blocks

FloatBoxPanel() - Constructor for class org.catacomb.druid.blocks.FloatBoxPanel

floatDeviceX(double[]) - Method in class org.catacomb.graph.gui.WorldTransform

floatDeviceY(double[]) - Method in class org.catacomb.graph.gui.WorldTransform

FloatRow - Class in org.catacomb.numeric.data

FloatRow(double[]) - Constructor for class org.catacomb.numeric.data.FloatRow

FloatRow(String) - Constructor for class org.catacomb.numeric.data.FloatRow

FloatScalar - Class in org.catacomb.numeric.data

FloatScalar(String, String) - Constructor for class org.catacomb.numeric.data.FloatScalar

FloatScalar(String, double) - Constructor for class org.catacomb.numeric.data.FloatScalar

FloatScalar(FloatVector) - Constructor for class org.catacomb.numeric.data.FloatScalar

FloatSlider - Class in org.catacomb.druid.blocks

FloatSlider() - Constructor for class org.catacomb.druid.blocks.FloatSlider

FloatValued - Interface in org.textensor.stochdiff.inter

FloatVector - Class in org.catacomb.numeric.data

FloatVector(String, double[]) - Constructor for class org.catacomb.numeric.data.FloatVector

FloatVector(String, String) - Constructor for class org.catacomb.numeric.data.FloatVector

FlowPanel - Class in org.catacomb.druid.blocks

FlowPanel() - Constructor for class org.catacomb.druid.blocks.FlowPanel

flush() - Method in class org.catacomb.movie.gif.ByteAccumulator

flush_char(OutputStream) - Method in class org.catacomb.movie.gif.LZWEncoder

flux - Variable in class org.catacomb.numeric.difnet.calc.NetMapNode

FLUX - Static variable in interface org.catacomb.numeric.difnet.Stimulus

fmax - Variable in class org.catacomb.druid.gui.edit.DruProgressReport

fmax - Variable in class org.catacomb.interlish.report.PrintProgressReport

fmin - Variable in class org.catacomb.druid.gui.edit.DruProgressReport

fmin - Variable in class org.catacomb.interlish.report.PrintProgressReport

fnew - Variable in class org.catacomb.numeric.function.AR1Noise

fnmsOut - Variable in class org.textensor.stochdiff.numeric.BaseCalc

fnroot - Variable in class org.textensor.stochdiff.ResultWriter

Focus - Class in org.catacomb.interlish.report

Focus() - Constructor for class org.catacomb.interlish.report.Focus

focusAction - Variable in class org.catacomb.druid.blocks.LabelledTextField

focusAction - Variable in class org.catacomb.druid.gui.edit.DruLabelledTextField

FocusActor - Interface in org.catacomb.druid.event

FocusBoard - Class in org.catacomb.druid.market

FocusBoard() - Constructor for class org.catacomb.druid.market.FocusBoard

focusChanged(Object) - Method in interface org.catacomb.interlish.structure.FocusListener

focusGained() - Method in interface org.catacomb.druid.event.FocusActor

focusGained() - Method in class org.catacomb.druid.gui.edit.DruExpandingTextArea

focusGained() - Method in class org.catacomb.druid.gui.edit.DruLabelledTextField

focusGained() - Method in class org.catacomb.druid.gui.edit.DruTextArea

focusGained() - Method in class org.catacomb.druid.gui.edit.DruTextField

focusGained() - Method in class org.catacomb.druid.swing.DFloat

focusGained() - Method in class org.catacomb.druid.swing.DInt

focusGained(FocusEvent) - Method in class org.catacomb.druid.swing.dnd.RegionBoard

focusGained(FocusEvent) - Method in class org.catacomb.druid.swing.DTextArea

focusGained(FocusEvent) - Method in class org.catacomb.druid.swing.DTextField

FocusListener - Interface in org.catacomb.interlish.structure

focusLost() - Method in interface org.catacomb.druid.event.FocusActor

focusLost() - Method in class org.catacomb.druid.gui.edit.DruExpandingTextArea

focusLost() - Method in class org.catacomb.druid.gui.edit.DruLabelledTextField

focusLost() - Method in class org.catacomb.druid.gui.edit.DruTextArea

focusLost() - Method in class org.catacomb.druid.gui.edit.DruTextField

focusLost() - Method in class org.catacomb.druid.swing.DFloat

focusLost() - Method in class org.catacomb.druid.swing.DInt

focusLost(FocusEvent) - Method in class org.catacomb.druid.swing.dnd.RegionBoard

focusLost(FocusEvent) - Method in class org.catacomb.druid.swing.DTextArea

focusLost(FocusEvent) - Method in class org.catacomb.druid.swing.DTextField

FocusSource - Interface in org.catacomb.interlish.structure

folderDialogController - Static variable in class org.catacomb.druid.dialog.Dialoguer

FolderDialogController - Class in org.catacomb.druid.dialog

FolderDialogController() - Constructor for class org.catacomb.druid.dialog.FolderDialogController

folderStatus(String) - Method in interface org.catacomb.interlish.structure.NameFilter

follow(URL) - Method in class org.catacomb.druid.gui.base.DruLinkHandler

follow(AboveBelowSplitPanel) - Method in class org.catacomb.graph.gui.AboveBelowSplitPanel

follow(String) - Method in interface org.catacomb.interlish.structure.LinkHandler

follow(URL) - Method in interface org.catacomb.interlish.structure.LinkHandler

follower - Variable in class org.catacomb.graph.gui.AboveBelowSplitPanel

fontColor - Variable in class org.catacomb.druid.xtext.base.Guise

fontColor - Variable in class org.catacomb.druid.xtext.edit.GuiseController

fontFamily - Variable in class org.catacomb.druid.xtext.base.Guise

fontFamily - Variable in class org.catacomb.druid.xtext.edit.GuiseController

fontHM - Variable in class org.catacomb.druid.xtext.canvas.FontStore

fontSize - Variable in class org.catacomb.druid.blocks.TextArea

fontSize - Variable in class org.catacomb.druid.xtext.base.Guise

fontSize - Variable in class org.catacomb.druid.xtext.edit.GuiseController

fontStore - Variable in class org.catacomb.druid.swing.DDropCanvas

fontStore - Variable in class org.catacomb.druid.xtext.canvas.DataBoard

FontStore - Class in org.catacomb.druid.xtext.canvas

FontStore() - Constructor for class org.catacomb.druid.xtext.canvas.FontStore

fontStore - Variable in class org.catacomb.druid.xtext.canvas.TextBoard

fontStyle - Variable in class org.catacomb.druid.xtext.base.Guise

fontStyle - Variable in class org.catacomb.druid.xtext.edit.GuiseController

fontweight - Variable in class org.catacomb.druid.blocks.DashedLine

fontWeight - Variable in class org.catacomb.druid.blocks.Label

forceExit() - Method in class org.catacomb.druid.load.DruidAppBase

forceExit() - Static method in class org.catacomb.interlish.service.AppPersist

forceExit() - Method in interface org.catacomb.interlish.service.AppPersistProvider

forceFullMatrix() - Method in class org.catacomb.numeric.difnet.model.BasicNetState

forceFullMatrix() - Method in interface org.catacomb.numeric.difnet.NetState

foreground - Variable in class org.catacomb.interlish.content.ColorSet

format(double) - Static method in class org.catacomb.serial.SerialUtil

format(double) - Static method in class org.catacomb.util.Formatter

format(double, double) - Static method in class org.catacomb.util.Formatter

format(double, int) - Static method in class org.catacomb.util.NumUtil

format(Double, int) - Static method in class org.catacomb.util.NumUtil

formatDouble(double) - Method in class org.catacomb.serial.om.OmWriter

Formatter - Class in org.catacomb.util

Formatter() - Constructor for class org.catacomb.util.Formatter

FormatTest - Class in org.catacomb.dataview.demo

FormatTest() - Constructor for class org.catacomb.dataview.demo.FormatTest

FormPanel - Class in org.catacomb.druid.blocks

FormPanel() - Constructor for class org.catacomb.druid.blocks.FormPanel

forName(String) - Method in interface org.catacomb.be.Instantiator

forName(String, boolean) - Method in interface org.catacomb.be.Instantiator

forName(String) - Method in class org.catacomb.interlish.reflect.ClassInstantiator

forName(String, boolean) - Method in class org.catacomb.interlish.reflect.ClassInstantiator

ForwardEulerPoolCalc - Class in org.textensor.stochdiff.numeric.pool

ForwardEulerPoolCalc(SDRun) - Constructor for class org.textensor.stochdiff.numeric.pool.ForwardEulerPoolCalc

ForwardExponentialPoolCalc - Class in org.textensor.stochdiff.numeric.pool

ForwardExponentialPoolCalc(SDRun) - Constructor for class org.textensor.stochdiff.numeric.pool.ForwardExponentialPoolCalc

forwardRate - Variable in class org.textensor.stochdiff.model.Reaction

forwardScript - Static variable in class org.catacomb.util.Diff

Standard ScriptBuilders.

fractAlongParent - Variable in class org.textensor.stochdiff.neuroml.cable

fraction - Variable in class org.catacomb.druid.gui.edit.DruProgressReport

frame - Variable in class org.catacomb.druid.blocks.Application

frame - Variable in class org.catacomb.druid.blocks.EditorWindow

Frame - Class in org.catacomb.druid.blocks

Frame() - Constructor for class org.catacomb.druid.blocks.Frame

Frame(String, MenuBar, Panel) - Constructor for class org.catacomb.druid.blocks.Frame

frame - Variable in class org.catacomb.druid.util.ctrl.WindowCloser

frame - Variable in class org.textensor.vis.CCViz3D

frame - Variable in class org.textensor.vis.Icing3DViewer

FRAME_NORMAL - Static variable in class org.catacomb.druid.swing.DFrame

frameChangedTo(int, String) - Method in class org.catacomb.druid.chunk.MoviePlayController

frameChangedTo(int, String) - Method in interface org.catacomb.interlish.structure.MovieStateDisplay

frameController - Variable in class org.catacomb.dataview.DataviewController

FrameController - Class in org.catacomb.dataview

FrameController(String, String) - Constructor for class org.catacomb.dataview.FrameController

frameController - Variable in class org.catacomb.dataview.gui.FramePlayer

frameController - Variable in class org.catacomb.dataview.gui.Mesh2plusTimeController

frameDisplay - Variable in class org.catacomb.dataview.gui.FramePlayerController

FrameDisplay - Interface in org.catacomb.interlish.structure

frameIdx - Variable in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

framePlayer - Variable in class org.catacomb.dataview.FrameController

FramePlayer - Class in org.catacomb.dataview.gui

FramePlayer(FramePlayerController) - Constructor for class org.catacomb.dataview.gui.FramePlayer

framePlayer - Variable in class org.catacomb.dataview.gui.FramePlayerController

FramePlayerController - Class in org.catacomb.dataview.gui

FramePlayerController() - Constructor for class org.catacomb.dataview.gui.FramePlayerController

FRAMES2D - Static variable in interface org.catacomb.dataview.formats.DataHandler

frameSelector - Variable in class org.catacomb.dataview.build.Dataview

FrameSelector - Class in org.catacomb.dataview.build

FrameSelector() - Constructor for class org.catacomb.dataview.build.FrameSelector

frameShowable - Variable in class org.catacomb.druid.build.Druid

FrameShowable - Interface in org.catacomb.interlish.structure

frameSlider - Variable in class org.catacomb.dataview.FrameController

frameSlider - Variable in class org.catacomb.dataview.gui.FramePlayerController

frameToBox(Box) - Method in class org.catacomb.graph.gui.WorldCanvas

frameToPaint - Variable in class org.catacomb.graph.gui.SpriteMoviePainter

frameValues - Variable in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

frameValues - Variable in class org.catacomb.dataview.formats.MeshDataReader

free - Variable in class org.catacomb.serial.quickxml.Element

free_ent - Variable in class org.catacomb.movie.gif.LZWEncoder

freq - Variable in class org.catacomb.movie.gif.NeuQuant

from - Variable in class org.catacomb.druid.blocks.Choice

from - Variable in class org.catacomb.druid.blocks.RadioButtons

from_A(double) - Static method in class org.catacomb.numeric.phys.Units

from_Celcius(double) - Static method in class org.catacomb.numeric.phys.Units

from_degrees(double) - Static method in class org.catacomb.numeric.phys.Units

from_electrons(double) - Static method in class org.catacomb.numeric.phys.Units

from_microFpercm2(double) - Static method in class org.catacomb.numeric.phys.Units

from_micron(double) - Static method in class org.catacomb.numeric.phys.Units

from_micron2(double) - Static method in class org.catacomb.numeric.phys.Units

from_microS(double) - Static method in class org.catacomb.numeric.phys.Units

from_ms(double) - Static method in class org.catacomb.numeric.phys.Units

from_mV(double) - Static method in class org.catacomb.numeric.phys.Units

from_nA(double) - Static method in class org.catacomb.numeric.phys.Units

from_nm(double) - Static method in class org.catacomb.numeric.phys.Units

from_nS(double) - Static method in class org.catacomb.numeric.phys.Units

from_Ohmcm(double) - Static method in class org.catacomb.numeric.phys.Units

from_pA(double) - Static method in class org.catacomb.numeric.phys.Units

from_perV(double) - Static method in class org.catacomb.numeric.phys.Units

from_pS(double) - Static method in class org.catacomb.numeric.phys.Units

from_V(double) - Static method in class org.catacomb.numeric.phys.Units

fromLin(double) - Method in class org.catacomb.druid.swing.DFloatSlider

fromScaledPoints(double[], double, double) - Method in class org.catacomb.graph.drawing.GenericShape

fromTo(Position, Position) - Static method in class org.catacomb.be.Direction

fromToVector(Position, Position) - Static method in class org.textensor.stochdiff.geom.Geom

fromZRotation(Vector) - Static method in class org.textensor.stochdiff.geom.Geom

fSharedExit - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

fSharedExit - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

fsrc - Variable in class org.catacomb.dataview.BatchImageMaker

fsrc - Variable in class org.textensor.vis.ElementReader

FSRunnable - Interface in org.catacomb.interlish.structure

FUImportContext - Class in org.catacomb.dataview.read

FUImportContext() - Constructor for class org.catacomb.dataview.read.FUImportContext

FULL - Static variable in class org.catacomb.graph.gui.MouseHandler

fullClassname - Variable in class org.catacomb.interlish.reflect.ReflectionWrapper

fullIDToSource - Variable in class org.catacomb.druid.load.XMLStore

fullInit(BaseCalc.distribution_t) - Method in class org.textensor.stochdiff.numeric.stochastic.InterpolatingStepGenerator

fullNetDiffuse(OrderedNetMap, double) - Method in class org.catacomb.numeric.difnet.calc.NetDiffuser

fullTextHeight - Variable in class org.catacomb.druid.swing.dnd.RegionBoard

func - Variable in class org.catacomb.numeric.data.DataSlice

function - Variable in class org.catacomb.dataview.model.Plottable

function - Variable in class org.catacomb.interlish.resource.Role

functionMaps - Variable in class org.catacomb.druid.load.RoleMap

functionName - Variable in class org.catacomb.act.FunctionSignature

functionName - Variable in class org.catacomb.act.MethodSignature

FunctionSignature - Class in org.catacomb.act

FunctionSignature(String) - Constructor for class org.catacomb.act.FunctionSignature

FunctionSignature(String, int) - Constructor for class org.catacomb.act.FunctionSignature

fviewdir - Variable in class org.catacomb.dataview.BatchImageMaker

fwrcTrans - Variable in class org.textensor.vis.SceneGraphViewer

fwTrans - Variable in class org.textensor.vis.SceneGraphViewer

G

g - Variable in class org.catacomb.graph.gui.Painter

g - Variable in class org.catacomb.graph.gui.PointPainter

g_init_bits - Variable in class org.catacomb.movie.gif.LZWEncoder

gamma - Static variable in class org.catacomb.movie.gif.NeuQuant

gammashift - Static variable in class org.catacomb.movie.gif.NeuQuant

gammln(double) - Static method in class org.catacomb.numeric.math.Random

gammln(double) - Method in class org.textensor.stochdiff.numeric.math.MersenneTwister

gammln(double) - Static method in class org.textensor.stochdiff.numeric.math.RandomMath

gaussian() - Method in class org.textensor.stochdiff.numeric.math.MersenneTwister

gaussianRV() - Static method in class org.catacomb.numeric.math.Random

gaussianRV() - Static method in class org.textensor.stochdiff.numeric.math.NRRandom

gaussianStep(int, double, double, double) - Static method in class org.textensor.stochdiff.numeric.stochastic.StepGenerator

gaussianStep(int, double, double, double, double, int) - Static method in class org.textensor.stochdiff.numeric.stochastic.StepGenerator

gcm - Variable in class org.catacomb.graph.gui.GraphContextMenu.GCMHandler

gcols - Variable in class org.catacomb.graph.gui.AboveBelowSplitAxisPanelUI

gcols - Variable in class org.catacomb.graph.gui.AboveBelowSplitPanel

gcols - Variable in class org.catacomb.graph.gui.AboveBelowSplitPanelUI

gcols - Variable in class org.catacomb.graph.gui.DataDisplay

gcols - Variable in class org.catacomb.graph.gui.HorizontalAxisAxisDivider

gcols - Variable in class org.catacomb.graph.gui.HorizontalAxisGraphDivider

gcols - Variable in class org.catacomb.graph.gui.LeftRightSplitPanel

gcols - Variable in class org.catacomb.graph.gui.LeftRightSplitPanelUI

gcols - Variable in class org.catacomb.graph.gui.VerticalAxisGraphDivider

generators - Variable in class org.textensor.stochdiff.numeric.stochastic.DiscretePStepGenerator

Generic - Interface in org.catacomb.interlish.structure

GenericShape - Class in org.catacomb.graph.drawing

GenericShape() - Constructor for class org.catacomb.graph.drawing.GenericShape

GenericShape(Shape, Position, double) - Constructor for class org.catacomb.graph.drawing.GenericShape

Geom - Class in org.catacomb.geom

Geom() - Constructor for class org.catacomb.geom.Geom

Geom - Class in org.catacomb.graph.gui

Geom() - Constructor for class org.catacomb.graph.gui.Geom

Geom - Class in org.textensor.stochdiff.geom

Geom() - Constructor for class org.textensor.stochdiff.geom.Geom

GEOM_2D - Static variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

GEOM_3D - Static variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

geometricalType - Variable in class org.catacomb.numeric.difnet.CellPoint

geometry - Variable in class org.textensor.stochdiff.model.SDRun

get(String) - Method in class org.catacomb.druid.build.DruidTargetStore

get(String) - Method in interface org.catacomb.druid.event.Provider

get(String) - Method in class org.catacomb.interlish.content.KeyedList

get(String) - Method in class org.catacomb.interlish.reflect.ObjectAccessor

get(String) - Method in class org.catacomb.interlish.reflect.ReflectionWrapper

get() - Static method in class org.catacomb.interlish.service.ActionManager

get() - Static method in class org.catacomb.interlish.service.ScriptManager

get(String) - Method in interface org.catacomb.interlish.structure.Structure

get(String, String) - Method in interface org.catacomb.interlish.structure.Supplier

get(String) - Method in interface org.catacomb.interlish.structure.TargetStore

get(String) - Method in class org.catacomb.numeric.data.DataExtractor

get(String) - Method in class org.catacomb.numeric.data.NumDataSet

get() - Method in class org.catacomb.serial.quickxml.Element

get(String) - Method in class org.catacomb.serial.quickxml.Element

get(String, String) - Method in class org.catacomb.serial.quickxml.Element

get(Object, String) - Static method in class org.catacomb.util.Reflector

get2Center() - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

get2Center() - Method in class org.catacomb.graph.gui.DrawingCanvas

get2Center() - Method in class org.catacomb.graph.gui.WorldCanvas

get2Center() - Method in class org.catacomb.graph.gui.WorldTransform

get3Center() - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

get3Center() - Method in class org.catacomb.graph.gui.DrawingCanvas

get3Center() - Method in class org.catacomb.graph.gui.WorldCanvas

get3Center() - Method in class org.catacomb.graph.gui.WorldTransform

getAbscissa() - Method in class org.catacomb.graph.gui.DataView

getAbsolutePosition() - Method in class org.catacomb.graph.drawing.ShapePoint

getAbsolutePosition() - Method in interface org.catacomb.graph.gui.AbsLocated

getAccessee() - Method in class org.catacomb.interlish.reflect.ObjectAccessor

getAccessee() - Method in interface org.catacomb.interlish.structure.Accessor

getAction() - Method in class org.catacomb.druid.build.ContingencyGroup

getAction() - Method in class org.catacomb.druid.gui.edit.DruGCPanel

getActionCommand() - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

getActionRelay() - Method in class org.catacomb.druid.gui.edit.DruGCPanel

getActive() - Method in class org.catacomb.druid.swing.dnd.RegionStore

getActiveArea() - Method in class org.catacomb.numeric.difnet.model.BasicStructureLink

getActiveFont() - Method in class org.catacomb.druid.xtext.canvas.FontStore

getActiveLimits() - Method in class org.catacomb.druid.swing.dnd.RegionStore

getActiveTag() - Method in class org.catacomb.druid.swing.dnd.RegionStore

getActor() - Method in class org.catacomb.druid.gui.base.DruActionRelay

getAlgorithmID() - Method in class org.textensor.stochdiff.model.SDRun

getAlign() - Method in interface org.catacomb.druid.build.Aligned

getAll(String, String) - Method in class org.catacomb.serial.quickxml.Element

getAll(String) - Method in class org.catacomb.serial.quickxml.Element

getAllItems() - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

getAllItems() - Method in class org.catacomb.druid.gui.edit.DruToggleListPanel

getAllItems() - Method in class org.catacomb.druid.swing.DCheckboxList

getAlongArea() - Method in class org.textensor.stochdiff.numeric.morph.CuboidVolumeElement

getAlongArea() - Method in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

getAnonymousComponentMap() - Method in class org.catacomb.druid.build.GUIStore

getAnonymousComponents() - Method in class org.catacomb.druid.build.Context

getAnonymousComponents() - Method in class org.catacomb.druid.build.GUIStore

getAppearance(Color) - Method in class org.textensor.vis.SceneGraphBuilder

getApplicationName() - Method in class org.catacomb.druid.load.DruidAppBase

getApplicationName() - Static method in class org.catacomb.interlish.service.AppPersist

getAppliedValue(DiffusibleQuantity) - Method in class org.catacomb.numeric.difnet.model.BasicStateNode

getAppliedValue(DiffusibleQuantity) - Method in interface org.catacomb.numeric.difnet.StateNode

getArea() - Method in class org.catacomb.numeric.difnet.model.BasicStructureNode

getArea(Position[]) - Static method in class org.textensor.stochdiff.geom.Geom

getAreaIndexes(String[]) - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

getArrayListField(Object, String) - Static method in class org.catacomb.util.Reflector

getAsElementsText() - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

getAsPlainText() - Method in class org.textensor.stochdiff.numeric.morph.CuboidVolumeElement

getAsPlainText() - Method in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

getAsPlainText() - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

getAssembly() - Method in interface org.catacomb.interlish.structure.Table

getAssemblyEditor() - Method in class org.catacomb.druid.build.DruidTargetStore

getAssemblyEditor() - Method in interface org.catacomb.interlish.structure.TargetStore

getAsString() - Method in class org.catacomb.interlish.content.ColorValue

getAsString() - Method in class org.catacomb.interlish.content.StringValue

getAsTableText() - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

getAsText() - Method in class org.textensor.stochdiff.numeric.morph.CuboidVolumeElement

getAsText() - Method in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

getAsText() - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

getAsText() - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

getAText() - Method in class org.catacomb.druid.xtext.data.XRelation

getAttachmentPoints() - Method in class org.catacomb.graph.arbor.SegmentGraph

getAttachmentPoints() - Method in interface org.catacomb.interlish.structure.PointAttachable

getAttribute(String, String, String) - Static method in class org.catacomb.icon.splash.Splasher

getAttribute(String, String) - Static method in class org.catacomb.icon.splash.Splasher

getAttribute(String) - Method in interface org.catacomb.interlish.structure.Attributed

getAttribute(String) - Method in class org.catacomb.serial.om.OmElement

getAttribute(String, String, String) - Static method in class org.catacomb.serial.quickxml.ElementExtractor

getAttribute(String, String) - Static method in class org.catacomb.serial.quickxml.ElementExtractor

getAttribute(String) - Method in class org.catacomb.serial.xml.XMLToken

getAttribute(String) - Method in class org.textensor.xml.XMLToken

getAttributeArray() - Method in interface org.catacomb.interlish.structure.Attributed

getAttributeArray() - Method in class org.catacomb.serial.om.OmElement

getAttributeName(int) - Method in class org.catacomb.serial.xml.XMLToken

getAttributeName(int) - Method in class org.textensor.xml.XMLToken

getAttributes() - Method in interface org.catacomb.interlish.structure.Attributed

getAttributes() - Method in class org.catacomb.serial.om.OmElement

getAttributes() - Method in class org.catacomb.serial.xml.XMLToken

getAttributes() - Method in class org.textensor.xml.XMLToken

getAttributeValue(int) - Method in class org.catacomb.serial.xml.XMLToken

getAttributeValue(int) - Method in class org.textensor.xml.XMLToken

getAutoRerun() - Method in interface org.catacomb.interlish.structure.RunProcess

getAzimuthalSplits(double, double[]) - Method in class org.textensor.stochdiff.disc.CurvedVolumeSlice

getBackground() - Method in class org.catacomb.druid.swing.DSplitPaneUI

getBackground() - Method in class org.catacomb.interlish.content.ColorSet

getBackgroundColor() - Static method in class org.catacomb.druid.swing.LAF

getBalancedSlices(double, int) - Method in class org.textensor.stochdiff.disc.SegmentSlicer

getBalancedSubdivision(TreePoint, TreePoint) - Method in class org.textensor.stochdiff.disc.SegmentSlicer

getBaseLabel() - Method in class org.catacomb.druid.swing.DCheckbox

getBaseLabel() - Method in class org.catacomb.druid.swing.DCheckboxMenuItem

getBaseLabel() - Method in class org.catacomb.druid.swing.DMenuItem

getBearing() - Method in class org.catacomb.interlish.content.Heading

getBg() - Method in class org.catacomb.druid.build.Context

getBg() - Method in class org.catacomb.druid.gui.base.DruPanel

getBg() - Method in class org.catacomb.interlish.content.ColorSet

getBinomialGenerator() - Static method in class org.textensor.stochdiff.numeric.stochastic.InterpolatingStepGenerator

getBlock(int) - Method in class org.catacomb.numeric.data.BlockStack

getBlocks() - Method in class org.catacomb.druid.xtext.base.ContainerBlock

getBlockStacks() - Method in class org.catacomb.numeric.data.NumDataStore

getBody() - Method in class org.catacomb.interlish.report.Message

getBody() - Method in class org.catacomb.serial.om.OmElement

getBoldFont() - Method in class org.catacomb.druid.xtext.canvas.FontStore

getBoolean(String) - Method in class org.catacomb.druid.gui.base.DruActionRelay

getBoolean() - Method in class org.catacomb.interlish.content.BooleanValue

getBoolean(String) - Method in interface org.catacomb.interlish.structure.FlatDataStore

getBorderBackground() - Method in class org.catacomb.graph.gui.AxisGraphDivider

getBorderBg() - Method in class org.catacomb.graph.gui.GraphColors

getBorderFg() - Method in class org.catacomb.graph.gui.GraphColors

getBorderForeground() - Method in class org.catacomb.graph.gui.AxisGraphDivider

getBottomMargin() - Method in class org.catacomb.graph.gui.WorldTransform

getBoundaries() - Method in class org.textensor.stochdiff.disc.DiscretizedSpine

getBoundary(ArrayList<Position>) - Static method in class org.catacomb.geom.Geom

getBoundary() - Method in class org.catacomb.graph.drawing.FixedDrawing

getBoundary() - Method in class org.catacomb.graph.gui.SimpleVectorSprite

getBoundary() - Method in interface org.catacomb.interlish.content.VectorSprite

getBoundary() - Method in class org.catacomb.numeric.data.XYVectorSprite

getBoundaryPoints() - Method in class org.catacomb.graph.drawing.Shape

getBoundaryRegion() - Method in class org.catacomb.graph.drawing.Shape

getBoundarySegments() - Method in class org.catacomb.interlish.content.RShape

getBoundaryWidths(SpineProfile, double) - Method in class org.textensor.stochdiff.disc.SpineLocator

getBox() - Method in interface org.catacomb.datalish.SpriteAnimation

getBox() - Method in class org.catacomb.graph.gui.Painter

getBox() - Method in class org.catacomb.numeric.data.AnimSlice

getBranchGroup() - Method in class org.textensor.vis.SceneItem

getBText() - Method in class org.catacomb.druid.xtext.data.XRelation

getBufferedImage(int) - Method in class org.catacomb.dataview.DataviewController

getBufferedImage(int) - Method in class org.catacomb.graph.gui.MovieDisplay

getBufferedImage(Object) - Static method in class org.catacomb.util.AWTUtil

getButton(String) - Method in class org.catacomb.druid.build.DruidTargetStore

getButton() - Method in class org.catacomb.druid.gui.edit.DruButton

getButton() - Method in class org.catacomb.graph.gui.Mouse

getButton(String) - Method in interface org.catacomb.interlish.structure.TargetStore

getButton(MouseEvent) - Static method in class org.catacomb.util.MouseUtil

getByGetter(String) - Method in class org.catacomb.interlish.reflect.ObjectAccessor

getByGetter(String) - Method in class org.catacomb.interlish.reflect.ReflectionWrapper

getByIndex(int[]) - Method in class org.catacomb.numeric.data.DDSlice

getByIndex(int[]) - Method in interface org.catacomb.numeric.data.NumVectorSet

getCache() - Method in class org.catacomb.druid.build.Context

getCache() - Static method in class org.catacomb.graph.drawing.IconImageCache

getCache() - Method in interface org.catacomb.graph.gui.Pickable

getCache() - Method in class org.catacomb.graph.gui.PickablePoint

getCache() - Method in class org.catacomb.graph.gui.PickableRegion

getCached() - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

getCachedObject() - Method in class org.catacomb.druid.manifest.DecFile

getCachedPlayer() - Method in class org.catacomb.interlish.resource.Role

getCachedPosition() - Method in class org.catacomb.druid.xtext.base.TextBlock

getCachedPosition() - Method in class org.catacomb.graph.drawing.ShapePoint

getCachedText() - Method in class org.catacomb.druid.manifest.DecFile

getCalc(SDRun) - Method in enum org.textensor.stochdiff.SDCalcType

getCalculationSeed() - Method in class org.textensor.stochdiff.numeric.BaseCalc

getCanvas() - Method in class org.catacomb.druid.gui.base.DruScratchPanel

getCanvas() - Method in class org.catacomb.druid.gui.base.DruScrollableTextPanel

getCanvas() - Method in class org.catacomb.druid.gui.base.DruTextPanel

getCanvas() - Method in class org.catacomb.druid.swing.dnd.RegionBoard

getCanvasHeight() - Method in class org.catacomb.graph.gui.Mouse

getCanvasHeight() - Method in class org.catacomb.graph.gui.Painter

getCanvasHeight() - Method in class org.catacomb.graph.gui.WorldTransform

getCanvasWidth() - Method in class org.catacomb.graph.gui.Mouse

getCanvasWidth() - Method in class org.catacomb.graph.gui.Painter

getCanvasWidth() - Method in class org.catacomb.graph.gui.WorldTransform

getCapacitance(DiffusibleQuantity) - Method in class org.catacomb.numeric.difnet.model.BasicStateLink

getCapacitance(DiffusibleQuantity) - Method in class org.catacomb.numeric.difnet.model.BasicStateNode

gets the capacitance of this node.

getCapacitance() - Method in class org.catacomb.numeric.difnet.model.BasicStructureLink

getCapacitance() - Method in class org.catacomb.numeric.difnet.model.BasicStructureNode

getCapacitance(DiffusibleQuantity) - Method in interface org.catacomb.numeric.difnet.StateLink

getCapacitance(DiffusibleQuantity) - Method in interface org.catacomb.numeric.difnet.StateNode

gets the capacitance of this node.

getCardIndex(String) - Method in class org.catacomb.druid.gui.base.DruPseudoCardPanel

getCaretBlock() - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

getCaretPos() - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

getCenter() - Method in class org.catacomb.datalish.Box

getCenterConstraints() - Static method in class org.catacomb.druid.gui.base.DruBorderPanel

getCenterLocationOnScreen() - Method in class org.catacomb.druid.swing.DPanel

getChangeTime() - Method in class org.catacomb.numeric.data.BlockStack

getChannels() - Method in interface org.catacomb.interlish.structure.MultiChanneled

getChannels() - Method in class org.catacomb.numeric.data.EventSequence

getCheckedIndexes() - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

getCheckedIndexes() - Method in class org.catacomb.druid.swing.DCheckboxList

getCheckedItems() - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

getCheckedItems() - Method in class org.catacomb.druid.gui.edit.DruToggleListPanel

getCheckedItems() - Method in class org.catacomb.druid.swing.DCheckboxList

getChild(int) - Method in class org.catacomb.druid.gui.base.DummyTree

getChild(Object, int) - Method in class org.catacomb.druid.swing.DTreeModel

getChild(int) - Method in class org.catacomb.druid.swing.EmptyTree

getChild(int) - Method in class org.catacomb.druid.util.examples.DemoNode

getChild(int) - Method in class org.catacomb.druid.util.tree.ArrayListNode

getChild(int) - Method in class org.catacomb.druid.xtext.base.DocStore

getChild(int) - Method in class org.catacomb.druid.xtext.base.XTDoc

getChild(String) - Method in interface org.catacomb.interlish.structure.Parent

getChild(int) - Method in interface org.catacomb.interlish.structure.TreeNode

getChild(int) - Method in class org.catacomb.numeric.data.BlockStack

getChild(String) - Method in class org.catacomb.numeric.data.BlockStack

getChild(int) - Method in class org.catacomb.numeric.data.DVector

getChild(int) - Method in class org.catacomb.numeric.data.NumDataStore

getChild(String) - Method in class org.catacomb.numeric.data.NumDataStore

getChild(int) - Method in class org.catacomb.numeric.data.StackMultipleSlice

getChild(int) - Method in class org.catacomb.numeric.data.StackSingleSlice

getChild(int) - Method in class org.catacomb.util.StringTree

getChild(int) - Method in class org.catacomb.util.StringTreeLeaf

getChildCount() - Method in class org.catacomb.druid.gui.base.DummyTree

getChildCount(Object) - Method in class org.catacomb.druid.swing.DTreeModel

getChildCount() - Method in class org.catacomb.druid.swing.EmptyTree

getChildCount() - Method in class org.catacomb.druid.util.examples.DemoNode

getChildCount() - Method in class org.catacomb.druid.util.tree.ArrayListNode

getChildCount() - Method in class org.catacomb.druid.xtext.base.DocStore

getChildCount() - Method in class org.catacomb.druid.xtext.base.XTDoc

getChildCount() - Method in interface org.catacomb.interlish.structure.TreeNode

getChildCount() - Method in class org.catacomb.numeric.data.BlockStack

getChildCount() - Method in class org.catacomb.numeric.data.DVector

getChildCount() - Method in class org.catacomb.numeric.data.NumDataStore

getChildCount() - Method in class org.catacomb.numeric.data.StackMultipleSlice

getChildCount() - Method in class org.catacomb.numeric.data.StackSingleSlice

getChildCount() - Method in class org.catacomb.util.StringTree

getChildCount() - Method in class org.catacomb.util.StringTreeLeaf

getChildObject(Object, String, Attribute[]) - Method in class org.catacomb.interlish.reflect.ReflectionConstructor

getChildObject(Object, String, Attribute[]) - Method in interface org.catacomb.interlish.structure.Constructor

getChildObject(Object, String, Attribute[]) - Method in class org.catacomb.serial.om.ElementConstructor

getChildObject(Object, String, Attribute[]) - Method in class org.catacomb.serial.xml.VectorConstructor

getChildObject(Object, String, Attribute[]) - Method in class org.textensor.xml.ReflectionInstantiator

getChildren() - Method in interface org.catacomb.interlish.structure.HistoriableContainer

getChildren() - Method in interface org.catacomb.interlish.structure.SingleParent

getChildren() - Method in class org.catacomb.util.StringTree

getChildTree(String) - Method in class org.catacomb.util.StringTree

getChoice(String) - Method in class org.catacomb.druid.build.DruidTargetStore

getChoice(String) - Method in interface org.catacomb.interlish.structure.TargetStore

getChooser() - Static method in class org.catacomb.druid.util.FileChooser

getClaimant(int, int, double, double) - Method in class org.catacomb.graph.gui.PickStore

getClaimantRefX() - Method in class org.catacomb.graph.gui.PickStore

getClaimantRefY() - Method in class org.catacomb.graph.gui.PickStore

getClassName() - Method in class org.catacomb.act.Classdef

getCloseTagString() - Method in class org.catacomb.serial.xml.XMLToken

getCloseTagString() - Method in class org.textensor.xml.XMLToken

getClosure() - Method in class org.catacomb.interlish.content.Polypoint

getCoControllers() - Method in interface org.catacomb.interlish.structure.RootController

getCoHandler() - Method in interface org.catacomb.dataview.formats.DataHandler

getCoHandler() - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

getCoHandler() - Method in class org.catacomb.dataview.formats.MeshSummary

getCoHandler() - Method in class org.catacomb.dataview.formats.PolyLineHandler

getCoHandler() - Method in class org.catacomb.dataview.formats.SWCDisplay

getCoHandler() - Method in class org.catacomb.dataview.formats.TableDataHandler

getCollapsedIcon() - Method in class org.catacomb.druid.swing.ui.DruidTreeUI

getColor() - Method in class org.catacomb.datalish.SColor

getColor() - Method in class org.catacomb.dataview.build.Displayable

getColor() - Method in class org.catacomb.dataview.model.Plottable

getColor() - Method in class org.catacomb.dataview.PlotElement

getColor(int) - Static method in class org.catacomb.druid.color.StandardPalette

getColor() - Method in class org.catacomb.druid.gui.edit.DruColorChoice

getColor() - Method in class org.catacomb.druid.swing.ToggleItem

getColor(String, Color) - Static method in class org.catacomb.druid.util.ColorChooser

getColor() - Method in class org.catacomb.druid.xtext.base.Guise

getColor() - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

getColor() - Method in class org.catacomb.graph.gui.DisplayStyleSet

getColor() - Method in class org.catacomb.graph.gui.PickablePoint

getColor(int) - Method in class org.catacomb.interlish.content.ColorTable

getColor(double) - Method in class org.catacomb.interlish.content.ColorTable

getColor() - Method in class org.catacomb.interlish.content.ConnectionFlavor

getColor() - Method in interface org.catacomb.interlish.content.VectorScene

getColor() - Method in interface org.catacomb.interlish.structure.Colored

getColor() - Method in class org.catacomb.numeric.data.XYVectorScene

getColor() - Method in class org.catacomb.util.ColorDef

getColor(String) - Method in class org.catacomb.util.StandardColors

getColor() - Method in class org.textensor.vis.IcingPoint

getColors() - Method in class org.catacomb.interlish.content.ColorTable

getColorSet() - Method in class org.catacomb.druid.build.Context

getColorTable(String) - Method in class org.catacomb.graph.gui.DisplayStylesData

getColorTable() - Method in class org.catacomb.graph.gui.DisplayStyleSet

getColorTable() - Method in interface org.catacomb.interlish.structure.ColorMapped

getColorTableName() - Method in class org.catacomb.graph.gui.DisplayStyleSet

getColorTables() - Method in class org.catacomb.graph.gui.DisplayStylesData

getColorValueEditor(String) - Method in class org.catacomb.druid.build.DruidTargetStore

getColorValueEditor(String) - Method in interface org.catacomb.interlish.structure.TargetStore

getColumn(int) - Method in class org.catacomb.numeric.data.DataTable

getColumn(int) - Method in class org.catacomb.numeric.math.Matrix

getColumn(int) - Method in class org.textensor.stochdiff.numeric.math.Matrix

getColumnData() - Method in class org.textensor.stochdiff.numeric.math.Matrix

getColumns() - Method in class org.catacomb.numeric.data.DataTable

getCompactElementText(String, String) - Static method in class org.catacomb.icon.splash.Splasher

getCompactElementText(String, String) - Static method in class org.catacomb.serial.quickxml.ElementExtractor

getComponent(String) - Method in class org.catacomb.druid.gui.base.PanelPack

getComponents() - Method in class org.catacomb.druid.build.GUIStore

getComponents() - Method in class org.catacomb.graph.drawing.FixedDrawing

getComponents() - Method in interface org.catacomb.interlish.structure.Assembly

getCompressedForm() - Method in class org.catacomb.util.StringTree

getConc1() - Method in class org.textensor.stochdiff.inter.SDState

getConc2() - Method in class org.textensor.stochdiff.inter.SDState

getConcentrations() - Method in class org.textensor.stochdiff.numeric.StaticCalc

getConcHM() - Method in class org.textensor.stochdiff.model.ConcentrationSet

getConductance(DiffusibleQuantity) - Method in class org.catacomb.numeric.difnet.model.BasicStateLink

getConductance() - Method in class org.catacomb.numeric.difnet.model.BasicStructureLink

getConductance(DiffusibleQuantity) - Method in interface org.catacomb.numeric.difnet.StateLink

getConfirmation(int[], String) - Static method in class org.catacomb.druid.dialog.Dialoguer

getConnections() - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

getConnectors() - Method in class org.catacomb.graph.drawing.IconEditorController

getConstraintsForCell(int, int, Container, int) - Static method in class org.catacomb.druid.swing.SpringUtilities

getContactArea() - Method in class org.textensor.stochdiff.numeric.morph.ElementConnection

getContent() - Method in class org.catacomb.druid.blocks.HTMLContent

getContent() - Method in class org.catacomb.druid.gui.base.DruFrame

getContent() - Static method in class org.catacomb.interlish.interact.Clipboard

getContent() - Method in class org.catacomb.serial.xml.XMLHolder

getContent() - Method in class org.textensor.xml.XMLReader.XMLHolder

getContentLoader() - Static method in class org.catacomb.interlish.service.ResourceAccess

getContentStyle() - Method in interface org.catacomb.dataview.formats.DataHandler

getContentStyle() - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

getContentStyle() - Method in class org.catacomb.dataview.formats.MeshSummary

getContentStyle() - Method in class org.catacomb.dataview.formats.PolyLineHandler

getContentStyle() - Method in class org.catacomb.dataview.formats.SWCDisplay

getContentStyle() - Method in class org.catacomb.dataview.formats.TableDataHandler

getContentType(byte[]) - Method in class org.catacomb.dataview.read.ResourceImporter

getContext() - Method in class org.catacomb.dataview.read.BaseContentReader

getContext() - Method in interface org.catacomb.dataview.read.ContentReader

getContext() - Method in class org.catacomb.druid.guimodel.LogEntry

getContext() - Method in interface org.catacomb.interlish.structure.InfoMessage

getContext() - Method in class org.catacomb.serial.OmElementizer

getContingencyGroup(String) - Method in class org.catacomb.druid.build.Context

getController() - Method in class org.catacomb.dataview.DataViewer

getController() - Method in class org.catacomb.druid.build.Druid

getControllerPath() - Method in class org.catacomb.druid.gui.base.DruRoot

getControllerPath() - Method in interface org.catacomb.interlish.structure.ControllerSpecifier

getCopy() - Method in class org.catacomb.interlish.content.Polypoint

getCosine() - Method in class org.catacomb.be.Direction

getCRCString(String) - Method in class org.catacomb.util.CRC

getCurviness() - Method in class org.catacomb.graph.drawing.Shape

getCutDownArray() - Method in class org.catacomb.numeric.data.DoubleArray

getCX() - Method in class org.textensor.vis.VolElt

getCY() - Method in class org.textensor.vis.VolElt

getCZ() - Method in class org.textensor.vis.VolElt

getData(DataExtractor, int) - Method in class org.catacomb.dataview.build.Displayable

getData(DataExtractor, int) - Method in class org.catacomb.dataview.build.DisplayablePoint

getData(DataExtractor, int) - Method in class org.catacomb.dataview.build.Line

getData() - Method in class org.catacomb.dataview.formats.MeshDataReader

getData() - Static method in class org.catacomb.graph.gui.DisplayStylesData

getData() - Method in class org.catacomb.movie.gif.ByteAccumulator

getData() - Method in class org.catacomb.numeric.data.DDSlice

getData() - Method in class org.catacomb.numeric.data.DDSubSlice

getData() - Method in class org.catacomb.numeric.data.DoubleArray

getData() - Method in class org.catacomb.numeric.data.DSlice

getData() - Method in class org.catacomb.numeric.data.DVector

getData() - Method in interface org.catacomb.numeric.data.NumVector

getData() - Method in class org.textensor.stochdiff.inter.SDState

getData() - Method in class org.textensor.stochdiff.numeric.math.Column

getDataBackground() - Method in class org.catacomb.graph.gui.BaseCanvas

getDataBackground() - Method in class org.catacomb.interlish.content.ColorSet

getDataForeground() - Method in class org.catacomb.interlish.content.ColorSet

getDataSet(String) - Method in class org.catacomb.numeric.data.DataExtractor

getDataSets() - Method in interface org.catacomb.interlish.structure.DataSetSource

getDataSets() - Method in class org.catacomb.numeric.data.DataSetArray

getDataSource() - Method in class org.catacomb.dataview.build.Dataview

getDataView(String) - Method in class org.catacomb.graph.gui.ViewSet

getDataViews() - Method in class org.catacomb.graph.gui.ViewSet

getDData() - Method in class org.catacomb.numeric.data.DDSlice

getDefault() - Static method in class org.catacomb.druid.xtext.StandardGuises

getDefaultBox() - Method in class org.catacomb.dataview.formats.PolyLineHandler

getDefaultFont() - Method in class org.catacomb.druid.xtext.canvas.FontStore

getDefaultItalicFont() - Method in class org.catacomb.druid.xtext.canvas.FontStore

getDefaultNanoMolarConcentrations(String[]) - Method in class org.textensor.stochdiff.model.InitialConditions

getDeltaT() - Method in class org.catacomb.be.BasicTimestep

getDeltaT() - Method in interface org.catacomb.be.Timestep

getDensity() - Method in class org.textensor.stochdiff.numeric.morph.SpinePopulation

getDescendantPaths(TreePath) - Method in class org.catacomb.druid.swing.CheckTreeSelectionModel

getDescendants(String) - Method in class org.catacomb.interlish.content.KeyedList

getDescription() - Method in class org.catacomb.druid.swing.ExtFileFilter

getDescription() - Method in interface org.catacomb.interlish.structure.Described

getDescription() - Method in interface org.catacomb.interlish.structure.IdentifierLabel

getDialog(String) - Method in class org.catacomb.druid.build.DruidTargetStore

getDialog(String) - Method in interface org.catacomb.interlish.structure.TargetStore

getDialogDeclaration() - Method in class org.catacomb.druid.dialog.DialogController

getDiffusionConstant() - Method in class org.textensor.stochdiff.model.Specie

getDiffusionConstants() - Method in class org.textensor.stochdiff.model.ReactionScheme

getDiffusionConstants() - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

getDir(String) - Method in class org.catacomb.util.DirRef

getDirection() - Method in class org.catacomb.be.Placement

getDirection() - Method in class org.catacomb.interlish.content.Heading

getDirectly(String) - Method in class org.catacomb.interlish.reflect.ObjectAccessor

getDirectly(String) - Method in class org.catacomb.interlish.reflect.ReflectionWrapper

getDirectory() - Method in class org.catacomb.druid.manifest.DecFile

getDirectory(File, String) - Method in class org.catacomb.druid.util.FileChooser

getDirectory(String, String) - Method in class org.catacomb.druid.util.FileChooser

getDirectory(String) - Method in class org.catacomb.druid.util.FileChooser

getDirName() - Method in class org.catacomb.util.DirRef

getDiscretization() - Method in class org.textensor.stochdiff.model.SDRun

getDisplayables(File) - Method in class org.catacomb.dataview.model.Line

getDisplayables(File) - Method in class org.catacomb.dataview.model.LineSet

getDisplayables(File) - Method in class org.catacomb.dataview.model.Plottable

getDisplayText() - Method in class org.catacomb.druid.xtext.base.WordBlock

getDisplayText() - Method in class org.catacomb.druid.xtext.data.XRelationType

getDisplayText() - Method in class org.catacomb.druid.xtext.data.XType

getDisplayText() - Method in interface org.catacomb.interlish.structure.TextDisplayed

getDistal() - Method in class org.textensor.stochdiff.neuroml.segment

getDistributionID() - Method in class org.textensor.stochdiff.model.SDRun

getDividerLocation() - Method in class org.catacomb.graph.gui.AboveBelowSplitPanel

getDnD() - Static method in class org.catacomb.druid.swing.dnd.DragAndDrop

getDoc() - Method in class org.catacomb.druid.gui.base.DruRoot

getDoc() - Method in interface org.catacomb.interlish.structure.Documented

getDocByID(String) - Method in class org.catacomb.druid.xtext.base.DocStore

getDocument() - Static method in class org.catacomb.druid.xtext.StandardGuises

getDouble() - Method in class org.catacomb.interlish.content.DoubleValue

getDouble(String) - Method in interface org.catacomb.interlish.structure.FlatDataStore

getDouble(String, double) - Static method in class org.catacomb.util.NumUtil

getDoubleValueEditor(String) - Method in class org.catacomb.druid.build.DruidTargetStore

getDoubleValueEditor(String) - Method in interface org.catacomb.interlish.structure.TargetStore

getDownBlock() - Method in class org.catacomb.druid.xtext.base.ContainerBlock

getDragImage() - Method in class org.catacomb.druid.swing.dnd.DdndTransferable

getDragImage() - Method in class org.catacomb.druid.swing.dnd.DragAndDrop

getDragImage() - Method in interface org.catacomb.druid.swing.ImageDragSource

getDragImageOffset() - Method in class org.catacomb.druid.swing.dnd.DdndTransferable

getDragImageOffset() - Method in class org.catacomb.druid.swing.dnd.DragAndDrop

getDragImageOffset() - Method in interface org.catacomb.druid.swing.ImageDragSource

getDragOverRegion(int, int) - Method in class org.catacomb.druid.swing.dnd.RegionBoard

getDragOverRegion() - Method in class org.catacomb.druid.swing.dnd.RegionBoard

getDragOverRegion() - Method in class org.catacomb.druid.swing.dnd.RegionStore

getDragSource() - Method in class org.catacomb.druid.swing.dnd.DragAndDrop

getDrive(DiffusibleQuantity) - Method in class org.catacomb.numeric.difnet.model.BasicStateLink

getDrive(DiffusibleQuantity) - Method in interface org.catacomb.numeric.difnet.StateLink

getDropee() - Method in class org.catacomb.druid.gui.edit.DruDropBox

getDropee() - Method in class org.catacomb.druid.swing.DDropCanvas

getDropee() - Method in class org.catacomb.druid.swing.DDropTextField

getDropField() - Method in class org.catacomb.druid.gui.edit.DruDropBox

getDruPanel() - Method in class org.catacomb.druid.gui.base.DruAppletPrep

getDt() - Method in class org.catacomb.be.TimePoint

getdt() - Method in class org.textensor.stochdiff.model.OutputSet

getDummyDoc(String) - Method in class org.catacomb.druid.xtext.base.DocStore

getDVectors() - Method in class org.catacomb.numeric.data.NumDataStore

getDX() - Method in class org.textensor.stochdiff.geom.GVector

getDX() - Method in interface org.textensor.stochdiff.geom.Vector

getDY() - Method in class org.textensor.stochdiff.geom.GVector

getDY() - Method in interface org.textensor.stochdiff.geom.Vector

getDZ() - Method in class org.textensor.stochdiff.geom.GVector

getDZ() - Method in interface org.textensor.stochdiff.geom.Vector

getEchoBox(PickablePoint) - Method in class org.catacomb.graph.gui.PickStore

getEditorPath(String) - Method in class org.catacomb.druid.load.DruidContentLoader

getEditorPath(String) - Method in interface org.catacomb.interlish.service.ContentLoader

getElement(String) - Method in interface org.catacomb.interlish.structure.Elemented

getElement(File) - Static method in class org.catacomb.serial.ElementImporter

getElement(String) - Method in class org.catacomb.serial.om.OmElement

getElement(Object) - Method in class org.catacomb.serial.OmElementizer

getElement(String) - Method in class org.catacomb.serial.quickxml.Element

getElement(int) - Method in class org.textensor.stochdiff.numeric.morph.VolumeLine

getElement(int, int) - Method in class org.textensor.stochdiff.numeric.morph.VolumeSlice

getElementA() - Method in class org.textensor.stochdiff.numeric.morph.ElementConnection

getElementArray() - Method in interface org.catacomb.interlish.structure.Elemented

getElementArray() - Method in class org.catacomb.serial.om.OmElement

getElementB() - Method in class org.textensor.stochdiff.numeric.morph.ElementConnection

getElementConcentrations() - Method in class org.textensor.stochdiff.numeric.StaticCalc

getElementFactory() - Method in class org.catacomb.serial.SerializationContext

getElements() - Method in interface org.catacomb.interlish.structure.Elemented

getElements() - Method in class org.catacomb.serial.om.OmElement

getElements() - Method in class org.catacomb.serial.quickxml.Element

getElements() - Method in class org.textensor.stochdiff.disc.CurvedVolumeSlice

getElements() - Method in class org.textensor.stochdiff.numeric.morph.VolumeLine

getElements() - Method in class org.textensor.stochdiff.numeric.morph.VolumeSlice

getElements() - Method in class org.textensor.vis.ElementReader

getElementsInRegion(String) - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

getElementText(String, String) - Static method in class org.catacomb.icon.splash.Splasher

getElementText(String, String) - Static method in class org.catacomb.serial.quickxml.ElementExtractor

getElementVolumes() - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

getEnd() - Method in class org.textensor.stochdiff.model.Segment

getEndTime() - Method in class org.textensor.stochdiff.model.SDRun

getErrorLine() - Method in interface org.catacomb.interlish.service.ScriptReport

getErrorText() - Method in interface org.catacomb.interlish.service.ScriptReport

getEvents() - Method in class org.catacomb.datalish.SceneConfig

getEventSequences() - Method in class org.catacomb.numeric.data.NumDataStore

getExpandedIcon() - Method in class org.catacomb.druid.swing.ui.DruidTreeUI

getExpandedMultiStringSelection() - Method in class org.catacomb.druid.gui.edit.DruCheckboxTreePanel

getExpandedMultiStringSelection() - Method in class org.catacomb.druid.swing.DCheckboxTree

getExplicitVector(String) - Method in class org.catacomb.numeric.data.DataExtractor

getExports() - Method in class org.catacomb.interlish.interact.CodgerTask

getExposedArea() - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

getExposedAreas() - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

getExposerOf(String) - Method in class org.catacomb.druid.load.DruidContentLoader

getExposerOf(String) - Method in interface org.catacomb.interlish.service.ContentLoader

getExtendedText() - Method in class org.catacomb.druid.xtext.base.TextBlock

getExtendedText() - Method in class org.catacomb.druid.xtext.base.WordBlock

getExtensionProto() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

getExtensionRelativeName(String) - Method in class org.catacomb.dataview.read.FileImportContext

getExtensionRelativeName(String) - Method in class org.catacomb.dataview.read.FUImportContext

getExtensionRelativeName(String) - Method in class org.catacomb.dataview.read.JarImportContext

getExternInstantiator() - Static method in class org.catacomb.interlish.service.ResourceAccess

getFactor(String) - Method in class org.textensor.stochdiff.model.Specie

getFactoryFor(String) - Method in class org.catacomb.druid.load.DruidContentLoader

getFactoryFor(String) - Method in interface org.catacomb.interlish.service.ContentLoader

getFg() - Method in class org.catacomb.druid.build.Context

getFg() - Method in class org.catacomb.interlish.content.ColorSet

getField(Object, String) - Method in class org.catacomb.interlish.reflect.ReflectionConstructor

getField(Object, String) - Method in interface org.catacomb.interlish.structure.Constructor

getField(Object, String) - Method in class org.catacomb.serial.om.ElementConstructor

getField(Object, String) - Method in class org.catacomb.serial.xml.VectorConstructor

getField(Object, String) - Method in class org.textensor.xml.ReflectionInstantiator

getFieldNames() - Method in class org.catacomb.druid.xtext.data.XType

getFields() - Method in class org.catacomb.druid.xtext.data.XType

getFieldValue(String) - Method in class org.catacomb.druid.xtext.data.XItem

getFieldValue(String) - Method in interface org.catacomb.interlish.structure.FieldValueProvider

getFieldValue(Field, Object) - Static method in class org.catacomb.serial.Reflector

getFile(String) - Static method in class org.catacomb.druid.dialog.Dialoguer

getFile(String, String) - Method in class org.catacomb.druid.util.FileChooser

getFile() - Method in class org.catacomb.serial.om.OmFileReader

getFile() - Method in class org.catacomb.serial.om.OmFileWriter

getFile() - Method in class org.catacomb.util.FileRef

getFile(File, String) - Static method in class org.textensor.stochdiff.inter.ModelReader

getFile() - Method in class org.textensor.stochdiff.ResultWriter

getFilePath() - Method in class org.catacomb.graph.drawing.IconImage

getFileResource(String, String) - Static method in class org.catacomb.interlish.util.JUtil

getFiles() - Method in class org.catacomb.druid.manifest.DecManifest

getFileToImport() - Method in class org.catacomb.druid.util.FileChooser

getFileToOpen(String) - Method in class org.catacomb.druid.util.FileChooser

getFileToRead(String) - Static method in class org.catacomb.druid.dialog.Dialoguer

getFileToWrite(String, File, String, String) - Static method in class org.catacomb.druid.dialog.Dialoguer

getFileToWrite(String) - Static method in class org.catacomb.druid.dialog.Dialoguer

getFileToWrite(String, String, String) - Method in class org.catacomb.druid.util.FileChooser

getFileToWrite(String) - Method in class org.catacomb.druid.util.FileChooser

getFillColor() - Method in class org.catacomb.datalish.SpritePart

getFillColor() - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

getFillColor() - Method in class org.catacomb.graph.drawing.Shape

getFillColor() - Method in class org.catacomb.graph.gui.SimpleVectorSprite

getFillColor() - Method in class org.catacomb.interlish.content.RShape

getFillColor() - Method in interface org.catacomb.interlish.content.VectorSprite

getFillColor() - Method in class org.catacomb.numeric.data.XYVectorSprite

getFinal() - Method in interface org.textensor.stochdiff.inter.Transitional

getFinal() - Method in class org.textensor.stochdiff.neuroml.cell

getFinal() - Method in class org.textensor.stochdiff.neuroml.morphml

getFirst() - Method in class org.catacomb.interlish.content.KeyedList

getFirstArraySlice() - Method in class org.catacomb.numeric.data.BlockStack

getFirstColorTable() - Method in class org.catacomb.graph.gui.DisplayStylesData

getFirstOverlap(double[], double[][]) - Method in class org.textensor.stochdiff.numeric.morph.VolumeLine

getFixedSubdivision(TreePoint, TreePoint) - Method in class org.textensor.stochdiff.disc.SegmentSlicer

getFixedWidthSlices(double, HashMap<String, Double>) - Method in class org.textensor.stochdiff.disc.SegmentSlicer

getFlatElement(Object) - Method in class org.catacomb.serial.OmElementizer

getFlavor() - Method in class org.catacomb.graph.arbor.SGAttachmentPoint

getFlavor() - Method in class org.catacomb.interlish.content.ConnectionFlavor

getFlavor() - Method in interface org.catacomb.interlish.structure.Flavored

getFlavor() - Method in interface org.catacomb.interlish.structure.Plug

getFlavor() - Method in interface org.catacomb.interlish.structure.Socket

getFloatValuedElements() - Method in class org.textensor.stochdiff.model.InitialConditions

getFname() - Method in class org.textensor.stochdiff.model.OutputSet

getFolder(int[], String, File) - Static method in class org.catacomb.druid.dialog.Dialoguer

getFolder(int[], String, File) - Method in class org.catacomb.druid.dialog.FolderDialogController

getFolder(File) - Method in class org.catacomb.druid.util.FileChooser

getFont() - Method in class org.catacomb.druid.xtext.base.Guise

getFont(String, String, String) - Method in class org.catacomb.druid.xtext.canvas.FontStore

getFont(String, int, int, String) - Method in class org.catacomb.druid.xtext.canvas.FontStore

getFontColor() - Method in class org.catacomb.druid.xtext.base.Guise

getFontFamily() - Method in class org.catacomb.druid.xtext.base.Guise

getFontSize() - Method in class org.catacomb.druid.xtext.base.Guise

getFontStyle() - Method in class org.catacomb.druid.xtext.base.Guise

getForeground() - Method in class org.catacomb.interlish.content.ColorSet

getFourMatrix() - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

getFourMatrix() - Method in class org.catacomb.graph.gui.DrawingCanvas

getFourMatrix() - Method in class org.catacomb.graph.gui.WorldCanvas

getFourMatrix() - Method in class org.textensor.vis.Icing3DViewer

getFourMatrix() - Method in class org.textensor.vis.SceneGraphViewer

getFourMatrix() - Method in interface org.textensor.vis.Visualizer

getFraction() - Method in class org.catacomb.druid.gui.edit.DruProgressReport

getFraction() - Method in class org.catacomb.interlish.report.PrintProgressReport

getFraction() - Method in interface org.catacomb.interlish.structure.ProgressReport

getFractionalColor(double) - Method in class org.catacomb.interlish.content.ColorTable

getFrameData(String, int) - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

getFrameDescription(int) - Method in interface org.catacomb.datalish.SpriteAnimation

getFrameDescription(int) - Method in interface org.catacomb.graph.gui.MoviePaintInstructor

getFrameDescription(int) - Method in class org.catacomb.graph.gui.SpriteMoviePainter

getFrameDescription(int) - Method in class org.catacomb.numeric.data.AnimSlice

getFrameShowable() - Method in class org.catacomb.druid.build.Druid

getFrameTitle() - Method in class org.catacomb.interlish.version.BuildInfo

getFrameValues() - Method in interface org.catacomb.dataview.formats.DataHandler

getFrameValues() - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

getFrameValues() - Method in class org.catacomb.dataview.formats.MeshDataReader

getFrameValues() - Method in class org.catacomb.dataview.formats.MeshSummary

getFrameValues() - Method in class org.catacomb.dataview.formats.PolyLineHandler

getFrameValues() - Method in class org.catacomb.dataview.formats.SWCDisplay

getFrameValues() - Method in class org.catacomb.dataview.formats.TableDataHandler

getFromURL(URL) - Static method in class org.catacomb.druid.load.DruidContentLoader

getFullID() - Method in class org.catacomb.druid.manifest.DecFile

getFullID() - Method in class org.catacomb.interlish.content.DocumentedComponent

getFullID(String) - Method in class org.catacomb.interlish.content.KeyedList

getFullPaths(String) - Static method in class org.catacomb.druid.build.Scope

getFullTextHeight() - Method in class org.catacomb.druid.swing.dnd.RegionBoard

getFullTextHeight() - Method in interface org.catacomb.interlish.structure.TextPainter

getFunction() - Method in class org.catacomb.interlish.resource.Role

getFunctionMap(String) - Method in class org.catacomb.druid.load.RoleMap

getGenerator(double) - Method in class org.textensor.stochdiff.numeric.stochastic.DiscretePStepGenerator

getGrandchildrenAsChildren() - Method in class org.catacomb.util.StringTree

getGraphBackground() - Method in class org.catacomb.graph.gui.AxisGraphDivider

getGraphBg() - Method in class org.catacomb.graph.gui.GraphColors

getGraphics() - Method in class org.catacomb.graph.gui.Painter

getGridConcsHeadings_dumb(int) - Method in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

getGridConcsHeadings_dumb(int, VolumeGrid) - Method in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

getGridConcsHeadings_dumb(int, VolumeGrid) - Method in class org.textensor.stochdiff.numeric.tmp.Tmp1A

getGridConcsPlainText_dumb(int, double) - Method in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

getGridConcsPlainText_dumb(int, double) - Method in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

getGridConcsPlainText_dumb(int, double) - Method in class org.textensor.stochdiff.numeric.tmp.Tmp1A

getGridConcsText(double) - Method in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

getGridConcsText(double) - Method in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

getGridConcsText(double) - Method in class org.textensor.stochdiff.numeric.tmp.Tmp1A

getGroupID() - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

getGroupID(int) - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

getGUIPeer() - Method in class org.catacomb.druid.gui.base.DruFrame

getGUIPeer() - Method in class org.catacomb.druid.gui.base.DruLabel

getGUIPeer() - Method in interface org.catacomb.druid.gui.base.DruListCellRenderer

getGUIPeer() - Method in class org.catacomb.druid.gui.base.DruListColorRenderer

getGUIPeer() - Method in class org.catacomb.druid.gui.base.DruListProgressRenderer

getGUIPeer() - Method in class org.catacomb.druid.gui.base.DruListQuantityRenderer

getGUIPeer() - Method in class org.catacomb.druid.gui.base.DruMenuBar

getGUIPeer() - Method in class org.catacomb.druid.gui.base.DruPanel

getGUIPeer() - Method in class org.catacomb.druid.gui.base.DruSplitterBar

getGUIPeer() - Method in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

getGUIPeer() - Method in class org.catacomb.druid.gui.edit.DruMenu

getGUIPeer() - Method in class org.catacomb.druid.gui.edit.DruMenuItem

getGuise() - Method in class org.catacomb.druid.xtext.base.Slot

getGuise() - Method in class org.catacomb.druid.xtext.base.TextBlock

getGuise() - Method in class org.catacomb.druid.xtext.data.XType

getGuise(String) - Method in class org.catacomb.druid.xtext.data.XTypeStore

getGUISources() - Method in class org.catacomb.dataview.FrameController

getGUISources() - Method in class org.catacomb.druid.build.TreeController

getGUISources() - Method in class org.catacomb.druid.util.ctrl.WindowCloser

getGUISources() - Method in interface org.catacomb.interlish.structure.GUISourced

getGUIStore() - Method in class org.catacomb.druid.build.Context

getGUITargets() - Method in class org.catacomb.dataview.FrameController

getH() - Method in class org.catacomb.druid.swing.dnd.Region

getH2Font() - Method in class org.catacomb.druid.xtext.canvas.FontStore

getHandler(String) - Static method in class org.catacomb.dataview.formats.DataHandlerFactory

getHashMap() - Method in class org.catacomb.druid.build.DruidTargetStore

getHashMap() - Method in class org.catacomb.serial.SerializationContext

getHashMapField(Object, String) - Static method in class org.catacomb.util.Reflector

getHeadings() - Method in class org.catacomb.numeric.data.DataTable

getHeadings() - Method in class org.textensor.stochdiff.numeric.morph.CuboidVolumeElement

getHeadings() - Method in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

getHeadings() - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

getHeight() - Method in class org.catacomb.dataview.model.LineGraph

getHeight() - Method in class org.catacomb.druid.swing.dnd.RegionBoard

getHeight() - Method in class org.catacomb.druid.xtext.base.TextFloat

getHeight() - Method in class org.catacomb.graph.gui.Size

getHeight() - Method in class org.catacomb.graph.gui.WorldTransform

getHelpText() - Method in interface org.catacomb.interlish.structure.Helpable

getHexValue(String) - Static method in enum org.catacomb.datalish.ColorNames

getHighlight() - Method in class org.catacomb.interlish.content.StringValue

getHighlightIndex() - Method in interface org.catacomb.interlish.structure.GridDataSource

getHistoryParent() - Method in interface org.catacomb.interlish.structure.Historiable

getHookupBoard() - Method in class org.catacomb.druid.build.GUIStore

getHoookupBoard() - Method in class org.catacomb.druid.build.DruidTargetStore

getHoverRegion() - Method in class org.catacomb.druid.swing.dnd.RegionBoard

getHoverRegion() - Method in class org.catacomb.druid.swing.dnd.RegionStore

getHTML() - Method in class org.catacomb.druid.guimodel.Log

getHTML() - Method in class org.catacomb.druid.guimodel.LogEntry

getHTML() - Method in interface org.catacomb.interlish.structure.InfoLog

getHTML() - Method in interface org.catacomb.interlish.structure.InfoMessage

getHTMLTemplate() - Method in class org.catacomb.druid.gui.base.DruBrowserPanel

getHTMLTemplate() - Method in class org.catacomb.druid.gui.base.DruInfoPanel

getHTMLTemplate() - Method in class org.catacomb.xdoc.HTMLPage

getHTMLText() - Method in class org.catacomb.druid.xtext.XtextPage

getHTMLText() - Method in interface org.catacomb.interlish.structure.Page

getHTMLText() - Method in class org.catacomb.xdoc.HTMLPage

getIBox(double) - Method in class org.textensor.stochdiff.numeric.morph.VolumeSlice

getIcon() - Method in class org.catacomb.graph.drawing.IconWrapper

getIconHeight() - Method in class org.catacomb.druid.swing.DChoice

getIconHeight() - Method in class org.catacomb.druid.swing.DComboBoxUI

Created a stub to satisfy the interface.

getIconHeight() - Method in class org.catacomb.druid.swing.DValueHistory

getIconWidth() - Method in class org.catacomb.druid.swing.DChoice

getIconWidth() - Method in class org.catacomb.druid.swing.DComboBoxUI

Created a stub to satisfy the interface.

getIconWidth() - Method in class org.catacomb.druid.swing.DValueHistory

getID() - Method in class org.catacomb.be.StructElement

getID() - Method in class org.catacomb.datalish.SpritePlacement

getID() - Method in class org.catacomb.dataview.display.ViewConfig

getID() - Method in class org.catacomb.dataview.model.View

getID() - Method in class org.catacomb.druid.blocks.Panel

getID() - Method in class org.catacomb.druid.gui.base.DruAutonomousPanel

getID() - Method in class org.catacomb.druid.gui.base.DruDialog

getID() - Method in class org.catacomb.druid.gui.base.DruFrame

getID() - Method in class org.catacomb.druid.gui.base.DruMenuBar

getID() - Method in class org.catacomb.druid.gui.base.DruPanel

getID() - Method in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

getID() - Method in class org.catacomb.druid.gui.edit.DruMenu

getID() - Method in class org.catacomb.druid.gui.edit.DruMenuItem

getID() - Method in class org.catacomb.druid.xtext.base.Guise

getID() - Method in class org.catacomb.druid.xtext.base.Slot

getID() - Method in class org.catacomb.druid.xtext.data.XRelationType

getID() - Method in class org.catacomb.druid.xtext.data.XType

getID() - Method in class org.catacomb.graph.arbor.SGAttachmentPoint

getID() - Method in class org.catacomb.graph.gui.DataView

getID() - Method in class org.catacomb.graph.gui.DisplayStyleSet

getID() - Method in class org.catacomb.graph.gui.ViewSet

getID() - Method in class org.catacomb.interlish.content.DocumentedComponent

getID() - Method in interface org.catacomb.interlish.structure.IDd

getID() - Method in interface org.catacomb.interlish.structure.Plug

getID() - Method in interface org.catacomb.interlish.structure.Socket

getID() - Method in class org.catacomb.numeric.data.DataTable

getID() - Method in class org.catacomb.numeric.difnet.model.PointRecorder

getID() - Method in class org.catacomb.numeric.difnet.model.PointStim

getID() - Method in class org.textensor.stochdiff.model.Segment

getID() - Method in class org.textensor.stochdiff.model.Specie

getID() - Method in class org.textensor.stochdiff.model.SpineAllocation

getID() - Method in class org.textensor.stochdiff.neuroml.cable

getID() - Method in class org.textensor.stochdiff.neuroml.MorphMLPoint

getID() - Method in class org.textensor.stochdiff.neuroml.segment

getID() - Method in class org.textensor.stochdiff.numeric.morph.SpinePopulation

getID() - Method in class org.textensor.stochdiff.numeric.morph.SpineProfile

getID() - Method in class org.textensor.vis.IcingPoint

getID() - Method in class org.textensor.vis.SceneItem

getIDArray(ArrayList<? extends IDd>) - Static method in class org.catacomb.util.DocdUtils

getIDArrayList(ArrayList<? extends IDd>) - Static method in class org.catacomb.util.DocdUtils

getIdentifiedComponentMap() - Method in class org.catacomb.druid.build.DruidTargetStore

getIdentifiedComponentMap() - Method in class org.catacomb.druid.build.GUIStore

getIdentifiedComponents() - Method in class org.catacomb.druid.build.Context

getIdentifiedComponents() - Method in class org.catacomb.druid.build.GUIStore

getIdentifierLabels() - Method in interface org.catacomb.interlish.structure.MultiIDLabelled

getIDIndex() - Method in class org.catacomb.numeric.mesh.DifMeshPoint

getIDIndex() - Method in interface org.catacomb.numeric.mesh.MeshPoint

getImage(HashMap<VectorIcon, IconImage>, VectorIcon, int, int) - Method in class org.catacomb.graph.drawing.IconImageCache

getImage(Object) - Static method in class org.catacomb.util.AWTUtil

getImage(Object, double) - Static method in class org.catacomb.util.AWTUtil

getImage32x32(VectorIcon) - Method in class org.catacomb.graph.drawing.IconImageCache

getImage48x48(VectorIcon) - Method in class org.catacomb.graph.drawing.IconImageCache

getImageIcon(String) - Static method in class org.catacomb.icon.IconLoader

getImagePixels() - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Extracts image pixels into byte array "pixels"

getImportDoc(String, String) - Method in class org.catacomb.druid.xtext.base.DocStore

getIncrementRateMatrix(Column) - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

getIndex() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

getIndex() - Method in class org.catacomb.graph.drawing.Shape

getIndex() - Method in class org.catacomb.graph.drawing.ShapePoint

getIndex() - Method in class org.textensor.stochdiff.model.Specie

getIndexedWidths() - Static method in class org.catacomb.graph.gui.DisplayStyleSet

getIndexInArray(String, String[]) - Static method in class org.catacomb.util.ArrayUtil

getIndexOfChild(Object) - Method in class org.catacomb.druid.gui.base.DummyTree

getIndexOfChild(Object, Object) - Method in class org.catacomb.druid.swing.DTreeModel

getIndexOfChild(Object) - Method in class org.catacomb.druid.swing.EmptyTree

getIndexOfChild(Object) - Method in class org.catacomb.druid.util.examples.DemoNode

getIndexOfChild(Object) - Method in class org.catacomb.druid.util.tree.ArrayListNode

getIndexOfChild(Object) - Method in class org.catacomb.druid.xtext.base.DocStore

getIndexOfChild(Object) - Method in class org.catacomb.druid.xtext.base.XTDoc

getIndexOfChild(Object) - Method in interface org.catacomb.interlish.structure.TreeNode

getIndexOfChild(Object) - Method in class org.catacomb.numeric.data.BlockStack

getIndexOfChild(Object) - Method in class org.catacomb.numeric.data.DVector

getIndexOfChild(Object) - Method in class org.catacomb.numeric.data.NumDataStore

getIndexOfChild(Object) - Method in class org.catacomb.numeric.data.StackMultipleSlice

getIndexOfChild(Object) - Method in class org.catacomb.numeric.data.StackSingleSlice

getIndexOfChild(Object) - Method in class org.catacomb.util.StringTree

getIndexOfChild(Object) - Method in class org.catacomb.util.StringTreeLeaf

getIndices(ArrayList<Specie>, ArrayList<? extends SpecieRef>) - Method in class org.textensor.stochdiff.model.Reaction

getIndices(String, String[]) - Method in class org.textensor.stochdiff.numeric.BaseCalc

getInfo() - Method in class org.catacomb.druid.gui.base.DruPanel

getInfo() - Method in class org.catacomb.interlish.content.DocumentedComponent

getInfo() - Method in interface org.catacomb.interlish.structure.Infod

getInfo() - Static method in class org.catacomb.interlish.version.BuildInfo

getInfoAggregator() - Method in class org.catacomb.druid.build.Context

getInfoReceiver() - Method in class org.catacomb.druid.build.DruidTargetStore

getInfoReceiver() - Method in class org.catacomb.druid.build.GUIStore

getInfoReceiver() - Method in interface org.catacomb.druid.build.PanelFactory

getInfoReceiver() - Method in class org.catacomb.druid.gui.base.DruPanel

getInfoReceiver() - Method in interface org.catacomb.interlish.structure.TargetStore

getInitialConditions() - Method in class org.textensor.stochdiff.model.SDRun

getInitialValue() - Method in class org.catacomb.numeric.difnet.model.BasicStructureNode

getInstance() - Static method in class org.catacomb.interlish.report.Focus

getInstance() - Static method in class org.catacomb.interlish.report.Status

getInt(String) - Method in interface org.catacomb.interlish.structure.FlatDataStore

getInt(String, int) - Static method in class org.catacomb.util.NumUtil

getIntArraySize() - Method in class org.catacomb.druid.gui.base.DruDialog

getIntArraySize() - Method in class org.catacomb.druid.gui.base.DruFrame

getIntArraySize() - Method in class org.catacomb.druid.swing.DDialog

getIntArraySize() - Method in class org.catacomb.druid.swing.DFrame

getIntColor() - Method in class org.catacomb.interlish.content.ColorValue

getInteger() - Method in class org.catacomb.interlish.content.IntegerValue

getIntegerImage(Object) - Static method in class org.catacomb.util.AWTUtil

getIntegerImage(Object, double) - Static method in class org.catacomb.util.AWTUtil

getIntegerValueEditor(String) - Method in class org.catacomb.druid.build.DruidTargetStore

getIntegerValueEditor(String) - Method in interface org.catacomb.interlish.structure.TargetStore

getInterestedIn() - Method in class org.catacomb.druid.market.ConsumerAgent

getInterestedIn() - Method in interface org.catacomb.interlish.structure.Dependent

getIntPosition() - Method in class org.catacomb.graph.drawing.Shape

getIntPosition(Position) - Method in class org.catacomb.graph.gui.WorldCanvas

getIntPosition(double, double) - Method in class org.catacomb.graph.gui.WorldTransform

getIntrinsicCurrent(DiffusibleQuantity) - Method in class org.catacomb.numeric.difnet.model.BasicStateLink

getIntrinsicCurrent(DiffusibleQuantity) - Method in interface org.catacomb.numeric.difnet.StateLink

getIntro() - Method in class org.catacomb.interlish.version.BuildInfo

getIntVector(String) - Method in class org.catacomb.numeric.data.DataExtractor

getIntVector() - Method in class org.catacomb.numeric.data.DataSlice

getItemNames() - Method in class org.catacomb.interlish.content.QuantifiedListValue

getItemPath() - Method in class org.catacomb.graph.gui.DataView

getItems(String[]) - Method in class org.catacomb.interlish.content.KeyedList

getItems(ArrayList<String>) - Method in class org.catacomb.interlish.content.KeyedList

getItems() - Method in class org.catacomb.interlish.content.KeyedList

getItems() - Method in class org.catacomb.interlish.content.KeyedMultiList

getItems(String) - Method in class org.catacomb.interlish.content.KeyedMultiList

getItems() - Method in class org.catacomb.interlish.content.QuantifiedListValue

getItems() - Method in class org.catacomb.interlish.content.QuantityList

getIthDouble(int) - Method in class org.catacomb.interlish.content.QuantifiedListValue

getJavaAccessors() - Method in class org.catacomb.act.FieldSignature

getJavaInitializationString(Color) - Static method in class org.catacomb.druid.swing.split.Colors

getJavaSource() - Method in class org.catacomb.act.FieldSignature

getJBox(double) - Method in class org.textensor.stochdiff.numeric.morph.VolumeSlice

getJTextField() - Method in class org.catacomb.druid.swing.DTextField

getKeys() - Method in class org.catacomb.interlish.content.KeyedList

getKeysArray() - Method in class org.catacomb.interlish.content.KeyedList

getLabel() - Method in class org.catacomb.dataview.model.AxisLayout

getLabel() - Method in class org.catacomb.dataview.PlotElement

getLabel() - Method in class org.catacomb.druid.gui.edit.DruButton

getLabel(Object) - Method in class org.catacomb.druid.swing.DCheckboxList

getLabel() - Method in class org.catacomb.druid.swing.DPopLabel

getLabel() - Method in class org.catacomb.interlish.content.DocumentedComponent

getLabel() - Static method in class org.catacomb.interlish.interact.Clipboard

getLabel() - Method in interface org.catacomb.interlish.structure.Labelled

getLabel() - Method in class org.catacomb.numeric.data.DDSubSlice

getLabel() - Method in class org.catacomb.numeric.data.DVector

getLabel() - Method in class org.catacomb.numeric.data.EventSequence

getLabel() - Method in class org.catacomb.numeric.data.StackSlice

getLabel() - Method in class org.catacomb.util.StringTree

getLabel() - Method in class org.catacomb.util.StringTreeLeaf

getLabel() - Method in class org.textensor.stochdiff.neuroml.cable

getLabel() - Method in class org.textensor.stochdiff.neuroml.meta

getLabel() - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

getLabel() - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

getLabel(int) - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

getLabel() - Method in class org.textensor.vis.IcingPoint

getLabellee() - Method in class org.catacomb.dataview.build.Line

getLabelPoint(double[], double[]) - Method in class org.catacomb.graph.gui.Painter

getLabels() - Method in interface org.catacomb.druid.event.OptionsSource

getLabels() - Method in class org.textensor.stochdiff.disc.DiscretizedSpine

getLabels() - Method in class org.textensor.stochdiff.numeric.morph.SpineProfile

getLastSelected() - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

getLastSelected() - Method in class org.catacomb.druid.gui.edit.DruToggleListPanel

getLastSelected() - Method in class org.catacomb.druid.swing.DCheckboxList

getLayoutAlignmentX(Container) - Method in class org.catacomb.druid.swing.split.SplitterLayout

Tells the caller that we prefer to be centered

getLayoutAlignmentY(Container) - Method in class org.catacomb.druid.swing.split.SplitterLayout

Tells the caller that we prefer to be centered

getLeftMargin() - Method in class org.catacomb.graph.gui.WorldTransform

getLength() - Method in class org.textensor.stochdiff.numeric.morph.TriangleStrip

getLens() - Method in class org.textensor.vis.VolElt

getLevel() - Method in class org.catacomb.druid.guimodel.LogEntry

getLevel() - Method in interface org.catacomb.interlish.structure.InfoMessage

getLimitBox() - Method in class org.catacomb.dataview.DataPlotPainter

getLimitBox() - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

getLimitBox() - Method in class org.catacomb.dataview.formats.MeshSummary

getLimitBox() - Method in class org.catacomb.dataview.formats.PolyLineHandler

getLimitBox() - Method in class org.catacomb.dataview.formats.SWCDisplay

getLimitBox() - Method in class org.catacomb.dataview.formats.TableDataHandler

getLimitBox() - Method in class org.catacomb.dataview.Plot

getLimitBox() - Method in class org.catacomb.graph.arbor.SegmentGraphPainter

getLimitBox(Painter) - Method in class org.catacomb.graph.arbor.SegmentGraphPainter

getLimitBox() - Method in class org.catacomb.graph.arbor.SegmentGraphVE

getLimitBox(Painter) - Method in class org.catacomb.graph.arbor.SegmentGraphVE

getLimitBox(Painter) - Method in interface org.catacomb.graph.gui.BuildPaintInstructor

getLimitBox() - Method in class org.catacomb.graph.gui.CanvasTest

getLimitBox() - Method in class org.catacomb.graph.gui.Demo1

getLimitBox() - Method in interface org.catacomb.graph.gui.PaintInstructor

getLimitBox() - Method in class org.catacomb.graph.gui.SpriteMoviePainter

getLimitBox() - Method in class org.catacomb.graph.gui.ZoneDemo

getLimitBox(Painter) - Method in class org.catacomb.graph.gui.ZoneDemo

getLimitBox() - Method in class org.catacomb.numeric.data.EventSequence

getLimits() - Method in class org.catacomb.dataview.display.ViewConfig

getLimits() - Method in class org.catacomb.graph.arbor.SegmentGraph

getLimits() - Method in interface org.catacomb.interlish.structure.Bounded

getLineBlockX() - Method in interface org.catacomb.interlish.structure.LineBlock

getLineBlockYs() - Method in interface org.catacomb.interlish.structure.LineBlock

getLineColor() - Method in class org.catacomb.datalish.SpritePart

getLineColor() - Method in class org.catacomb.graph.drawing.Shape

getLineColor() - Method in class org.catacomb.graph.gui.DisplayStyleSet

getLineColor() - Method in class org.catacomb.graph.gui.SimpleVectorSprite

getLineColor() - Method in class org.catacomb.interlish.content.RShape

getLineColor() - Method in interface org.catacomb.interlish.content.VectorSprite

getLineColor() - Method in class org.catacomb.numeric.data.XYVectorSprite

getLineCount() - Method in interface org.catacomb.interlish.structure.LineBlock

getLineLength() - Method in interface org.catacomb.interlish.structure.LineBlock

getLineNames() - Method in interface org.catacomb.interlish.structure.GridDataSource

getLines() - Method in interface org.catacomb.interlish.structure.GridDataSource

getLineStyleIndex() - Method in class org.catacomb.graph.gui.DisplayStyleSet

getLineWidth() - Method in class org.catacomb.graph.drawing.Shape

getLineWidth() - Method in class org.catacomb.graph.gui.DisplayStyleSet

getLineWidth() - Method in class org.catacomb.interlish.content.RShape

getLineWidthIndex() - Method in class org.catacomb.graph.gui.DisplayStyleSet

getLinkee() - Method in class org.catacomb.druid.xtext.base.WordBlock

getLinks() - Method in class org.catacomb.numeric.difnet.model.BasicNetState

getLinks() - Method in class org.catacomb.numeric.difnet.model.BasicNetStructure

getLinks() - Method in interface org.catacomb.numeric.difnet.NetState

gets the links in hte netowork which take part in the diffusion calculation.

getLinks() - Method in interface org.catacomb.numeric.difnet.NetStructure

gets the properties of the links in the network which take part in the diffusion calculation.

getList(XType) - Method in class org.catacomb.druid.xtext.data.PageDataStore

getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class org.catacomb.druid.swing.CheckListCellRenderer

getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class org.catacomb.druid.swing.DListColorRenderer

getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class org.catacomb.druid.swing.DListProgressRenderer

getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class org.catacomb.druid.swing.DListQuantityRenderer

getLists() - Method in class org.catacomb.druid.xtext.data.PageDataStore

getLoader() - Method in interface org.catacomb.be.Instantiator

getLoader() - Method in class org.catacomb.interlish.reflect.ClassInstantiator

getLocalDelta(TreePoint, TreePoint) - Method in class org.textensor.stochdiff.disc.Resolution

getLocalInfo() - Method in class org.catacomb.act.FieldSignature

getLocation() - Method in class org.catacomb.druid.gui.base.DruAutonomousDialog

getLocation() - Method in class org.catacomb.druid.gui.base.DruDialog

getLocation() - Method in class org.catacomb.druid.gui.base.DruEditorWindow

getLocation() - Method in class org.catacomb.druid.gui.base.DruFrame

getLocation() - Method in class org.catacomb.druid.gui.base.DruPanel

getLocation() - Method in interface org.catacomb.interlish.structure.Dialog

getLocation() - Method in interface org.catacomb.interlish.structure.FrameShowable

getLogger() - Method in class org.catacomb.druid.load.DruidAppBase

getLogHTMLTemplate() - Method in class org.catacomb.druid.gui.edit.DruLogPanel

getMagic() - Method in interface org.catacomb.dataview.formats.DataHandler

getMagic() - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

getMagic() - Method in class org.catacomb.dataview.formats.MeshSummary

getMagic() - Method in class org.catacomb.dataview.formats.PolyLineHandler

getMagic() - Method in class org.catacomb.dataview.formats.SWCDisplay

getMagic() - Method in class org.catacomb.dataview.formats.TableDataHandler

getMain() - Method in class org.catacomb.dataview.read.BaseContentReader

getMain() - Method in interface org.catacomb.dataview.read.ContentReader

getMain() - Method in class org.catacomb.dataview.read.CustomJarContentReader

getMain() - Method in class org.catacomb.dataview.read.CustomJarReader

getMain() - Method in class org.catacomb.dataview.read.NumericContentReader

getMain() - Method in class org.catacomb.dataview.read.XMLContentReader

getMainFrame() - Method in class org.catacomb.druid.gui.base.DruEditorWindow

getMainPanel() - Method in class org.catacomb.druid.build.Druid

getMainPanel() - Method in class org.catacomb.druid.gui.base.PanelPack

getMarked() - Method in class org.catacomb.numeric.data.DataItem

getMarked() - Method in class org.catacomb.numeric.data.DataSetArray

getMarked() - Method in class org.catacomb.numeric.data.FloatScalar

getMarked() - Method in class org.catacomb.numeric.data.FloatVector

getMarked() - Method in class org.catacomb.numeric.data.NumDataSet

getMarkers() - Method in class org.catacomb.datalish.SpriteData

getMarketplace() - Method in class org.catacomb.druid.build.Context

getMarketplace(String) - Method in class org.catacomb.druid.build.Context

getMarketplace() - Method in class org.catacomb.druid.build.DruidTargetStore

getMarketplace() - Method in class org.catacomb.druid.build.GUIStore

getMarketplace() - Method in interface org.catacomb.interlish.structure.TargetStore

getMatches(HashMap<String, int[]>, String) - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

getMax() - Method in class org.catacomb.dataview.model.AxisLayout

getMaxAspectRatio() - Method in class org.textensor.stochdiff.model.Discretization

getMaximumSize() - Method in class org.catacomb.druid.swing.DDotsPanel

getMaximumSize() - Method in class org.catacomb.druid.swing.DHRPanel

getMaxValue() - Method in interface org.catacomb.dataview.formats.DataHandler

getMaxValue() - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

getMaxValue() - Method in class org.catacomb.dataview.formats.MeshSummary

getMaxValue() - Method in class org.catacomb.dataview.formats.PolyLineHandler

getMaxValue() - Method in class org.catacomb.dataview.formats.SWCDisplay

getMaxValue() - Method in class org.catacomb.dataview.formats.TableDataHandler

getMediumSource() - Static method in class org.catacomb.report.E

getMenuOptions() - Method in interface org.catacomb.druid.swing.Menued

Each option is a string, and the list may not be sorted.

getMesh() - Method in class org.catacomb.dataview.formats.MeshDataReader

getMesh() - Method in interface org.catacomb.interlish.structure.MeshBuilder

getMesh() - Method in class org.catacomb.numeric.mesh.DifMeshBuilder

getMetaMain() - Static method in class org.catacomb.serial.jar.CustomJar

getMetaMime() - Static method in class org.catacomb.serial.jar.CustomJar

getMethod(String) - Method in class org.catacomb.act.Classdef

getMethodID() - Method in class org.catacomb.act.MethodStub

getMin() - Method in class org.catacomb.dataview.model.AxisLayout

getMinimalDataSet(String) - Method in class org.catacomb.dataview.DataviewController

getMinimumSize() - Method in class org.catacomb.druid.swing.DDotsPanel

getMinimumSize() - Method in class org.catacomb.druid.swing.DFloatSlider

getMinimumSize() - Method in class org.catacomb.druid.swing.DHRPanel

getMinimumSize() - Method in class org.catacomb.druid.swing.DSlider

getMinimumSize() - Method in class org.catacomb.druid.swing.split.DSplitterSpace

getMinValue() - Method in interface org.catacomb.dataview.formats.DataHandler

getMinValue() - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

getMinValue() - Method in class org.catacomb.dataview.formats.MeshSummary

getMinValue() - Method in class org.catacomb.dataview.formats.PolyLineHandler

getMinValue() - Method in class org.catacomb.dataview.formats.SWCDisplay

getMinValue() - Method in class org.catacomb.dataview.formats.TableDataHandler

getMnemonic() - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

getModality() - Method in class org.catacomb.druid.market.ConsumerAgent

getModality() - Method in interface org.catacomb.interlish.structure.Dependent

getModel() - Method in class org.catacomb.druid.build.DruidTargetStore

getModel() - Method in interface org.catacomb.interlish.structure.TargetStore

getModelInstantiator() - Method in class org.catacomb.interlish.service.ScriptManager

getMorphMLCell() - Method in class org.textensor.stochdiff.neuroml.morphml

getMorphology() - Method in class org.textensor.stochdiff.model.SDRun

getMoviePath() - Method in class org.catacomb.graph.gui.DataView

getMovies() - Method in class org.catacomb.numeric.data.BlockStack

getMovies() - Method in class org.catacomb.numeric.data.NumDataStore

getMultiIndexes() - Method in class org.catacomb.graph.gui.DataView

getMultiOrdinate() - Method in class org.catacomb.graph.gui.DataView

getMultiStringSelection() - Method in class org.catacomb.druid.gui.edit.DruCheckboxTreePanel

getMultiStringSelection() - Method in class org.catacomb.druid.swing.DCheckboxTree

getN() - Method in class org.textensor.stochdiff.model.SpecieRef

getName() - Method in interface org.catacomb.act.BlockSignature

getName() - Method in class org.catacomb.act.FunctionSignature

getName() - Method in class org.catacomb.act.MethodSignature

getName() - Method in class org.catacomb.datalish.SpriteData

getName() - Method in class org.catacomb.druid.blocks.TableTree

getName() - Method in class org.catacomb.druid.gui.base.DruRoot

getName() - Method in class org.catacomb.druid.manifest.DecFile

getName() - Method in class org.catacomb.druid.swing.DDialog

getName() - Method in class org.catacomb.druid.swing.DFrame

getName() - Method in class org.catacomb.interlish.content.ColorTable

getName() - Method in class org.catacomb.interlish.content.NVPair

getName() - Method in interface org.catacomb.interlish.structure.GridDataSource

getName() - Method in interface org.catacomb.interlish.structure.Named

getName() - Method in interface org.catacomb.interlish.structure.NameValuePairOnly

getName() - Method in class org.catacomb.numeric.data.BlockStack

getName() - Method in class org.catacomb.numeric.data.DataItem

getName() - Method in class org.catacomb.numeric.data.DDSubSlice

getName() - Method in class org.catacomb.numeric.data.DVector

getName() - Method in class org.catacomb.numeric.data.EventSequence

getName() - Method in class org.catacomb.numeric.data.NumDataStore

getName() - Method in class org.catacomb.numeric.data.StackSlice

getName() - Method in class org.catacomb.serial.om.OmAttribute

getName() - Method in class org.catacomb.serial.om.OmElement

getName() - Method in class org.catacomb.serial.quickxml.Element

getName() - Method in class org.catacomb.serial.xml.NamedString

getName() - Method in class org.catacomb.serial.xml.NVPair

getName() - Method in class org.catacomb.serial.xml.XMLToken

getName() - Method in class org.catacomb.util.ColorDef

getName() - Method in class org.textensor.stochdiff.neuroml.cable

getName() - Method in class org.textensor.stochdiff.neuroml.MorphMLCableGroup

getName() - Method in class org.textensor.stochdiff.neuroml.segment

getName() - Method in class org.textensor.xml.Attribute

getName() - Method in class org.textensor.xml.XMLToken

getNames() - Method in class org.catacomb.druid.swing.DPopLabel

getNames() - Method in interface org.catacomb.interlish.structure.MultiNamed

getNames() - Method in class org.catacomb.numeric.data.DDSlice

getNames() - Method in class org.catacomb.numeric.data.NumDataSet

getNamesOfOutputSpecies() - Method in class org.textensor.stochdiff.model.OutputSet

getNameValueItems() - Method in class org.catacomb.interlish.content.QuantifiedListValue

getNanoMolarConcentration() - Method in class org.textensor.stochdiff.model.Concentration

getNanoMolarConcentration() - Method in class org.textensor.stochdiff.model.NanoMolarity

getNanoMolarConcentration() - Method in class org.textensor.stochdiff.model.NumberDensity

getNanoMolarConcentrations(String[]) - Method in class org.textensor.stochdiff.model.ConcentrationSet

getNanoMolarConcentrations() - Method in class org.textensor.stochdiff.numeric.BaseCalc

getNazimuthals() - Method in class org.textensor.stochdiff.disc.CurvedVolumeSlice

getNColor() - Method in class org.catacomb.interlish.content.ColorTable

getNColumn() - Method in class org.catacomb.numeric.data.DataTable

getNeighborCount() - Method in class org.catacomb.numeric.mesh.DifMeshPoint

getNeighborCount() - Method in interface org.catacomb.numeric.mesh.MeshPoint

getNeighbors() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

getNeighbors() - Method in class org.catacomb.numeric.mesh.DifMeshPoint

getNeighbors() - Method in interface org.catacomb.numeric.mesh.MeshPoint

getNeighbors() - Method in class org.textensor.stochdiff.model.MorphPoint

getNeighbors() - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

getNel() - Method in class org.textensor.stochdiff.numeric.StaticCalc

getNElements() - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

getNEvent() - Method in class org.catacomb.numeric.data.EventSequence

getNewName(int[], String) - Static method in class org.catacomb.druid.dialog.Dialoguer

getNewName(int[], String, String) - Static method in class org.catacomb.druid.dialog.Dialoguer

getNewName(int[], String, String) - Method in class org.catacomb.druid.dialog.NamingDialogController

getNewRolePlayer(String, String) - Method in class org.catacomb.druid.load.DruidContentLoader

getNextWordBlock() - Method in class org.catacomb.druid.xtext.base.TextBlock

getNextWritePosition() - Method in class org.catacomb.movie.gif.ByteAccumulator

getNFrame() - Method in class org.catacomb.graph.gui.MovieDisplay

getNFrame() - Method in interface org.catacomb.interlish.structure.MovieOperator

getNFrames() - Method in interface org.catacomb.graph.gui.MoviePaintInstructor

getNFrames() - Method in class org.catacomb.graph.gui.SpriteMoviePainter

getNLine() - Method in interface org.catacomb.interlish.structure.GridDataSource

getNode(int) - Method in class org.catacomb.numeric.difnet.model.BasicNetState

getNode(int) - Method in interface org.catacomb.numeric.difnet.NetState

getNodeA() - Method in class org.catacomb.numeric.difnet.model.BasicStateLink

getNodeA() - Method in class org.catacomb.numeric.difnet.model.BasicStructureLink

getNodeA() - Method in interface org.catacomb.numeric.difnet.StateLink

getNodeA() - Method in interface org.catacomb.numeric.difnet.StructureLink

getNodeB() - Method in class org.catacomb.numeric.difnet.model.BasicStateLink

getNodeB() - Method in class org.catacomb.numeric.difnet.model.BasicStructureLink

getNodeB() - Method in interface org.catacomb.numeric.difnet.StateLink

getNodeB() - Method in interface org.catacomb.numeric.difnet.StructureLink

getNodes() - Method in class org.catacomb.numeric.difnet.calc.OrderedNetMap

getNodes() - Method in class org.catacomb.numeric.difnet.model.BasicNetState

getNodes() - Method in class org.catacomb.numeric.difnet.model.BasicNetStructure

getNodes() - Method in interface org.catacomb.numeric.difnet.NetState

gets the nodes in the network which take part in the diffusion process.

getNodes() - Method in interface org.catacomb.numeric.difnet.NetStructure

gets the properties of the nodes in the network which take part in the diffusion process.

getNonTrivialLabel() - Method in class org.catacomb.interlish.content.DocumentedComponent

getNormal(Position[]) - Static method in class org.textensor.stochdiff.geom.Geom

getNormalForeground() - Method in class org.catacomb.graph.gui.BaseCanvas

getNormals() - Method in class org.textensor.stochdiff.numeric.morph.TrianglesSet

getNorms() - Method in class org.textensor.vis.VolElt

getNPoint() - Method in interface org.catacomb.datalish.SpriteAnimation

getNPoint() - Method in interface org.catacomb.interlish.structure.GridDataSource

getNPoint() - Method in class org.catacomb.numeric.data.DDSubSlice

getNPoint() - Method in class org.catacomb.numeric.data.DoubleArray

getNPoint() - Method in class org.catacomb.numeric.data.DVector

getNPoint() - Method in interface org.catacomb.numeric.data.NumVector

getNPoint() - Method in class org.catacomb.numeric.data.StackSlice

getNReaction() - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

getNSelectable() - Method in interface org.catacomb.interlish.structure.Subselectable

getNSpec() - Method in class org.textensor.stochdiff.numeric.StaticCalc

getNSpecies() - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

getNStim() - Method in class org.textensor.stochdiff.numeric.chem.StimulationTable

getNumAttributes() - Method in class org.catacomb.serial.xml.XMLToken

getNumAttributes() - Method in class org.textensor.xml.XMLToken

getNumberOfOutputSpecies() - Method in class org.textensor.stochdiff.model.OutputSet

getNumDataItem(String) - Method in class org.catacomb.numeric.data.NDSAccessor

getNumDataItem(String) - Method in class org.catacomb.numeric.data.NumDataStore

getNvert() - Method in class org.textensor.vis.VolElt

getObject() - Method in class org.catacomb.interlish.content.ExternValue

getObject(String) - Method in interface org.catacomb.interlish.structure.FlatDataStore

getObjectItemArray() - Method in class org.catacomb.interlish.content.QuantityList

getObjectPath(String, boolean) - Method in class org.catacomb.druid.gui.base.DummyTree

getObjectPath(String, boolean) - Method in class org.catacomb.druid.swing.EmptyTree

getObjectPath(String, boolean) - Method in class org.catacomb.druid.util.tree.RelationTree

getObjectPath(String, boolean) - Method in class org.catacomb.druid.xtext.base.DocStore

getObjectPath(String, boolean) - Method in interface org.catacomb.interlish.structure.Tree

getObjectPath(String) - Method in class org.catacomb.numeric.data.NDSAccessor

getObjectPath(String, boolean) - Method in class org.catacomb.numeric.data.NumDataStore

getObjectPath(String, boolean) - Method in class org.catacomb.util.StringTree

getOCF() - Method in class org.catacomb.interlish.content.RShape

getOffsetChildren() - Method in class org.textensor.stochdiff.model.MorphPoint

getOffsetChildren() - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

getOmAttribute(String) - Method in class org.catacomb.serial.om.OmElement

getOpenTagString() - Method in class org.catacomb.serial.xml.XMLToken

getOpenTagString() - Method in class org.textensor.xml.XMLToken

getOpposite() - Method in class org.catacomb.interlish.content.Heading

getOptions() - Method in interface org.catacomb.druid.event.OptionsSource

getOrdinates() - Method in class org.catacomb.graph.gui.DataView

getOrdinates(NumVector) - Method in class org.catacomb.numeric.data.NDSAccessor

getOrdinates(NumVector) - Method in class org.catacomb.numeric.data.NumDataStore

getOrientation() - Method in class org.catacomb.druid.swing.split.DSplitterBar

getOrientation() - Method in class org.catacomb.druid.swing.split.SplitterLayout

getOrMake(String) - Method in class org.catacomb.interlish.content.KeyedList

getOutcome() - Method in interface org.catacomb.interlish.structure.Transitional

getOutputScheme() - Method in class org.textensor.stochdiff.model.SDRun

getPackage(String) - Static method in class org.catacomb.util.PathUtil

getPackagePath(String) - Static method in class org.catacomb.util.PathUtil

getPaddedBytes(String) - Static method in class org.catacomb.util.Base64

getPage(String) - Method in interface org.catacomb.interlish.structure.PageSupplier

getPageDataStore() - Method in class org.catacomb.druid.xtext.base.XTDoc

getPainter() - Method in class org.catacomb.graph.gui.WorldCanvas

getPanel() - Method in class org.catacomb.druid.gui.base.DruAutonomousPanel

getPanel() - Method in class org.catacomb.druid.gui.base.DruInsert

getPanel() - Method in interface org.catacomb.druid.gui.base.PanelWrapper

getPanel() - Method in class org.textensor.vis.Icing3DViewer

getPanel() - Method in class org.textensor.vis.SceneGraphViewer

getPanel() - Method in interface org.textensor.vis.Visualizer

getPanelCount() - Method in class org.catacomb.druid.blocks.MultiPanel

getParagraph() - Static method in class org.catacomb.druid.xtext.StandardGuises

getParent() - Method in class org.catacomb.druid.gui.base.DummyTree

getParent() - Method in class org.catacomb.druid.swing.EmptyTree

getParent() - Method in class org.catacomb.druid.util.examples.DemoNode

getParent() - Method in class org.catacomb.druid.util.tree.ArrayListNode

getParent(String) - Method in class org.catacomb.druid.util.tree.RelationNode

getParent() - Method in class org.catacomb.druid.xtext.base.DocStore

getParent() - Method in class org.catacomb.druid.xtext.base.MarkerBlock

getParent() - Method in class org.catacomb.druid.xtext.base.XTDoc

getParent() - Method in class org.catacomb.graph.drawing.Shape

getParent() - Method in class org.catacomb.graph.drawing.ShapePoint

getParent() - Method in interface org.catacomb.interlish.structure.Child

getParent() - Method in interface org.catacomb.interlish.structure.Socket

getParent() - Method in interface org.catacomb.interlish.structure.TreeNode

getParent() - Method in class org.catacomb.numeric.data.BlockStack

getParent() - Method in class org.catacomb.numeric.data.DVector

getParent() - Method in class org.catacomb.numeric.data.NumDataStore

getParent() - Method in class org.catacomb.numeric.data.StackSlice

getParent() - Method in class org.catacomb.util.StringTree

getParent() - Method in class org.catacomb.util.StringTreeLeaf

getParent() - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

getParent() - Method in class org.textensor.vis.IcingPoint

getParentID() - Method in interface org.catacomb.interlish.structure.Socket

getParentID() - Method in class org.textensor.stochdiff.neuroml.segment

getParentTable() - Method in interface org.catacomb.interlish.structure.Table

getParticleCount() - Method in class org.textensor.stochdiff.numeric.BaseCalc

getParticleCount() - Method in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

getParticleCount() - Method in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

getParticleCount() - Method in class org.textensor.stochdiff.numeric.pool.ForwardEulerPoolCalc

getParticleCount() - Method in class org.textensor.stochdiff.numeric.pool.ForwardExponentialPoolCalc

getParticleCount() - Method in class org.textensor.stochdiff.numeric.pool.ImplicitEulerPoolCalc

getParticleCount() - Method in class org.textensor.stochdiff.numeric.pool.RungeKutta4PoolCalc

getParticleCount() - Method in class org.textensor.stochdiff.numeric.pool.SemiImplicitEulerPoolCalc

getParticleCount() - Method in class org.textensor.stochdiff.numeric.StaticCalc

getParticleCount() - Method in class org.textensor.stochdiff.numeric.tmp.Tmp1A

getParticleCount() - Method in class org.textensor.stochdiff.SDCalc

getParts() - Method in class org.catacomb.datalish.SpriteData

getPath() - Method in class org.catacomb.druid.build.GUIPath

getPath() - Method in class org.catacomb.druid.manifest.DecFile

getPath() - Method in interface org.catacomb.interlish.structure.Pathed

getPath(Object) - Method in class org.catacomb.numeric.data.NumDataStore

getPath() - Method in class org.catacomb.util.StringTree

getPathElements(File, File) - Static method in class org.catacomb.util.FileUtil

getPathTo(Related) - Method in class org.catacomb.druid.util.tree.RelationTree

getPCBoard(String) - Method in class org.catacomb.druid.market.HookupBoard

getPeer() - Method in class org.catacomb.druid.util.tree.RelationNode

getPeerEquivalentChild(RelationNode) - Method in class org.catacomb.druid.util.tree.RelationNode

getPerElementCouplingConstants() - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

getPerElementNeighbors() - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

getPickablePoint() - Method in class org.catacomb.graph.drawing.ShapePoint

getPickTransform(int, int) - Method in class org.textensor.vis.SceneGraphViewer

getPicoMoleSurfaceDensity() - Method in class org.textensor.stochdiff.model.PicoSD

getPicoMoleSurfaceDensity() - Method in class org.textensor.stochdiff.model.SurfaceDensity

getPicoSurfaceDensities(String[]) - Method in class org.textensor.stochdiff.model.SurfaceDensitySet

getPivotNames() - Method in class org.catacomb.druid.util.tree.RelationTree

getPivotNames() - Method in interface org.catacomb.interlish.structure.PivotedTree

getPivotRelation() - Method in class org.catacomb.druid.util.tree.RelationTree

getPixelArea() - Method in class org.catacomb.graph.gui.Painter

getPixelArea() - Method in class org.catacomb.graph.gui.WorldTransform

getPixelSize() - Method in class org.catacomb.graph.gui.Painter

getPixelSize() - Method in class org.catacomb.graph.gui.WorldTransform

getPlacement() - Method in class org.catacomb.datalish.SpritePlacement

getPlacements() - Method in class org.catacomb.datalish.SceneConfig

getPlainText() - Method in class org.catacomb.druid.guimodel.Log

getPlainText() - Method in class org.catacomb.druid.guimodel.LogEntry

getPlainText() - Method in interface org.catacomb.interlish.structure.InfoLog

getPlainText() - Method in interface org.catacomb.interlish.structure.InfoMessage

getPlotNames() - Method in interface org.catacomb.dataview.formats.DataHandler

getPlotNames() - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

getPlotNames() - Method in class org.catacomb.dataview.formats.MeshSummary

getPlotNames() - Method in class org.catacomb.dataview.formats.PolyLineHandler

getPlotNames() - Method in class org.catacomb.dataview.formats.SWCDisplay

getPlotNames() - Method in class org.catacomb.dataview.formats.TableDataHandler

getPlottables() - Method in class org.catacomb.dataview.model.LineGraph

getPoint(int) - Method in class org.catacomb.numeric.mesh.DifMesh

getPoint(Object) - Method in class org.catacomb.numeric.mesh.DifMeshBuilder

getPointCount() - Method in class org.catacomb.graph.arbor.SegmentGraph

getPointPainter() - Method in class org.catacomb.graph.gui.Painter

getPoints() - Method in class org.catacomb.graph.arbor.SegmentGraph

getPoints() - Method in class org.catacomb.graph.drawing.Shape

getPoints() - Method in class org.catacomb.numeric.mesh.DifMesh

getPoissonGenerator() - Static method in class org.textensor.stochdiff.numeric.stochastic.InterpolatingStepGenerator

getPopulations() - Method in class org.textensor.stochdiff.numeric.morph.SpineDistribution

getPort() - Method in class org.catacomb.numeric.difnet.model.PointRecorder

getPort() - Method in class org.catacomb.numeric.difnet.model.PointStim

getPosition() - Method in class org.catacomb.be.Placement

getPosition() - Method in class org.catacomb.datalish.SpriteMarker

getPosition() - Method in class org.catacomb.datalish.SpritePlacement

getPosition() - Method in class org.catacomb.graph.drawing.Shape

getPosition() - Method in class org.catacomb.graph.drawing.ShapePoint

getPosition() - Method in class org.catacomb.graph.gui.PickablePoint

getPositions() - Method in class org.textensor.stochdiff.numeric.morph.TrianglesSet

getPossibleAbscissae() - Method in class org.catacomb.numeric.data.NumDataStore

getPreferredConfiguration() - Static method in class org.textensor.vis.SceneGraphViewer

getPreferredScrollableViewportSize() - Method in class org.catacomb.druid.gui.base.DruBrowserPanel

getPreferredScrollableViewportSize() - Method in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

getPreferredScrollableViewportSize() - Method in class org.catacomb.druid.swing.DScrollablePanel

getPreferredScrollableViewportSize() - Method in class org.catacomb.druid.swing.DTextCanvas

getPreferredSize() - Method in class org.catacomb.druid.gui.base.DruPanel

getPreferredSize() - Method in class org.catacomb.druid.swing.DDotsPanel

getPreferredSize() - Method in class org.catacomb.druid.swing.DFloatSlider

getPreferredSize() - Method in class org.catacomb.druid.swing.DHRPanel

getPreferredSize() - Method in class org.catacomb.druid.swing.DPopLabel

getPreferredSize() - Method in class org.catacomb.druid.swing.DSlider

getPreferredSize() - Method in class org.catacomb.druid.swing.DTextCanvas

getPreferredSize() - Method in class org.catacomb.druid.swing.split.DSplitterSpace

getPreferredSize() - Method in class org.catacomb.graph.gui.DataDisplay

getPreferredSize() - Method in class org.catacomb.graph.gui.MovieDisplay

getPreferredSize() - Method in class org.catacomb.icon.splash.SplashWindow

getPrefixedInfo(String) - Method in class org.catacomb.act.FieldSignature

getPressRegion() - Method in class org.catacomb.druid.swing.dnd.RegionStore

getPreviousTime() - Method in class org.catacomb.be.TimePoint

getPreviousWordBlock() - Method in class org.catacomb.druid.xtext.base.TextBlock

getProcessState() - Method in interface org.catacomb.interlish.structure.StateProcess

getProductIndices() - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

getProductionColumn(Column) - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

getProductionMatrix() - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

getProductStochiometry() - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

getProfile() - Method in class org.textensor.stochdiff.model.SpineType

getProfile() - Method in class org.textensor.stochdiff.numeric.morph.SpinePopulation

getProgress() - Method in interface org.catacomb.interlish.structure.Progressed

getProgressDescription() - Method in class org.catacomb.be.TimePoint

getProgressDescription() - Method in interface org.catacomb.interlish.structure.Progressed

getProgressFraction() - Method in class org.catacomb.be.TimePoint

getProgressLogger() - Static method in class org.catacomb.druid.dialog.Dialoguer

getProgressReport(String) - Method in class org.catacomb.druid.build.DruidTargetStore

getProgressReport(String) - Method in interface org.catacomb.interlish.structure.TargetStore

getProjectionMatrix() - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

getProjectionMatrix() - Method in class org.catacomb.graph.gui.DrawingCanvas

getProjectionMatrix() - Method in class org.catacomb.graph.gui.WorldCanvas

getProjectionMatrix() - Method in class org.catacomb.graph.gui.WorldTransform

getPropertyType() - Method in class org.catacomb.druid.xtext.data.XTypeStore

getProtoNeighbors() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

getProtoPoints() - Method in class org.catacomb.graph.drawing.Shape

getProviderOf(String) - Method in class org.catacomb.druid.load.DruidContentLoader

getProviderOf(String) - Method in interface org.catacomb.interlish.service.ContentLoader

getProximal() - Method in class org.textensor.stochdiff.neuroml.segment

getQuantity(V) - Method in class org.catacomb.interlish.content.QuantityList

getQuantityNonGeneric(Object) - Method in class org.catacomb.interlish.content.QuantityList

getQuotedText(String, String) - Method in class org.catacomb.interlish.version.BuildInfo

getR() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

getR() - Method in class org.catacomb.numeric.mesh.DifMeshPoint

getR() - Method in interface org.catacomb.numeric.mesh.MeshPoint

getR() - Method in class org.textensor.stochdiff.neuroml.MorphMLPoint

getR() - Method in class org.textensor.vis.IcingPoint

getRadialSplit(double, double[]) - Method in class org.textensor.stochdiff.disc.CurvedVolumeSlice

getRadialSplit(double, int, double[]) - Method in class org.textensor.stochdiff.disc.CurvedVolumeSlice

getRadii(int) - Method in class org.textensor.stochdiff.disc.CurvedVolumeSlice

getRadius() - Method in class org.catacomb.datalish.Box

getRadius() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

getRadius() - Method in class org.catacomb.numeric.difnet.model.BasicStructureNode

getRadius() - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

getRAElement(int, int) - Method in class org.textensor.stochdiff.disc.CurvedVolumeSlice

getRange() - Method in class org.catacomb.graph.gui.PickablePoint

getRangeMax() - Method in class org.catacomb.interlish.content.ColorTable

getRangeMin() - Method in class org.catacomb.interlish.content.ColorTable

getRateColumn(Column) - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

getRates() - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

getRawSibling(int, String, String) - Method in class org.textensor.stochdiff.ResultWriter

getReactantIndices() - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

getReactantStochiometry() - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

getReactionList() - Method in class org.textensor.stochdiff.model.ReactionScheme

getReactionScheme() - Method in class org.textensor.stochdiff.model.SDRun

getReactionTable() - Method in class org.textensor.stochdiff.numeric.BaseCalc

getReader(byte[], FUImportContext) - Static method in class org.catacomb.dataview.read.Importer

getReader(File) - Static method in class org.catacomb.dataview.read.Importer

getReader(URL) - Static method in class org.catacomb.dataview.read.Importer

getReader(byte[], FUImportContext) - Method in class org.catacomb.dataview.read.ResourceImporter

getRecentPaths() - Method in class org.catacomb.druid.load.DruidAppBase

getRecentPaths() - Method in class org.catacomb.druid.load.Settings

getRecentPaths() - Static method in class org.catacomb.interlish.service.AppPersist

getRecentPaths() - Method in interface org.catacomb.interlish.service.AppPersistProvider

getRecorderLabels() - Method in class org.catacomb.numeric.difnet.model.BasicNetRecorder

getReExtendedName(String, String) - Method in class org.catacomb.dataview.read.FUImportContext

getRef() - Method in class org.catacomb.druid.swing.dnd.Region

getRef() - Method in class org.catacomb.druid.swing.ToggleItem

getRef() - Method in class org.catacomb.graph.drawing.VectorIcon

getRef() - Method in interface org.catacomb.graph.gui.Pickable

getRef() - Method in class org.catacomb.graph.gui.PickablePoint

getRef() - Method in class org.catacomb.graph.gui.PickableRegion

getReferencePoint() - Method in class org.catacomb.graph.gui.PickableRegion

getRegion() - Method in class org.textensor.stochdiff.model.ConcentrationSet

getRegion() - Method in class org.textensor.stochdiff.model.OutputSet

getRegion() - Method in class org.textensor.stochdiff.model.SurfaceDensitySet

getRegion() - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

getRegionConcentrations(String, String[]) - Method in class org.textensor.stochdiff.model.InitialConditions

getRegionConcentrations() - Method in class org.textensor.stochdiff.numeric.BaseCalc

getRegionIndexes() - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

getRegionLabels() - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

getRegions() - Method in class org.textensor.stochdiff.disc.DiscretizedSpine

getRegions() - Method in class org.textensor.stochdiff.numeric.morph.SpineProfile

getRegionSurfaceDensities(String, String[]) - Method in class org.textensor.stochdiff.model.InitialConditions

getRegionSurfaceDensities() - Method in class org.textensor.stochdiff.numeric.BaseCalc

getRegionTag() - Method in class org.catacomb.graph.gui.PickableRegion

getRelatedSet() - Static method in class org.catacomb.druid.util.examples.TreeDemo

getRelations() - Method in class org.catacomb.druid.xtext.data.PageDataStore

getRelationships() - Method in class org.catacomb.druid.util.examples.TreeItem

getRelationships() - Method in interface org.catacomb.interlish.structure.Related

getRelationType() - Method in class org.catacomb.druid.xtext.data.XRelation

getRelationTypes() - Method in class org.catacomb.druid.xtext.data.XTypeStore

getRelative(String) - Method in class org.catacomb.dataview.read.CustomJarContentReader

getRelative(String) - Method in class org.catacomb.dataview.read.CustomJarReader

getRelative(String) - Method in class org.catacomb.dataview.read.FUImportContext

getRelative(String) - Method in class org.catacomb.dataview.read.JarImportContext

getRelative(String) - Method in interface org.catacomb.interlish.resource.ImportContext

getRelativeDirectory(File, File) - Static method in class org.catacomb.util.FileUtil

getRelativeDirectory(File, File) - Static method in class org.textensor.util.FileUtil

getRelativeFile(String) - Method in class org.catacomb.dataview.read.FileImportContext

getRelativeFile(String) - Method in class org.catacomb.dataview.read.FUImportContext

getRelativeFile(String) - Method in class org.catacomb.dataview.read.JarImportContext

getRelativeReader(String) - Method in class org.catacomb.dataview.read.FileImportContext

getRelativeReader(String) - Method in class org.catacomb.dataview.read.FUImportContext

getRelativeReader(String) - Method in class org.catacomb.dataview.read.JarImportContext

getRelativeResource(Object, String) - Static method in class org.catacomb.interlish.util.JUtil

getRelativeResource(String) - Static method in class org.catacomb.interlish.util.JUtil

getRelativeResource(Logger, Class, String) - Static method in class org.catacomb.interlish.util.JUtil

getRelativeToBoxCenter(double[]) - Method in class org.catacomb.be.Position

getRelativeXYLocation() - Method in interface org.catacomb.interlish.structure.Socket

getRelType() - Method in class org.catacomb.druid.xtext.data.XTypeStore

getRemeshMap() - Method in class org.catacomb.numeric.mesh.DifMesh

getRepaintStatus() - Method in class org.catacomb.graph.gui.MouseHandler

getResolutionHM() - Method in class org.textensor.stochdiff.model.Discretization

getResource(String, String) - Method in class org.catacomb.druid.load.DruidContentLoader

getResource(String, String) - Method in class org.catacomb.druid.load.DruidResourceLoader

getResource() - Method in class org.catacomb.interlish.resource.Role

getResource(String, String) - Method in interface org.catacomb.interlish.service.ResourceLoader

getResource(String) - Static method in class org.catacomb.interlish.util.JUtil

getResourceDir() - Method in class org.catacomb.serial.om.OmFileReader

getResourceDir() - Method in class org.catacomb.serial.om.OmFileWriter

getResourceImporter() - Static method in class org.catacomb.dataview.read.Importer

getResourceLoader() - Static method in class org.catacomb.interlish.service.ResourceAccess

getResponse(int[], String) - Method in class org.catacomb.druid.dialog.ConfirmationDialogController

getResponse(String, String[]) - Method in class org.catacomb.druid.dialog.QuestionDialogController

getResultData() - Method in interface org.catacomb.interlish.structure.RunProcess

getRevisedRegionConcentrations() - Method in class org.textensor.stochdiff.numeric.BaseCalc

getRevisedRegionSurfaceDensities() - Method in class org.textensor.stochdiff.numeric.BaseCalc

getRo(String, int) - Method in class org.catacomb.druid.blocks.AbstractButton

getRole(String, String) - Method in class org.catacomb.druid.load.RoleMap

getRolePlayer(String, String) - Method in class org.catacomb.druid.load.DruidContentLoader

getRolePlayer(String, String, boolean) - Method in class org.catacomb.druid.load.DruidContentLoader

getRoles() - Method in class org.catacomb.druid.manifest.DecManifest

getRoot() - Method in class org.catacomb.druid.gui.base.DummyTree

getRoot() - Method in class org.catacomb.druid.swing.DTreeModel

getRoot() - Method in class org.catacomb.druid.swing.EmptyTree

getRoot() - Method in class org.catacomb.druid.util.tree.RelationTree

getRoot() - Method in class org.catacomb.druid.xtext.base.DocStore

getRoot() - Method in interface org.catacomb.interlish.structure.Tree

getRoot() - Method in class org.catacomb.numeric.data.NumDataStore

getRoot() - Method in class org.catacomb.util.StringTree

getRootBlock() - Method in class org.catacomb.druid.xtext.base.XTDoc

getRootComponent() - Method in class org.catacomb.druid.build.Druid

getRootDir() - Method in class org.catacomb.interlish.interact.CodgerTask

getRootName(File) - Static method in class org.catacomb.util.FileUtil

getRootName(File) - Static method in class org.textensor.util.FileUtil

getRootPath() - Method in class org.catacomb.druid.manifest.DecManifest

getRootPolicy() - Method in class org.catacomb.druid.gui.base.DummyTree

getRootPolicy() - Method in class org.catacomb.druid.swing.EmptyTree

getRootPolicy() - Method in class org.catacomb.druid.util.tree.RelationTree

getRootPolicy() - Method in class org.catacomb.druid.xtext.base.DocStore

getRootPolicy() - Method in interface org.catacomb.interlish.structure.Tree

getRootPolicy() - Method in class org.catacomb.numeric.data.NumDataStore

getRootPolicy() - Method in class org.catacomb.util.StringTree

getRoots(ArrayList<RelationNode>, String) - Method in class org.catacomb.druid.util.tree.RelationTree

getRotatedPosition(Position, Position) - Method in class org.textensor.stochdiff.geom.GRotation

getRotatedPosition(Position) - Method in class org.textensor.stochdiff.geom.GRotation

getRotatedPosition(Position) - Method in interface org.textensor.stochdiff.geom.Rotation

getRotatedPosition(Position, Position) - Method in interface org.textensor.stochdiff.geom.Rotation

getRotatedVector(Vector) - Method in class org.textensor.stochdiff.geom.GRotation

getRotatedVector(Vector) - Method in interface org.textensor.stochdiff.geom.Rotation

getRow() - Method in interface org.catacomb.interlish.structure.RowPeer

getRow(int) - Method in class org.textensor.stochdiff.numeric.math.Matrix

getRows() - Method in class org.catacomb.numeric.data.DataTable

getRunMappingFor(String) - Method in class org.catacomb.druid.load.DruidContentLoader

getRuntime() - Method in interface org.catacomb.interlish.structure.FSRunnable

getRuntime() - Method in interface org.catacomb.interlish.structure.RunProcess

getScalar(String) - Method in class org.catacomb.numeric.data.DataExtractor

getScalar() - Method in class org.catacomb.numeric.data.DataSlice

getScalar(double) - Method in class org.catacomb.numeric.function.FixedValueScalarFunction

getScalar(double) - Method in class org.catacomb.numeric.function.HoldLastScalarFunction

getScalar(double) - Method in interface org.catacomb.numeric.function.ScalarFunction

getScale() - Method in class org.catacomb.graph.drawing.IconWrapper

getScale() - Method in class org.catacomb.graph.gui.WorldTransform

getScaledBufferedImage(Image, int, int) - Static method in class org.catacomb.util.AWTUtil

getScaleFactors(int) - Method in class org.catacomb.dataview.model.Plottable

getSceneConfig(int) - Method in interface org.catacomb.datalish.SpriteAnimation

getSceneConfig(int) - Method in class org.catacomb.numeric.data.AnimSlice

getSceneGraph() - Method in class org.textensor.vis.SceneGraphBuilder

getSchemaOptions() - Method in class org.catacomb.druid.blocks.TableTree

getScreenPosition() - Method in class org.catacomb.druid.swing.DDropCanvas

getScreenPosition() - Method in class org.catacomb.druid.swing.DTextCanvas

getScreenPosition() - Method in class org.catacomb.druid.xtext.edit.TrashBoard

getScreenPosition() - Method in class org.catacomb.druid.xtext.edit.XTypeTree

getScriptInfo() - Method in class org.catacomb.interlish.service.ScriptManager

getScriptInfo(Object, int) - Method in interface org.catacomb.interlish.service.ScriptSource

getScriptSource(Object, int) - Method in class org.catacomb.interlish.service.ScriptManager

getScrollableBlockIncrement(Rectangle, int, int) - Method in class org.catacomb.druid.gui.base.DruBrowserPanel

getScrollableBlockIncrement(Rectangle, int, int) - Method in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

getScrollableBlockIncrement(Rectangle, int, int) - Method in class org.catacomb.druid.swing.DScrollablePanel

getScrollableBlockIncrement(Rectangle, int, int) - Method in class org.catacomb.druid.swing.DTextCanvas

getScrollableTracksViewportHeight() - Method in class org.catacomb.druid.gui.base.DruBrowserPanel

getScrollableTracksViewportHeight() - Method in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

getScrollableTracksViewportHeight() - Method in class org.catacomb.druid.swing.DScrollablePanel

getScrollableTracksViewportHeight() - Method in class org.catacomb.druid.swing.DTextCanvas

getScrollableTracksViewportWidth() - Method in class org.catacomb.druid.gui.base.DruBrowserPanel

getScrollableTracksViewportWidth() - Method in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

getScrollableTracksViewportWidth() - Method in class org.catacomb.druid.swing.DScrollablePanel

getScrollableTracksViewportWidth() - Method in class org.catacomb.druid.swing.DTextCanvas

getScrollableUnitIncrement(Rectangle, int, int) - Method in class org.catacomb.druid.gui.base.DruBrowserPanel

getScrollableUnitIncrement(Rectangle, int, int) - Method in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

getScrollableUnitIncrement(Rectangle, int, int) - Method in class org.catacomb.druid.swing.DScrollablePanel

getScrollableUnitIncrement(Rectangle, int, int) - Method in class org.catacomb.druid.swing.DTextCanvas

getSeed() - Static method in class org.catacomb.numeric.math.Random

getSeed() - Static method in class org.textensor.stochdiff.numeric.math.NRRandom

getSegments() - Method in class org.textensor.stochdiff.neuroml.cell

getSelected() - Method in class org.catacomb.druid.gui.edit.DruChoice

getSelected() - Method in class org.catacomb.druid.gui.edit.DruRadioButtons

getSelected() - Method in class org.catacomb.druid.swing.DChoice

getSelected() - Method in class org.catacomb.druid.swing.DRadioButtons

getSelected() - Method in interface org.catacomb.interlish.structure.Selector

getSelectedColor() - Static method in class org.catacomb.druid.swing.LAF

getSelectedIndex() - Method in class org.catacomb.druid.gui.edit.DruListPanel

getSelectedIndexes() - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

getSelectedIndexes() - Method in class org.catacomb.druid.gui.edit.DruListPanel

getSelectedIndexes() - Method in class org.catacomb.druid.gui.edit.DruToggleListPanel

getSelectedItem() - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

getSelectedItem() - Method in class org.catacomb.druid.gui.edit.DruListPanel

getSelectedItem() - Method in class org.catacomb.druid.gui.edit.DruToggleListPanel

getSelectedItems() - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

getSelectedItems() - Method in class org.catacomb.druid.gui.edit.DruToggleListPanel

getSelectedName() - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

getSelectedName() - Method in class org.catacomb.druid.gui.edit.DruListPanel

getSelectedName() - Method in class org.catacomb.druid.gui.edit.DruToggleListPanel

getSelectedName() - Method in class org.catacomb.druid.swing.DButtonGroup

getSelectedObjects() - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

getSelection() - Method in class org.catacomb.druid.gui.edit.DruTreePanel

getSelectionModel() - Method in class org.catacomb.druid.swing.DCheckboxTree

getSelectionType() - Method in class org.catacomb.druid.gui.edit.DruCheckboxTreePanel

getSelectionType() - Method in class org.catacomb.druid.gui.edit.DruTreePanel

getSelectionType() - Method in interface org.catacomb.interlish.structure.SelectionSource

getSentence() - Static method in class org.catacomb.druid.xtext.StandardGuises

getSerialization(Object) - Static method in class org.catacomb.serial.xml.XMLWriter

getSerialization(Object) - Static method in class org.textensor.xml.XMLWriter

getSetColorTable(String) - Method in class org.catacomb.graph.gui.DisplayStylesData

getSettings() - Method in class org.catacomb.druid.load.DruidAppBase

getShapes() - Method in class org.textensor.vis.SceneGraphBuilder

getShortID() - Method in class org.catacomb.interlish.content.DocumentedComponent

getShortKeys() - Method in class org.catacomb.interlish.content.KeyedList

getShortKeysArray() - Method in class org.catacomb.interlish.content.KeyedList

getShortSource() - Static method in class org.catacomb.report.E

getShortSource() - Static method in class org.textensor.report.E

getSibling(NumVector, String) - Method in class org.catacomb.numeric.data.NDSAccessor

getSibling(NumVector, String) - Method in class org.catacomb.numeric.data.NumDataStore

getSibling(int, String, String) - Method in class org.textensor.stochdiff.ResultWriter

getSiblingFile(File, String) - Static method in class org.catacomb.util.FileUtil

getSiblingFile(String) - Method in class org.textensor.stochdiff.ResultWriter

getSideArea() - Method in class org.textensor.stochdiff.numeric.morph.CuboidVolumeElement

getSideArea() - Method in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

getSine() - Method in class org.catacomb.be.Direction

getSingletonPack(String) - Method in interface org.catacomb.druid.build.PanelFactory

getSingletonPack(String) - Method in class org.catacomb.druid.gui.base.DruKitPanel

getSize() - Method in class org.catacomb.druid.gui.base.DruAutonomousDialog

getSize() - Method in class org.catacomb.druid.gui.base.DruEditorWindow

getSize() - Method in class org.catacomb.graph.gui.PickablePoint

getSize() - Method in interface org.catacomb.interlish.structure.FrameShowable

getSize() - Method in interface org.catacomb.interlish.structure.Sized

getSize() - Method in class org.catacomb.numeric.data.BlockStack

getSize() - Method in class org.catacomb.numeric.data.StackSlice

getSize() - Method in class org.catacomb.numeric.mesh.DifMesh

getSizeUnit() - Method in interface org.catacomb.interlish.structure.Assembly

getSlashPackage(Object) - Static method in class org.catacomb.util.PathUtil

getSlashPath(TreeNode) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

getSlices() - Method in class org.catacomb.numeric.data.BlockStack

getSlices() - Method in class org.textensor.stochdiff.disc.SegmentSlicer

getSliderValue() - Method in class org.catacomb.druid.swing.DSimpleSlider

getSmoothness() - Method in class org.catacomb.graph.drawing.Shape

getSnapshot() - Method in class org.catacomb.dataview.gui.DViewPlotController

getSnapshot() - Method in class org.catacomb.druid.gui.base.DruDataDisplay

getSocket() - Method in interface org.catacomb.interlish.structure.Plug

getSockets() - Method in interface org.catacomb.interlish.structure.Assembly

getSource() - Method in class org.catacomb.be.ChangeEvent

getSource(String, String) - Method in class org.catacomb.druid.load.DruidContentLoader

getSource(String) - Method in class org.catacomb.druid.load.XMLStore

getSource() - Method in class org.catacomb.druid.xtext.base.TextFloat

getSourceFile() - Method in interface org.catacomb.be.FileSourcable

getSourceFile() - Method in class org.catacomb.dataview.read.FUImportContext

getSourceFile() - Method in class org.catacomb.druid.manifest.DecFile

getSourceFile() - Method in class org.catacomb.interlish.content.DocumentedComponent

getSourceLocation() - Method in class org.catacomb.druid.build.Context

getSources(String) - Method in class org.catacomb.druid.load.XMLStore

getSpecieHM() - Method in class org.textensor.stochdiff.model.ReactionScheme

getSpecieID() - Method in class org.textensor.stochdiff.model.SpecieRef

getSpecieIDs() - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

getSpecieIndex(String) - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

getSpecieIndexes(String[]) - Method in class org.textensor.stochdiff.numeric.StaticCalc

getSpecieList() - Method in class org.textensor.stochdiff.model.ReactionScheme

getSpeciesIDList() - Method in class org.textensor.stochdiff.model.ReactionScheme

getSpeciesIDs() - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

getSpecifiedTypeName(Specified) - Method in interface org.catacomb.interlish.structure.Specifier

getSpecifier() - Method in interface org.catacomb.interlish.structure.Generic

getSpecifier() - Method in interface org.catacomb.interlish.structure.Specified

getSpeed() - Method in class org.catacomb.dataview.FrameController

getSpeed() - Method in class org.catacomb.dataview.gui.FramePlayerController

getSpeed() - Method in class org.catacomb.graph.gui.MovieDisplay

getSpineDistribution() - Method in class org.textensor.stochdiff.model.Morphology

getSprite(String) - Method in class org.catacomb.datalish.SpriteStore

getSpriteStore() - Method in interface org.catacomb.datalish.SpriteAnimation

getSpriteStore() - Method in class org.catacomb.numeric.data.AnimSlice

getSpriteStore() - Method in class org.catacomb.numeric.data.NumDataStore

getStart() - Method in class org.textensor.stochdiff.model.Segment

getStartTime() - Method in class org.textensor.stochdiff.model.SDRun

getState() - Method in class org.catacomb.druid.swing.DRadioButton

getState() - Method in class org.catacomb.druid.swing.TristateCheckBox

Return the current state, which is determined by the selection status of the model.

getState() - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

The current state is embedded in the selection / armed state of the model.

getStates() - Method in class org.catacomb.druid.swing.DPopLabel

getStateSaveInterval() - Method in class org.textensor.stochdiff.model.SDRun

getStateText() - Method in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

getStateText() - Method in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

getStateText() - Method in class org.textensor.stochdiff.numeric.tmp.Tmp1A

getStatic(String) - Method in class org.catacomb.interlish.reflect.ObjectAccessor

getStatic(String) - Method in class org.catacomb.interlish.reflect.ReflectionWrapper

getStatic(String) - Method in interface org.catacomb.interlish.structure.Structure

getStep() - Method in class org.catacomb.be.TimePoint

getStepCount() - Method in interface org.catacomb.interlish.structure.Stepper

getStimIndex(String) - Method in class org.textensor.stochdiff.numeric.chem.StimulationTable

getStimLabels() - Method in class org.textensor.stochdiff.numeric.chem.StimulationTable

getStimsForInterval(double, double) - Method in class org.textensor.stochdiff.numeric.chem.StimulationTable

getStimulationSet() - Method in class org.textensor.stochdiff.model.SDRun

getStimulationTable() - Method in class org.textensor.stochdiff.numeric.BaseCalc

getStimulus() - Method in class org.catacomb.numeric.difnet.model.BasicStateNode

getStimulus() - Method in interface org.catacomb.numeric.difnet.StateNode

returns true if the node has an active stimulation scheme.

getStochDiffMorphology() - Method in class org.textensor.stochdiff.neuroml.cell

getStochDiffSegment(HashMap<String, String>) - Method in class org.textensor.stochdiff.neuroml.segment

getStore() - Static method in class org.catacomb.graph.gui.DataViewStore

getString() - Method in class org.catacomb.interlish.content.StringValue

getString() - Method in class org.catacomb.interlish.report.StringQuietWriter

getString(String) - Method in interface org.catacomb.interlish.structure.FlatDataStore

getStringArray() - Method in class org.catacomb.druid.swing.DPlainTextEditor

getStringClosure() - Method in class org.catacomb.graph.drawing.Shape

getStringField(Object, String) - Static method in class org.catacomb.util.Reflector

getStringIdentifier() - Method in interface org.catacomb.be.StringIdentifiable

getStringIdentifier() - Method in class org.catacomb.druid.swing.DButton

getStringIdentifier() - Method in class org.catacomb.druid.swing.DCheckbox

getStringIdentifier() - Method in class org.catacomb.druid.swing.DToggleButton

getStringLineStyle() - Method in class org.catacomb.graph.gui.DisplayStyleSet

getStringLineWidth() - Method in class org.catacomb.graph.gui.DisplayStyleSet

getStringSymmetry() - Method in class org.catacomb.graph.drawing.Shape

getStringSymmetry(int) - Static method in class org.catacomb.graph.drawing.ShapeSymmetry

getStringTime() - Static method in class org.catacomb.report.E

getStringTime() - Static method in class org.textensor.report.E

getStringValue() - Method in class org.catacomb.druid.gui.edit.DruColorChoice

getStringValue() - Method in interface org.catacomb.interlish.structure.HistoriablePrimitive

getStringValue() - Method in class org.catacomb.numeric.data.FloatVector

getStringValueEditor(String) - Method in class org.catacomb.druid.build.DruidTargetStore

getStringValueEditor(String) - Method in interface org.catacomb.interlish.structure.TargetStore

getStripLengths() - Method in class org.textensor.stochdiff.numeric.morph.TrianglesSet

getStroke(int, int) - Method in class org.catacomb.graph.gui.DisplayStrokes

getStructureLink() - Method in class org.catacomb.numeric.difnet.model.BasicStateLink

getStructureLink() - Method in interface org.catacomb.numeric.difnet.StateLink

gets the shared properties object holding the non-state information for this link.

getStructureNode() - Method in class org.catacomb.numeric.difnet.model.BasicStateNode

getStructureNode() - Method in interface org.catacomb.numeric.difnet.StateNode

gets the properties object holding the non-state information for this node

getStub() - Method in class org.catacomb.act.MethodSignature

getStubInfo(Object, int) - Method in class org.catacomb.interlish.service.ScriptManager

getStubs() - Method in class org.catacomb.act.ScriptStubs

getStubs(Object, int) - Method in class org.catacomb.interlish.service.ScriptManager

getStubs(Object, int) - Method in interface org.catacomb.interlish.service.ScriptSource

getStyleNames() - Static method in class org.catacomb.graph.gui.DisplayStyleSet

getStyleSet(String) - Method in class org.catacomb.graph.gui.DisplayStylesData

getStyleSets() - Method in class org.catacomb.graph.gui.DisplayStylesData

getStyleSheet() - Method in class org.catacomb.druid.swing.DEditorPane

getSubdivision(MeshPoint, MeshPoint, double) - Static method in class org.catacomb.numeric.mesh.Discretizer

getSubmembrane() - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

getSubmembranes() - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

getSubMenu(String) - Method in class org.catacomb.druid.build.DruidTargetStore

getSubMenu(String) - Method in interface org.catacomb.interlish.structure.TargetStore

getSubSourceMethodStubs() - Method in class org.catacomb.act.Classdef

getSubstates() - Method in interface org.catacomb.interlish.structure.VisibleState

getSubtypes() - Method in class org.catacomb.druid.xtext.data.XType

getSummary() - Method in class org.catacomb.interlish.report.Message

getSummary() - Method in interface org.catacomb.interlish.structure.SelfSummarizer

getSupercessor() - Method in interface org.catacomb.interlish.structure.Supercedable

getSupplyClerk(String) - Method in class org.catacomb.druid.market.SupplyAgent

getSurfaceBoundary() - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

getSurfaceDensityHM() - Method in class org.textensor.stochdiff.model.SurfaceDensitySet

getSurfaceLayers() - Method in class org.textensor.stochdiff.model.Discretization

getSValue() - Method in class org.catacomb.interlish.content.NVPair

getSymmetry() - Method in class org.catacomb.graph.drawing.Shape

getSymmetryNames() - Static method in class org.catacomb.graph.drawing.ShapeSymmetry

getSys() - Static method in class org.catacomb.druid.load.DruidAppBase

getTable() - Method in class org.catacomb.graph.drawing.Shape

getTable() - Method in interface org.catacomb.interlish.structure.Row

getTable() - Method in interface org.catacomb.interlish.structure.TablePeer

getTable() - Static method in class org.textensor.stochdiff.numeric.stochastic.BinomialTable

getTablizerOf(String) - Method in class org.catacomb.druid.load.DruidContentLoader

getTablizerOf(String) - Method in interface org.catacomb.interlish.service.ContentLoader

getTag() - Method in class org.catacomb.druid.swing.dnd.Region

getTag() - Method in class org.catacomb.druid.swing.DTextField

getTag() - Method in class org.catacomb.interlish.content.DocumentedComponent

getTag() - Method in interface org.catacomb.interlish.structure.IdentifierLabel

getTag() - Method in interface org.catacomb.interlish.structure.Tagged

getTag() - Method in class org.catacomb.numeric.difnet.model.PointRecorder

getTag() - Method in class org.catacomb.numeric.difnet.model.PointStim

getTagger() - Static method in class org.catacomb.xdoc.TextTagger

getTarget() - Method in class org.catacomb.druid.gui.edit.Effect

getTarget() - Method in class org.catacomb.druid.xtext.edit.GuiseController

getTarget() - Method in class org.catacomb.interlish.reflect.ObjectAccessor

getTarget() - Method in class org.catacomb.interlish.reflect.ReflectionWrapper

getTarget() - Method in class org.catacomb.interlish.structure.Relationship

getTarget() - Method in interface org.catacomb.interlish.structure.Targeted

getTargetID() - Method in class org.catacomb.druid.gui.edit.Effect

getTargetID() - Method in interface org.catacomb.interlish.structure.IdentifierLabel

getTargetIDs() - Method in class org.textensor.stochdiff.numeric.chem.StimulationTable

getTargetIndex() - Method in class org.catacomb.numeric.difnet.model.PointStim

getTargetRegion() - Method in class org.textensor.stochdiff.numeric.morph.SpinePopulation

getTargetStore() - Method in class org.catacomb.druid.build.GUIStore

getTempFolder() - Static method in class org.catacomb.util.FileUtil

GETTER - Static variable in interface org.catacomb.act.BlockSignature

getter - Variable in class org.catacomb.act.FieldSignature

getText() - Method in class org.catacomb.druid.blocks.HTMLContent

getText() - Method in class org.catacomb.druid.gui.edit.DruDropBox

getText() - Method in class org.catacomb.druid.gui.edit.DruProgressReport

getText() - Method in class org.catacomb.druid.swing.DDropCanvas

getText() - Method in class org.catacomb.druid.swing.dnd.Region

getText() - Method in class org.catacomb.druid.swing.DPlainTextEditor

getText() - Method in class org.catacomb.druid.swing.DPopLabel

getText() - Method in class org.catacomb.druid.swing.DTextArea

getText() - Method in class org.catacomb.druid.swing.DTextField

getText() - Method in class org.catacomb.druid.xtext.base.TextBlock

getText() - Method in class org.catacomb.druid.xtext.base.TextFloat

getText() - Method in class org.catacomb.druid.xtext.data.XItem

getText() - Method in class org.catacomb.interlish.report.Message

getText() - Method in class org.catacomb.interlish.report.PrintProgressReport

getText() - Method in interface org.catacomb.interlish.service.ScriptReport

getText() - Method in interface org.catacomb.interlish.structure.Element

getText() - Method in interface org.catacomb.interlish.structure.ProgressReport

getText() - Method in interface org.catacomb.interlish.structure.TextGettable

getText() - Method in class org.catacomb.serial.om.OmElement

getText3D() - Method in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

getTextArea(String) - Method in class org.catacomb.druid.build.DruidTargetStore

getTextArea(String) - Method in interface org.catacomb.interlish.structure.TargetStore

getTextDump() - Method in class org.catacomb.druid.build.GUIStore

getTextField(String) - Method in class org.catacomb.druid.build.DruidTargetStore

getTextField(String) - Method in interface org.catacomb.interlish.structure.TargetStore

getThingType() - Method in class org.catacomb.druid.xtext.data.XTypeStore

getTicks(double[], double, double, int) - Static method in class org.catacomb.graph.gui.GridPainter

getTickValues(int, double, double) - Static method in class org.catacomb.graph.gui.GridPainter

getTime() - Method in class org.catacomb.be.Placement

getTime() - Method in class org.catacomb.be.TimePoint

getTime() - Method in class org.catacomb.datalish.SceneConfig

getTime() - Method in class org.catacomb.numeric.data.NumDataStore

getTime() - Method in class org.catacomb.numeric.difnet.model.BasicNetState

getTime() - Method in interface org.catacomb.numeric.difnet.NetState

getTime() - Static method in class org.catacomb.report.E

getTime() - Static method in class org.textensor.report.E

getTimes() - Method in interface org.catacomb.interlish.structure.MultiTimed

getTimes() - Method in class org.catacomb.numeric.data.EventSequence

getTimestep() - Method in class org.catacomb.be.TimePoint

getTimestep() - Method in interface org.catacomb.interlish.structure.FSRunnable

getTimestep() - Method in interface org.catacomb.interlish.structure.RunProcess

getTip() - Method in class org.catacomb.druid.gui.base.DruPanel

getTitle() - Method in class org.catacomb.druid.blocks.TableTree

getTitle() - Method in class org.catacomb.druid.gui.base.DruPanel

getTitle() - Method in class org.catacomb.druid.xtext.base.XTDoc

getTitle() - Method in interface org.catacomb.interlish.structure.Titled

getTitle() - Method in class org.catacomb.numeric.data.StackSlice

getTitleDate() - Method in class org.catacomb.interlish.version.BuildInfo

getToggle(String) - Method in class org.catacomb.druid.build.DruidTargetStore

getToggle(String) - Method in interface org.catacomb.interlish.structure.TargetStore

getToolbarBackground() - Static method in class org.catacomb.druid.swing.LAF

getToolTipText(MouseEvent) - Method in class org.catacomb.druid.swing.DList

getTopArea() - Method in class org.textensor.stochdiff.numeric.morph.CuboidVolumeElement

getTopArea() - Method in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

getTotalPreserved() - Method in class org.textensor.stochdiff.model.FitConstraints

getTotalPreserved() - Method in class org.textensor.stochdiff.model.InitialConditions

getTotalRange() - Method in class org.catacomb.druid.swing.DFloatSlider

getTouchTime() - Method in class org.catacomb.graph.drawing.IconImage

getTouchTime() - Method in class org.catacomb.graph.drawing.VectorIcon

getTouchTime() - Method in class org.catacomb.interlish.content.DocumentedComponent

getTouchTime() - Method in class org.catacomb.interlish.content.PrimitiveValue

getTouchTime() - Method in interface org.catacomb.interlish.structure.Touchable

getTouchTime() - Method in interface org.catacomb.interlish.structure.TouchTimed

getTouchTime() - Method in class org.catacomb.numeric.data.DDSlice

getToVector(Position) - Static method in class org.textensor.stochdiff.geom.Geom

getTransferData(DataFlavor) - Method in class org.catacomb.druid.swing.dnd.DdndTransferable

getTransferDataFlavors() - Method in class org.catacomb.druid.swing.dnd.DdndTransferable

getTranslated(Position) - Method in class org.textensor.stochdiff.geom.GTranslation

getTranslated(Position) - Method in interface org.textensor.stochdiff.geom.Translation

getTree() - Method in class org.catacomb.druid.swing.DTreeModel

getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.catacomb.druid.swing.CheckTreeRenderer

getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.catacomb.druid.swing.TCRenderer

getTreePoints() - Method in class org.textensor.stochdiff.model.Morphology

getType() - Method in class org.catacomb.be.StructElement

getType() - Method in class org.catacomb.druid.blocks.TableTree

getType() - Method in class org.catacomb.druid.xtext.base.TextBlock

getType() - Method in class org.catacomb.druid.xtext.data.XItem

getType(String) - Method in class org.catacomb.druid.xtext.data.XTypeStore

getType() - Method in class org.catacomb.graph.drawing.ShapePoint

getType() - Method in class org.catacomb.interlish.structure.Relationship

getType() - Method in class org.catacomb.numeric.difnet.model.PointCurrentStim

getType() - Method in class org.catacomb.numeric.difnet.model.PointVoltageStim

getType() - Method in interface org.catacomb.numeric.difnet.Stimulus

getTypeCode() - Method in interface org.catacomb.act.BlockSignature

getTypeCode() - Method in class org.catacomb.act.FunctionSignature

getTypeCode() - Method in class org.catacomb.act.MethodSignature

getTypeID() - Method in class org.catacomb.druid.xtext.data.XRelation

getTypeID() - Method in class org.catacomb.interlish.content.DocumentedComponent

getTypeInfo(int) - Static method in class org.catacomb.act.FunctionSignature

getTypeInfo(int) - Static method in class org.catacomb.act.MethodSignature

getTypeInstantiator() - Method in class org.catacomb.interlish.service.ScriptManager

getTypeName() - Method in class org.catacomb.interlish.reflect.ObjectAccessor

getTypeName() - Method in class org.catacomb.interlish.reflect.ReflectionWrapper

getTypeName() - Method in interface org.catacomb.interlish.structure.Structure

getTypes() - Method in class org.catacomb.druid.xtext.data.PageDataStore

getTypes() - Method in class org.catacomb.druid.xtext.data.XTypeStore

getTypeType() - Method in class org.catacomb.druid.xtext.data.XTypeStore

getTypicalSize() - Method in interface org.catacomb.interlish.structure.Assembly

getUName() - Method in class org.catacomb.act.FieldSignature

getUnit() - Method in class org.catacomb.numeric.data.DDSubSlice

getUnit() - Method in class org.catacomb.numeric.data.DVector

getUnit() - Method in class org.catacomb.numeric.data.EventSequence

getUnit() - Method in interface org.catacomb.numeric.data.NumDataItem

getUnit() - Method in class org.catacomb.numeric.data.StackSlice

getUnitNormal(Position[]) - Static method in class org.textensor.stochdiff.geom.Geom

getUpBlock() - Method in class org.catacomb.druid.xtext.base.ContainerBlock

getUseIntrinsics() - Method in class org.catacomb.numeric.difnet.calc.OrderedNetMap

getValue() - Method in class org.catacomb.druid.gui.edit.DruSlider

getValue() - Method in class org.catacomb.druid.gui.edit.DruToggleButton

getValue(String) - Method in class org.catacomb.druid.load.Settings

getValue() - Method in class org.catacomb.druid.swing.DFloat

getValue() - Method in class org.catacomb.druid.swing.DFloatSlider

getValue() - Method in class org.catacomb.druid.swing.DInt

getValue() - Method in class org.catacomb.druid.swing.DSlider

getValue() - Method in class org.catacomb.interlish.content.NVPair

getValue() - Method in class org.catacomb.interlish.resource.Role

getValue() - Method in interface org.catacomb.interlish.structure.ChangeTime

getValue() - Method in interface org.catacomb.interlish.structure.NameValuePairOnly

getValue(int) - Method in class org.catacomb.numeric.data.DoubleArray

getValue() - Method in class org.catacomb.numeric.data.FloatRow

getValue() - Method in class org.catacomb.numeric.data.FloatScalar

getValue() - Method in class org.catacomb.numeric.data.FloatVector

getValue(DiffusibleQuantity) - Method in class org.catacomb.numeric.difnet.model.BasicStateNode

getValue(double) - Method in class org.catacomb.numeric.difnet.model.PointCurrentStim

getValue(double) - Method in class org.catacomb.numeric.difnet.model.PointVoltageStim

getValue(DiffusibleQuantity) - Method in interface org.catacomb.numeric.difnet.StateNode

getValue(double) - Method in interface org.catacomb.numeric.difnet.Stimulus

getValue() - Method in class org.catacomb.serial.om.OmAttribute

getValue() - Method in class org.catacomb.serial.quickxml.Element

getValue(String) - Method in class org.catacomb.serial.quickxml.Element

getValue() - Method in class org.catacomb.serial.xml.NamedString

getValue() - Method in class org.catacomb.serial.xml.NVPair

getValue() - Method in interface org.textensor.stochdiff.inter.FloatValued

getValue() - Method in class org.textensor.stochdiff.model.NanoMolarity

getValue() - Method in class org.textensor.stochdiff.model.NumberDensity

getValue() - Method in class org.textensor.stochdiff.model.PicoSD

getValue() - Method in class org.textensor.xml.Attribute

getValueArray() - Method in class org.catacomb.interlish.content.QuantityList

getValueAt(int) - Method in class org.catacomb.numeric.difnet.model.BasicNetState

getValueAt(int) - Method in interface org.catacomb.numeric.difnet.NetState

getValueFor(String) - Method in class org.catacomb.druid.load.DruidAppBase

getValueFor(String) - Static method in class org.catacomb.interlish.service.AppPersist

getValueFor(String) - Method in interface org.catacomb.interlish.service.AppPersistProvider

getValueNames() - Method in class org.catacomb.dataview.formats.MeshDataReader

getValues() - Method in class org.catacomb.numeric.data.NumDataSet

getValues(NetState) - Method in class org.catacomb.numeric.difnet.model.BasicNetRecorder

getValues(String) - Method in class org.catacomb.serial.quickxml.Element

getValues() - Method in class org.textensor.stochdiff.model.SurfaceLayers

getVector(String) - Method in class org.catacomb.numeric.data.DataExtractor

getVector() - Method in class org.catacomb.numeric.data.DataSlice

getVectorIcon() - Method in class org.catacomb.graph.arbor.SegmentGraph

getVectorIcon() - Method in interface org.catacomb.graph.drawing.VectorIconAdopter

getVectorIcon() - Method in interface org.catacomb.graph.drawing.VectorIconed

getVectors() - Method in class org.catacomb.numeric.data.DDSlice

getVectors() - Method in interface org.catacomb.numeric.data.NumVectorSet

getVectors() - Method in class org.catacomb.numeric.data.VectorSet

getVerboseElementText(String, String) - Static method in class org.catacomb.icon.splash.Splasher

getVerboseElementText(String, String) - Static method in class org.catacomb.serial.quickxml.ElementExtractor

getVerts() - Method in class org.textensor.vis.VolElt

getViewConfig(String) - Method in interface org.catacomb.dataview.formats.DataHandler

getViewConfig(String) - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

getViewConfig(String) - Method in class org.catacomb.dataview.formats.MeshSummary

getViewConfig(String) - Method in class org.catacomb.dataview.formats.PolyLineHandler

getViewConfig(String) - Method in class org.catacomb.dataview.formats.SWCDisplay

getViewConfig(String) - Method in class org.catacomb.dataview.formats.TableDataHandler

getViewOptions() - Method in interface org.catacomb.dataview.formats.DataHandler

getViewOptions() - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

getViewOptions() - Method in class org.catacomb.dataview.formats.MeshSummary

getViewOptions() - Method in class org.catacomb.dataview.formats.PolyLineHandler

getViewOptions() - Method in class org.catacomb.dataview.formats.SWCDisplay

getViewOptions() - Method in class org.catacomb.dataview.formats.TableDataHandler

getViews() - Method in class org.catacomb.dataview.model.LineGraph

getViewSet(String) - Method in class org.catacomb.graph.gui.DataViewStore

getVolume() - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

getVolumeGrid() - Method in class org.textensor.stochdiff.numeric.BaseCalc

getVolumes() - Method in class org.textensor.stochdiff.numeric.StaticCalc

getW() - Method in class org.catacomb.druid.swing.dnd.Region

getWidth() - Method in class org.catacomb.dataview.model.LineGraph

getWidth() - Method in class org.catacomb.druid.swing.dnd.RegionBoard

getWidth() - Method in class org.catacomb.druid.xtext.base.TextFloat

getWidth() - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

getWidth() - Method in class org.catacomb.graph.gui.Size

getWidth() - Method in class org.catacomb.graph.gui.WorldTransform

getWidths() - Method in class org.textensor.stochdiff.disc.DiscretizedSpine

getWidths() - Method in class org.textensor.stochdiff.numeric.morph.SpineProfile

getWord() - Static method in class org.catacomb.druid.xtext.StandardGuises

getWork() - Method in class org.catacomb.numeric.difnet.CellPoint

getWork() - Method in class org.catacomb.numeric.difnet.model.BasicStructureNode

getWork() - Method in interface org.catacomb.numeric.difnet.StructureNode

retrieves the previously set work integer.

getWork() - Method in class org.catacomb.numeric.mesh.DifMeshPoint

getWork() - Method in interface org.catacomb.numeric.mesh.MeshPoint

getWork() - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

getWorkbench() - Method in class org.catacomb.druid.gui.base.DruAssemblyPanel

getWorldCanvasWidth() - Method in class org.catacomb.graph.gui.Painter

getWorldCanvasWidth() - Method in class org.catacomb.graph.gui.WorldTransform

getWorldPosition(int, int) - Method in class org.catacomb.graph.gui.WorldTransform

getWorldTransform() - Method in class org.catacomb.graph.gui.WorldCanvas

getX() - Method in class org.catacomb.be.Position

getX() - Method in interface org.catacomb.be.XYLocation

getX() - Method in class org.catacomb.druid.swing.dnd.Region

getX() - Method in class org.catacomb.druid.xtext.base.TextFloat

getX() - Method in class org.catacomb.graph.arbor.ManipXYLocation

getX() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

getX() - Method in class org.catacomb.graph.gui.Mouse

getX() - Method in class org.catacomb.interlish.content.Heading

getX() - Method in class org.catacomb.interlish.content.IntPosition

getX() - Method in class org.catacomb.numeric.difnet.model.BasicStructureNode

getX() - Method in class org.catacomb.numeric.mesh.DifMeshPoint

getX() - Method in interface org.catacomb.numeric.mesh.MeshPoint

getX() - Method in class org.textensor.stochdiff.geom.GPosition

getX() - Method in interface org.textensor.stochdiff.geom.Position

getX() - Method in class org.textensor.stochdiff.neuroml.MorphMLPoint

getX() - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

getX() - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

getX(int) - Method in class org.textensor.stochdiff.numeric.morph.VolumeSlice

getX() - Method in class org.textensor.vis.IcingPoint

getXAxis() - Method in class org.catacomb.dataview.model.LineGraph

getXAxisLabel() - Method in interface org.catacomb.dataview.formats.DataHandler

getXAxisLabel() - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

getXAxisLabel() - Method in class org.catacomb.dataview.formats.MeshSummary

getXAxisLabel() - Method in class org.catacomb.dataview.formats.PolyLineHandler

getXAxisLabel() - Method in class org.catacomb.dataview.formats.SWCDisplay

getXAxisLabel() - Method in class org.catacomb.dataview.formats.TableDataHandler

getXCpt() - Method in class org.catacomb.be.Direction

getXDown() - Method in class org.catacomb.graph.gui.Mouse

getXmax() - Method in class org.catacomb.datalish.Box

getXmin() - Method in class org.catacomb.datalish.Box

getXMLResource(String) - Static method in class org.catacomb.icon.splash.Splasher

getXMLResource(String) - Static method in class org.catacomb.interlish.util.JUtil

getXProj(double[]) - Method in class org.catacomb.graph.gui.Painter

getXProj(float[]) - Method in class org.catacomb.graph.gui.Painter

getXProjPixel(double, double, double) - Method in class org.catacomb.graph.gui.Painter

getXPts() - Method in class org.catacomb.graph.drawing.SegmentLine

getXPts() - Method in class org.catacomb.graph.drawing.Shape

getXPts() - Method in class org.catacomb.graph.gui.PickableRegion

getXPts() - Method in class org.catacomb.interlish.content.Polypoint

getXPts() - Method in class org.catacomb.interlish.content.RShape

getXPts() - Method in interface org.catacomb.interlish.content.VectorScene

getXPts() - Method in class org.catacomb.numeric.data.XYVectorScene

getXPts() - Method in class org.textensor.stochdiff.numeric.morph.SpineProfile

getXRange() - Method in class org.catacomb.druid.gui.base.DruDataDisplay

getXRange() - Method in class org.catacomb.druid.gui.base.DruMovieDisplay

getXRange() - Method in class org.catacomb.graph.gui.DataDisplay

getXRange() - Method in class org.catacomb.graph.gui.MovieDisplay

getXRange() - Method in class org.catacomb.graph.gui.WorldCanvas

getXRange() - Method in class org.catacomb.graph.gui.WorldTransform

getXReference() - Method in class org.catacomb.graph.gui.PickableRegion

getXRel() - Method in class org.catacomb.graph.drawing.IconWrapper

getXSubdivision(double) - Method in class org.catacomb.datalish.Box

getXSubdivision(double, int) - Method in class org.catacomb.datalish.Box

getXY() - Method in class org.catacomb.druid.build.Druid

getXYLocation() - Method in interface org.catacomb.be.XYLocated

getXYLocation() - Method in class org.catacomb.druid.swing.DPanel

getXYLocation() - Method in class org.catacomb.graph.arbor.SGAttachmentPoint

getXYLocation() - Method in interface org.catacomb.interlish.structure.Plug

getXYLocation() - Method in interface org.catacomb.interlish.structure.Socket

getXYLocationOnScreen() - Method in class org.catacomb.druid.gui.base.DruPanel

getXYLocationOnScreen() - Method in class org.catacomb.druid.swing.DPanel

getXYLocationOnScreen() - Method in interface org.catacomb.interlish.structure.TableEditor

getXYXY() - Method in class org.catacomb.dataview.model.View

getXYXY() - Method in class org.catacomb.graph.gui.BoxSelectionHandler

getXYXYLimits() - Method in class org.catacomb.graph.gui.DataView

getXYXYLimits() - Method in class org.catacomb.graph.gui.Painter

getXYXYLimits() - Method in class org.catacomb.graph.gui.WorldTransform

getY() - Method in class org.catacomb.be.Position

getY() - Method in interface org.catacomb.be.XYLocation

getY() - Method in class org.catacomb.druid.swing.dnd.Region

getY() - Method in class org.catacomb.druid.xtext.base.TextFloat

getY() - Method in class org.catacomb.graph.arbor.ManipXYLocation

getY() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

getY() - Method in class org.catacomb.graph.gui.Mouse

getY() - Method in class org.catacomb.interlish.content.Heading

getY() - Method in class org.catacomb.interlish.content.IntPosition

getY() - Method in class org.catacomb.numeric.difnet.model.BasicStructureNode

getY() - Method in class org.catacomb.numeric.mesh.DifMeshPoint

getY() - Method in interface org.catacomb.numeric.mesh.MeshPoint

getY() - Method in class org.textensor.stochdiff.geom.GPosition

getY() - Method in interface org.textensor.stochdiff.geom.Position

getY() - Method in class org.textensor.stochdiff.neuroml.MorphMLPoint

getY() - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

getY() - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

getY(int) - Method in class org.textensor.stochdiff.numeric.morph.VolumeSlice

getY() - Method in class org.textensor.vis.IcingPoint

getYAxis() - Method in class org.catacomb.dataview.model.LineGraph

getYAxisLabel() - Method in interface org.catacomb.dataview.formats.DataHandler

getYAxisLabel() - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

getYAxisLabel() - Method in class org.catacomb.dataview.formats.MeshSummary

getYAxisLabel() - Method in class org.catacomb.dataview.formats.PolyLineHandler

getYAxisLabel() - Method in class org.catacomb.dataview.formats.SWCDisplay

getYAxisLabel() - Method in class org.catacomb.dataview.formats.TableDataHandler

getYCpt() - Method in class org.catacomb.be.Direction

getYDown() - Method in class org.catacomb.graph.gui.Mouse

getYmax() - Method in class org.catacomb.datalish.Box

getYmin() - Method in class org.catacomb.datalish.Box

getYProj(double[]) - Method in class org.catacomb.graph.gui.Painter

getYProj(float[]) - Method in class org.catacomb.graph.gui.Painter

getYProjPixel(double, double, double) - Method in class org.catacomb.graph.gui.Painter

getYPts() - Method in class org.catacomb.graph.drawing.SegmentLine

getYPts() - Method in class org.catacomb.graph.drawing.Shape

getYPts() - Method in class org.catacomb.graph.gui.PickableRegion

getYPts() - Method in class org.catacomb.interlish.content.Polypoint

getYPts() - Method in class org.catacomb.interlish.content.RShape

getYPts() - Method in interface org.catacomb.interlish.content.VectorScene

getYPts() - Method in class org.catacomb.numeric.data.XYVectorScene

getYRange() - Method in class org.catacomb.druid.gui.base.DruDataDisplay

getYRange() - Method in class org.catacomb.druid.gui.base.DruMovieDisplay

getYRange() - Method in class org.catacomb.graph.gui.DataDisplay

getYRange() - Method in class org.catacomb.graph.gui.MovieDisplay

getYRange() - Method in class org.catacomb.graph.gui.WorldCanvas

getYRange() - Method in class org.catacomb.graph.gui.WorldTransform

getYReference() - Method in class org.catacomb.graph.gui.PickableRegion

getYRel() - Method in class org.catacomb.graph.drawing.IconWrapper

getYSubdivision(double) - Method in class org.catacomb.datalish.Box

getYSubdivision(double, int) - Method in class org.catacomb.datalish.Box

getZ() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

getZ() - Method in class org.catacomb.numeric.difnet.model.BasicStructureNode

getZ() - Method in class org.catacomb.numeric.mesh.DifMeshPoint

getZ() - Method in interface org.catacomb.numeric.mesh.MeshPoint

getZ() - Method in class org.textensor.stochdiff.geom.GPosition

getZ() - Method in interface org.textensor.stochdiff.geom.Position

getZ() - Method in class org.textensor.stochdiff.neuroml.MorphMLPoint

getZ() - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

getZ() - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

getZ() - Method in class org.textensor.vis.IcingPoint

getZProj(double[]) - Method in class org.catacomb.graph.gui.Painter

getZProj(float[]) - Method in class org.catacomb.graph.gui.Painter

getZProj(double, double, double) - Method in class org.catacomb.graph.gui.Painter

global() - Method in class org.catacomb.druid.market.HookupBoard

global() - Method in interface org.catacomb.interlish.structure.Marketplace

globalBoard - Static variable in class org.catacomb.druid.market.HookupBoard

globalCounter - Static variable in class org.catacomb.interlish.content.BasicTouchTime

gotString(String, String, String) - Method in interface org.catacomb.druid.event.StringUser

GPosition - Class in org.textensor.stochdiff.geom

GPosition(double, double, double) - Constructor for class org.textensor.stochdiff.geom.GPosition

GPosition(Position) - Constructor for class org.textensor.stochdiff.geom.GPosition

GPosition() - Constructor for class org.textensor.stochdiff.geom.GPosition

GradientPanel - Class in org.catacomb.druid.swing

GradientPanel(int, int) - Constructor for class org.catacomb.druid.swing.GradientPanel

graph - Variable in class org.catacomb.graph.arbor.SegmentGraphPainter

graph - Variable in class org.catacomb.graph.arbor.SegmentGraphVE

graphBg - Variable in class org.catacomb.graph.gui.GraphColors

GraphColors - Class in org.catacomb.graph.gui

GraphColors() - Constructor for class org.catacomb.graph.gui.GraphColors

GraphContextMenu - Class in org.catacomb.graph.gui

GraphContextMenu(WorldCanvas) - Constructor for class org.catacomb.graph.gui.GraphContextMenu

GraphContextMenu.GCMHandler - Class in org.catacomb.graph.gui

GraphContextMenu.GCMHandler(GraphContextMenu, String) - Constructor for class org.catacomb.graph.gui.GraphContextMenu.GCMHandler

graphics - Variable in class org.catacomb.dataview.AxisPainter

graphics - Variable in class org.catacomb.dataview.GraphMaker

GraphicsView - Interface in org.catacomb.interlish.structure

GraphMaker - Class in org.catacomb.dataview

GraphMaker(int, int, Color) - Constructor for class org.catacomb.dataview.GraphMaker

GRAY - Static variable in class org.catacomb.numeric.phys.Phys

GREEN - Static variable in class org.catacomb.numeric.phys.Phys

gridAL - Variable in class org.textensor.stochdiff.disc.DiscBoxer

gridAL - Variable in class org.textensor.stochdiff.disc.DiscSplitter

gridAL - Variable in class org.textensor.stochdiff.disc.LineBoxer

gridColor - Variable in class org.catacomb.druid.blocks.DrawingCanvas

gridColor - Variable in class org.catacomb.graph.gui.GridPainter

GridDataSource - Interface in org.catacomb.interlish.structure

gridify(int, int) - Method in class org.catacomb.druid.gui.base.DruFormPanel

gridify(int, int) - Method in class org.catacomb.druid.swing.DFormPanel

GridPainter - Class in org.catacomb.graph.gui

GridPainter() - Constructor for class org.catacomb.graph.gui.GridPainter

gridPainter - Variable in class org.catacomb.graph.gui.PickWorldCanvas

GridPanel - Class in org.catacomb.druid.blocks

GridPanel() - Constructor for class org.catacomb.druid.blocks.GridPanel

GRotation - Class in org.textensor.stochdiff.geom

GRotation() - Constructor for class org.textensor.stochdiff.geom.GRotation

GRotation(int, double) - Constructor for class org.textensor.stochdiff.geom.GRotation

group - Variable in class org.catacomb.druid.blocks.ToggleButton

groupAction - Variable in class org.catacomb.druid.blocks.ToggleButton

GroupContingent - Interface in org.catacomb.druid.build

groupID - Variable in class org.textensor.stochdiff.numeric.morph.VolumeElement

growMenu(Object, String, String[], int) - Method in class org.catacomb.druid.swing.DPopLabel

grv() - Static method in class org.catacomb.numeric.math.Random

grv() - Static method in class org.textensor.stochdiff.numeric.math.NRRandom

GTranslation - Class in org.textensor.stochdiff.geom

GTranslation(Position) - Constructor for class org.textensor.stochdiff.geom.GTranslation

GTranslation(Vector) - Constructor for class org.textensor.stochdiff.geom.GTranslation

GUIPath - Class in org.catacomb.druid.build

GUIPath() - Constructor for class org.catacomb.druid.build.GUIPath

GUIPath(String) - Constructor for class org.catacomb.druid.build.GUIPath

GUIPath(String, String) - Constructor for class org.catacomb.druid.build.GUIPath

Guise - Class in org.catacomb.druid.xtext.base

Guise() - Constructor for class org.catacomb.druid.xtext.base.Guise

guise - Variable in class org.catacomb.druid.xtext.base.Slot

guise - Variable in class org.catacomb.druid.xtext.data.XType

guise - Variable in class org.catacomb.druid.xtext.edit.GuiseController

GuiseController - Class in org.catacomb.druid.xtext.edit

GuiseController() - Constructor for class org.catacomb.druid.xtext.edit.GuiseController

GUISourced - Interface in org.catacomb.interlish.structure

guiStore - Variable in class org.catacomb.druid.build.Context

guiStore - Variable in class org.catacomb.druid.build.Druid

GUIStore - Class in org.catacomb.druid.build

GUIStore() - Constructor for class org.catacomb.druid.build.GUIStore

GVector - Class in org.textensor.stochdiff.geom

GVector(double, double, double) - Constructor for class org.textensor.stochdiff.geom.GVector

GVector(Position) - Constructor for class org.textensor.stochdiff.geom.GVector

GVector(double[]) - Constructor for class org.textensor.stochdiff.geom.GVector

GVector(Vector) - Constructor for class org.textensor.stochdiff.geom.GVector

GVector() - Constructor for class org.textensor.stochdiff.geom.GVector

H

h - Variable in class org.catacomb.druid.swing.DScrollPane

h - Variable in class org.catacomb.graph.gui.Size

h2Font - Variable in class org.catacomb.druid.xtext.canvas.FontStore

handler - Variable in class org.catacomb.dataview.formats.TableDataReader

handler - Variable in class org.catacomb.graph.gui.GraphContextMenu

handlers - Variable in class org.catacomb.graph.gui.Mouse

handlers - Variable in class org.catacomb.graph.gui.WorldCanvas

has(String) - Method in class org.catacomb.druid.build.DruidTargetStore

has(String) - Method in interface org.catacomb.interlish.structure.TargetStore

hasAction() - Method in class org.catacomb.druid.build.ContingencyGroup

hasAction() - Method in class org.catacomb.druid.gui.edit.DruGCPanel

hasActive() - Method in class org.catacomb.druid.swing.dnd.RegionStore

hasActiveSelected() - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

hasActiveSelected() - Method in class org.catacomb.druid.gui.edit.DruToggleListPanel

hasActiveSelected() - Method in class org.catacomb.druid.swing.DCheckboxList

hasAttribute(String) - Method in interface org.catacomb.interlish.structure.Attributed

hasAttribute(String) - Method in class org.catacomb.serial.om.OmElement

hasAttribute(String) - Method in class org.catacomb.serial.xml.XMLToken

hasAttribute(String) - Method in class org.textensor.xml.XMLToken

hasAttributes() - Method in interface org.catacomb.interlish.structure.Attributed

hasAttributes() - Method in class org.catacomb.serial.om.OmElement

hasBody() - Method in class org.catacomb.serial.om.OmElement

hasCachedObject() - Method in class org.catacomb.druid.manifest.DecFile

hasCachedPlayer() - Method in class org.catacomb.interlish.resource.Role

hasCachedText() - Method in class org.catacomb.druid.manifest.DecFile

hasCaret() - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

hasChild(String) - Method in interface org.catacomb.interlish.structure.Parent

hasChild(String) - Method in class org.catacomb.numeric.data.BlockStack

hasChild(String) - Method in class org.catacomb.numeric.data.NumDataStore

hasChildren() - Method in class org.catacomb.druid.util.tree.ArrayListNode

hasComponent(String) - Method in class org.catacomb.druid.gui.base.PanelPack

hasConcentrationsFor(String) - Method in class org.textensor.stochdiff.model.InitialConditions

hasContent(String) - Static method in class org.catacomb.interlish.interact.Clipboard

hasContentLoader() - Static method in class org.catacomb.interlish.service.ResourceAccess

hasCuboids - Variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

hasCurveds - Variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

hasData() - Method in class org.catacomb.datalish.Box

hasData - Variable in class org.catacomb.dataview.build.DisplayablePoint

hasData() - Method in interface org.catacomb.dataview.formats.DataHandler

hasData() - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

hasData() - Method in class org.catacomb.dataview.formats.MeshSummary

hasData() - Method in class org.catacomb.dataview.formats.PolyLineHandler

hasData() - Method in class org.catacomb.dataview.formats.SWCDisplay

hasData() - Method in class org.catacomb.dataview.formats.TableDataHandler

hasdt() - Method in class org.textensor.stochdiff.model.OutputSet

hasEditorOf(String) - Method in class org.catacomb.druid.load.DruidContentLoader

hasEditorOf(String) - Method in interface org.catacomb.interlish.service.ContentLoader

hasElement(String, String) - Method in class org.catacomb.druid.load.Settings

hasElement(String) - Method in class org.catacomb.druid.load.Settings

hasElement(String, String) - Method in class org.catacomb.serial.quickxml.Element

hasElement(String) - Method in class org.catacomb.serial.quickxml.Element

hasElement(int, int) - Method in class org.textensor.stochdiff.numeric.morph.VolumeSlice

hasElementCalled(String) - Method in class org.catacomb.druid.swing.DButtonGroup

hasElements() - Method in interface org.catacomb.interlish.structure.Elemented

hasElements() - Method in class org.catacomb.serial.om.OmElement

hasExposerOf(String) - Method in class org.catacomb.druid.load.DruidContentLoader

hasExposerOf(String) - Method in interface org.catacomb.interlish.service.ContentLoader

hasFactoryFor(String) - Method in class org.catacomb.druid.load.DruidContentLoader

hasFactoryFor(String) - Method in interface org.catacomb.interlish.service.ContentLoader

hasFields() - Method in class org.catacomb.druid.xtext.data.XType

hasFixedValue(DiffusibleQuantity) - Method in class org.catacomb.numeric.difnet.model.BasicStructureNode

hasFixedValue(DiffusibleQuantity) - Method in interface org.catacomb.numeric.difnet.StructureNode

returns true only for those nodes whose value is externally fixed, such as the potential or an earthed bath or a perfect voltage clamp.

hasFname() - Method in class org.textensor.stochdiff.model.OutputSet

hasFocus() - Method in class org.catacomb.druid.swing.dnd.RegionBoard

hasFullID(String) - Method in class org.catacomb.interlish.content.KeyedList

hashCode() - Method in class org.catacomb.interlish.content.ConnectionFlavor

hashCode() - Method in class org.catacomb.util.WSString

hashMap - Variable in class org.catacomb.druid.build.DruidTargetStore

hasInfo() - Method in class org.catacomb.interlish.content.DocumentedComponent

hasInstances() - Method in class org.catacomb.serial.state.TypeClass

hasIntPosition() - Method in class org.catacomb.graph.drawing.Shape

hasItem(String) - Method in class org.catacomb.interlish.content.KeyedList

hasItems(String) - Method in class org.catacomb.interlish.content.KeyedMultiList

hasLabel(String) - Method in enum org.textensor.stochdiff.SDCalcType

hasLimits() - Method in class org.catacomb.graph.gui.DataView

hasLinkee() - Method in class org.catacomb.druid.xtext.base.WordBlock

hasModelScripts(File) - Method in interface org.catacomb.interlish.service.ScriptInfo

hasMultipleSources(String) - Method in class org.catacomb.druid.load.XMLStore

hasNeighbor(CellPoint) - Method in class org.catacomb.numeric.difnet.CellPoint

hasNeighbor(TreePoint) - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

hasNext() - Method in class org.catacomb.druid.xtext.base.Block

hasNonTrivialValue() - Method in class org.catacomb.interlish.content.StringValue

hasOffsetChildren() - Method in class org.textensor.stochdiff.model.MorphPoint

hasOffsetChildren() - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

hasPadding - Variable in class org.catacomb.druid.swing.RolloverEffect

hasPadding - Variable in class org.catacomb.graph.gui.RolloverEffect

hasPosition() - Method in class org.textensor.stochdiff.model.MorphPoint

hasPrevious() - Method in class org.catacomb.druid.xtext.base.Block

hasProviderOf(String) - Method in class org.catacomb.druid.load.DruidContentLoader

hasProviderOf(String) - Method in interface org.catacomb.interlish.service.ContentLoader

hasRef() - Method in class org.catacomb.graph.drawing.VectorIcon

hasRegion() - Method in class org.textensor.stochdiff.model.ConcentrationSet

hasRegion() - Method in class org.textensor.stochdiff.model.OutputSet

hasRegion() - Method in class org.textensor.stochdiff.model.SurfaceDensitySet

hasRelations() - Method in class org.catacomb.druid.xtext.data.PageDataStore

hasRelative(String) - Method in class org.catacomb.dataview.read.CustomJarContentReader

hasRelative(String) - Method in class org.catacomb.dataview.read.CustomJarReader

hasRelative(String) - Method in class org.catacomb.dataview.read.FileImportContext

hasRelative(String) - Method in class org.catacomb.dataview.read.FUImportContext

hasRelative(String) - Method in class org.catacomb.dataview.read.JarImportContext

hasRelay() - Method in class org.catacomb.druid.gui.edit.DruGCPanel

hasRelay() - Method in class org.catacomb.druid.gui.edit.DruMenu

hasRole(String, String) - Method in class org.catacomb.druid.load.RoleMap

hasRolePlayer(String, String) - Method in class org.catacomb.druid.load.DruidContentLoader

hasRunMappingFor(String) - Method in class org.catacomb.druid.load.DruidContentLoader

hasStateInformation() - Method in interface org.catacomb.interlish.structure.StateQueryable

hasSurfaceDensitiesFor(String) - Method in class org.textensor.stochdiff.model.InitialConditions

hasTablizerOf(String) - Method in class org.catacomb.druid.load.DruidContentLoader

hasTablizerOf(String) - Method in interface org.catacomb.interlish.service.ContentLoader

hasTag() - Method in class org.catacomb.interlish.content.DocumentedComponent

hasText() - Method in interface org.catacomb.interlish.structure.Element

hasText() - Method in class org.catacomb.serial.om.OmElement

hasTypeScripts(File) - Method in interface org.catacomb.interlish.service.ScriptInfo

hasValue(String, String) - Method in class org.catacomb.druid.load.DruidAppBase

hasValue(String, String) - Static method in class org.catacomb.interlish.service.AppPersist

hasValue(String, String) - Method in interface org.catacomb.interlish.service.AppPersistProvider

hasValueFor(String) - Method in class org.catacomb.druid.load.DruidAppBase

hasValueFor(String) - Static method in class org.catacomb.interlish.service.AppPersist

hasValueFor(String) - Method in interface org.catacomb.interlish.service.AppPersistProvider

hasView(String) - Method in class org.catacomb.graph.gui.ViewSet

haveGaussian - Variable in class org.textensor.stochdiff.numeric.math.MersenneTwister

headerize(String) - Method in class org.catacomb.xdoc.TextTagger

headerizers - Static variable in class org.catacomb.xdoc.TextTagger

headInfoPanel - Variable in class org.catacomb.druid.dialog.ProgressLogDialogController

Heading - Class in org.catacomb.interlish.content

Heading() - Constructor for class org.catacomb.interlish.content.Heading

Heading(double, double) - Constructor for class org.catacomb.interlish.content.Heading

headings - Variable in class org.catacomb.numeric.data.DataTable

height - Variable in class org.catacomb.dataview.build.Dataview

height - Variable in class org.catacomb.dataview.build.DVPanel

height - Variable in class org.catacomb.dataview.GraphMaker

height - Variable in class org.catacomb.dataview.model.LineGraph

height - Variable in class org.catacomb.druid.blocks.AssemblyPanel

height - Variable in class org.catacomb.druid.blocks.Canvas

height - Variable in class org.catacomb.druid.blocks.DataDisplay

height - Variable in class org.catacomb.druid.blocks.DrawingCanvas

height - Variable in class org.catacomb.druid.blocks.InfoPanel

height - Variable in class org.catacomb.druid.blocks.LogPanel

height - Variable in class org.catacomb.druid.blocks.MovieDisplay

height - Variable in class org.catacomb.druid.blocks.ScrollingInfoPanel

height - Variable in class org.catacomb.druid.blocks.TextArea

height - Variable in class org.catacomb.druid.swing.DDropCanvas

height - Variable in class org.catacomb.druid.xtext.base.TextFloat

height - Variable in class org.catacomb.druid.xtext.canvas.DataBoard

height - Variable in class org.catacomb.druid.xtext.canvas.TextBoard

height - Variable in class org.catacomb.graph.gui.Builder

height - Variable in class org.catacomb.graph.gui.WorldTransform

height - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

Helpable - Interface in org.catacomb.interlish.structure

For objects which can contain help text to be presented to the user on request.

heuristic - Variable in class org.catacomb.util.Diff

When set to true, the comparison uses a heuristic to speed it up.

hexString(Color) - Static method in class org.catacomb.util.ColorUtil

hexval - Variable in enum org.catacomb.datalish.ColorNames

Hidden - Class in org.catacomb.druid.blocks

Hidden() - Constructor for class org.catacomb.druid.blocks.Hidden

hide() - Method in class org.catacomb.druid.build.Druid

hide() - Method in class org.catacomb.druid.gui.base.DruAutonomousDialog

hide() - Method in class org.catacomb.druid.gui.base.DruEditorWindow

hide() - Method in class org.catacomb.icon.splash.Splash

hide() - Method in interface org.catacomb.interlish.structure.FrameShowable

HIDE - Static variable in class org.textensor.vis.SceneGraphViewer

HIDE_ROOT - Static variable in interface org.catacomb.interlish.structure.Tree

hideDialog() - Method in class org.catacomb.druid.dialog.DialogController

hideMenu() - Method in class org.catacomb.druid.swing.DPopLabel

hideOnClose - Variable in class org.catacomb.druid.gui.base.DruFrame

hideShape(Shape3D) - Method in class org.textensor.vis.SceneGraphViewer

hideSplash() - Static method in class org.catacomb.icon.splash.Splasher

HIGH - Static variable in interface org.textensor.vis.Visualizer

highlight() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

highlight - Variable in class org.catacomb.interlish.content.StringValue

highlightLabel(String) - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

highlightLine(int) - Method in class org.catacomb.druid.swing.DTextArea

highlightLine(int) - Method in class org.catacomb.interlish.content.StringValue

highlightPath(SegmentGraphPoint, SegmentGraphPoint) - Method in class org.catacomb.graph.arbor.SegmentGraph

highlightTrace(SegmentGraphPoint) - Method in class org.catacomb.graph.arbor.SegmentGraph

highlightTree(SegmentGraphPoint, SegmentGraphPoint) - Method in class org.catacomb.graph.arbor.SegmentGraph

Historiable - Interface in org.catacomb.interlish.structure

HistoriableContainer - Interface in org.catacomb.interlish.structure

HistoriablePrimitive - Interface in org.catacomb.interlish.structure

history - Variable in class org.catacomb.druid.blocks.LabelledTextField

hmap - Variable in class org.catacomb.druid.util.FileChooser

HoldLastScalarFunction - Class in org.catacomb.numeric.function

HoldLastScalarFunction(double, double) - Constructor for class org.catacomb.numeric.function.HoldLastScalarFunction

hookupBoard - Variable in class org.catacomb.druid.build.Context

hookupBoard - Variable in class org.catacomb.druid.build.DruidTargetStore

HookupBoard - Class in org.catacomb.druid.market

HookupBoard() - Constructor for class org.catacomb.druid.market.HookupBoard

HORIZ_CURSOR - Static variable in class org.catacomb.druid.swing.split.DSplitterBar

horizontal - Variable in class org.catacomb.druid.blocks.ScrollPanel

HORIZONTAL - Static variable in class org.catacomb.druid.gui.base.DruBoxPanel

HORIZONTAL - Static variable in class org.catacomb.druid.gui.base.DruFloatBoxPanel

HORIZONTAL - Static variable in class org.catacomb.druid.gui.base.DruMultiSplitPanel

HORIZONTAL - Static variable in class org.catacomb.druid.swing.DBoxPanel

HORIZONTAL - Static variable in class org.catacomb.druid.swing.split.SplitterLayout

HorizontalAxisAxisDivider - Class in org.catacomb.graph.gui

HorizontalAxisAxisDivider(BasicSplitPaneUI, GraphColors) - Constructor for class org.catacomb.graph.gui.HorizontalAxisAxisDivider

HorizontalAxisGraphDivider - Class in org.catacomb.graph.gui

HorizontalAxisGraphDivider(BasicSplitPaneUI, GraphColors) - Constructor for class org.catacomb.graph.gui.HorizontalAxisGraphDivider

HorizontalBoxPanel - Class in org.catacomb.druid.blocks

HorizontalBoxPanel() - Constructor for class org.catacomb.druid.blocks.HorizontalBoxPanel

hotspot - Variable in class org.catacomb.druid.swing.DCheckboxList

hotspot - Variable in class org.catacomb.druid.swing.DCheckboxTree

hover - Variable in class org.catacomb.druid.blocks.AbstractButton

hover(Object) - Method in class org.catacomb.druid.xtext.edit.XTypeTree

hovered() - Method in class org.catacomb.graph.gui.PickHandler

hoverItem - Variable in class org.catacomb.graph.gui.PickHandler

hoverOver(int, int) - Method in class org.catacomb.druid.swing.dnd.RegionStore

hoverOverRegion - Variable in class org.catacomb.druid.swing.dnd.RegionStore

HoverTimer - Class in org.catacomb.graph.gui

HoverTimer(PickHandler) - Constructor for class org.catacomb.graph.gui.HoverTimer

hoverType - Variable in class org.catacomb.druid.xtext.edit.XTypeTree

HSIZE - Static variable in class org.catacomb.movie.gif.LZWEncoder

hsize - Variable in class org.catacomb.movie.gif.LZWEncoder

htab - Variable in class org.catacomb.movie.gif.LZWEncoder

hTimer - Variable in class org.catacomb.graph.gui.PickHandler

htmlBuffer - Variable in class org.catacomb.druid.guimodel.Log

HTMLContent - Class in org.catacomb.druid.blocks

HTMLContent() - Constructor for class org.catacomb.druid.blocks.HTMLContent

htmlEditorKit - Variable in class org.catacomb.druid.swing.DEditorPane

htmlEditorKit - Variable in class org.catacomb.druid.swing.DHTMLPane

htmlizeParagraph(String) - Method in class org.catacomb.xdoc.TextTagger

HTMLPage - Class in org.catacomb.xdoc

HTMLPage() - Constructor for class org.catacomb.xdoc.HTMLPage

HTMLPage(String) - Constructor for class org.catacomb.xdoc.HTMLPage

HTMLPage(String, int) - Constructor for class org.catacomb.xdoc.HTMLPage

htmlPageText - Variable in class org.catacomb.xdoc.HTMLPage

htmlPane - Variable in class org.catacomb.druid.gui.base.DruBrowserPanel

htmlPane - Variable in class org.catacomb.druid.gui.base.DruInfoPanel

htmlPane - Variable in class org.catacomb.druid.gui.edit.DruLogPanel

HTMLPanel - Class in org.catacomb.druid.blocks

HTMLPanel() - Constructor for class org.catacomb.druid.blocks.HTMLPanel

htmlPanel - Variable in class org.catacomb.druid.dialog.TextDialogController

htmlStyle - Variable in class org.catacomb.druid.gui.base.DruLabelPanel

htmlTemplate - Variable in class org.catacomb.druid.gui.base.DruBrowserPanel

htmlTemplate - Variable in class org.catacomb.druid.gui.base.DruInfoPanel

htmlTemplate - Variable in class org.catacomb.xdoc.HTMLPage

htmlText - Variable in class org.catacomb.druid.guimodel.LogEntry

htmlWrap(String) - Method in class org.catacomb.xdoc.TextTagger

hunkfun(Diff.change) - Method in class org.catacomb.util.DiffPrint.Base

Called with the tail of the script and returns the last link that belongs together with the start of the tail.

hx - Variable in class org.catacomb.graph.gui.WorldTransform

hx - Variable in class org.catacomb.interlish.content.Heading

hy - Variable in class org.catacomb.graph.gui.WorldTransform

hy - Variable in class org.catacomb.interlish.content.Heading

hyperlinkClicked(String) - Method in class org.catacomb.druid.gui.base.DruLinkHandler

hyperlinkClicked(String) - Method in class org.catacomb.druid.gui.edit.DruHTMLPanel

hyperlinkClicked(String) - Method in interface org.catacomb.interlish.structure.HyperlinkHandler

hyperlinkHandler - Variable in class org.catacomb.druid.swing.DHTMLPane

HyperlinkHandler - Interface in org.catacomb.interlish.structure

hyperlinkUpdate(HyperlinkEvent) - Method in class org.catacomb.druid.swing.DHTMLPane

I

ia - Static variable in class org.catacomb.numeric.math.Random

ia - Static variable in class org.textensor.stochdiff.numeric.math.NRRandom

iabc - Static variable in class org.catacomb.serial.xml.XMLTokenizer

iabc - Static variable in class org.textensor.xml.XMLTokenizer

iabo - Static variable in class org.catacomb.serial.xml.XMLTokenizer

iabo - Static variable in class org.textensor.xml.XMLTokenizer

iactive - Variable in class org.catacomb.druid.swing.RolloverEffect

iactive - Variable in class org.catacomb.graph.gui.RolloverEffect

iazimuthal - Variable in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

IBIG - Static variable in class org.catacomb.graph.gui.WorldTransform

ibut - Variable in class org.catacomb.graph.gui.CornerPanel

ic - Static variable in class org.catacomb.numeric.math.Random

ic - Static variable in class org.textensor.stochdiff.numeric.math.NRRandom

icache - Variable in class org.catacomb.graph.gui.PickableRegion

icache - Variable in class org.textensor.stochdiff.numeric.morph.VolumeElement

icall - Variable in class org.catacomb.numeric.difnet.calc.NetDiffuser

icenter - Variable in class org.textensor.stochdiff.numeric.morph.VolumeSlice

Icing3DViewer - Class in org.textensor.vis

Icing3DViewer() - Constructor for class org.textensor.vis.Icing3DViewer

IcingPoint - Class in org.textensor.vis

IcingPoint(double, double, double, double) - Constructor for class org.textensor.vis.IcingPoint

IcingPoint(double, double, double, double, IcingPoint) - Constructor for class org.textensor.vis.IcingPoint

icolor - Static variable in class org.catacomb.druid.xtext.base.Guise

icon - Variable in class org.catacomb.graph.drawing.IconWrapper

icon - Variable in class org.textensor.stochdiff.reduce.Reducer

IconButton - Class in org.catacomb.graph.gui

IconButton(String, int, IntActor) - Constructor for class org.catacomb.graph.gui.IconButton

iconChangedIn(Object) - Method in interface org.catacomb.interlish.interact.IconWatcher

IconEditorController - Class in org.catacomb.graph.drawing

IconEditorController() - Constructor for class org.catacomb.graph.drawing.IconEditorController

IconImage - Class in org.catacomb.graph.drawing

IconImage(BufferedImage) - Constructor for class org.catacomb.graph.drawing.IconImage

IconImageCache - Class in org.catacomb.graph.drawing

IconImageCache() - Constructor for class org.catacomb.graph.drawing.IconImageCache

Iconizer - Class in org.catacomb.graph.gui

Iconizer() - Constructor for class org.catacomb.graph.gui.Iconizer

IconLoader - Class in org.catacomb.icon

IconLoader() - Constructor for class org.catacomb.icon.IconLoader

IconRadioButton - Class in org.catacomb.graph.gui

IconRadioButton(String, int, IntActor) - Constructor for class org.catacomb.graph.gui.IconRadioButton

IconRoot - Class in org.catacomb.icon.images

IconRoot() - Constructor for class org.catacomb.icon.images.IconRoot

icons - Variable in class org.catacomb.druid.gui.base.DruImageLabelPanel

icons - Static variable in class org.catacomb.icon.IconLoader

IconSwitcher - Class in org.catacomb.druid.gui.edit

IconSwitcher(DruButton) - Constructor for class org.catacomb.druid.gui.edit.IconSwitcher

IconWatcher - Interface in org.catacomb.interlish.interact

IconWrapper - Class in org.catacomb.graph.drawing

IconWrapper(VectorIcon, double, double, double) - Constructor for class org.catacomb.graph.drawing.IconWrapper

ICTest - Class in org.textensor.stochdiff.examples.ictest

ICTest() - Constructor for class org.textensor.stochdiff.examples.ictest.ICTest

id - Variable in class org.catacomb.be.StructElement

id - Variable in class org.catacomb.datalish.SpriteMarker

id - Variable in class org.catacomb.dataview.display.ViewConfig

id - Variable in class org.catacomb.dataview.model.View

id - Variable in class org.catacomb.druid.blocks.Application

id - Variable in class org.catacomb.druid.blocks.AutonomousDialog

id - Variable in class org.catacomb.druid.blocks.AutonomousPanel

id - Variable in class org.catacomb.druid.blocks.CheckboxMenuItem

id - Variable in class org.catacomb.druid.blocks.Dialog

id - Variable in class org.catacomb.druid.blocks.EditorWindow

id - Variable in class org.catacomb.druid.blocks.Frame

id - Variable in class org.catacomb.druid.blocks.Insert

id - Variable in class org.catacomb.druid.blocks.Menu

id - Variable in class org.catacomb.druid.blocks.MenuBar

id - Variable in class org.catacomb.druid.blocks.MenuItem

id - Variable in class org.catacomb.druid.blocks.Panel

id - Variable in class org.catacomb.druid.blocks.Requisite

id - Variable in class org.catacomb.druid.gui.base.DruAutonomousPanel

id - Variable in class org.catacomb.druid.gui.base.DruDialog

id - Variable in class org.catacomb.druid.gui.base.DruFrame

id - Variable in class org.catacomb.druid.gui.base.DruMenuBar

id - Variable in class org.catacomb.druid.gui.base.DruPanel

id - Variable in class org.catacomb.druid.gui.edit.DruMenu

id - Variable in class org.catacomb.druid.market.HookupBoard

id - Variable in class org.catacomb.druid.xtext.base.Guise

id - Variable in class org.catacomb.druid.xtext.base.Slot

id - Variable in class org.catacomb.druid.xtext.data.XRelationType

id - Variable in class org.catacomb.druid.xtext.data.XType

id - Variable in class org.catacomb.graph.arbor.SGAttachmentPoint

id - Variable in class org.catacomb.graph.gui.DataView

id - Variable in class org.catacomb.graph.gui.DisplayStyleSet

id - Variable in class org.catacomb.graph.gui.ViewSet

id - Variable in class org.catacomb.interlish.content.DocumentedComponent

id - Variable in class org.catacomb.numeric.data.DataTable

id - Variable in class org.catacomb.numeric.data.DVector

id - Variable in class org.catacomb.numeric.difnet.model.PointRecorder

id - Variable in class org.catacomb.numeric.difnet.model.PointStim

id - Variable in class org.textensor.stochdiff.model.Reaction

id - Variable in class org.textensor.stochdiff.model.Segment

id - Variable in class org.textensor.stochdiff.model.Specie

id - Variable in class org.textensor.stochdiff.model.SpineAllocation

id - Variable in class org.textensor.stochdiff.model.SpineType

id - Variable in class org.textensor.stochdiff.neuroml.cable

id - Variable in class org.textensor.stochdiff.neuroml.morphml

id - Variable in class org.textensor.stochdiff.neuroml.MorphMLPoint

id - Variable in class org.textensor.stochdiff.neuroml.segment

id - Variable in class org.textensor.stochdiff.numeric.morph.SpinePopulation

id - Variable in class org.textensor.stochdiff.numeric.morph.SpineProfile

id - Variable in class org.textensor.vis.IcingPoint

id - Variable in class org.textensor.vis.SceneItem

IDable - Interface in org.catacomb.interlish.structure

IDd - Interface in org.catacomb.interlish.structure

IDdResolvable - Interface in org.catacomb.interlish.structure

Identifiable - Interface in org.catacomb.interlish.structure

Identified - Interface in org.catacomb.interlish.structure

IdentifierLabel - Interface in org.catacomb.interlish.structure

identise() - Method in class org.catacomb.numeric.math.Matrix

identise() - Method in class org.textensor.stochdiff.numeric.math.Matrix

identity() - Method in class org.catacomb.numeric.math.Matrix

identity() - Method in class org.textensor.stochdiff.numeric.math.Matrix

IDer - Interface in org.catacomb.interlish.structure

idIndex - Variable in class org.catacomb.numeric.mesh.DifMeshPoint

idInParent - Variable in class org.catacomb.druid.xtext.base.Block

idir - Variable in class org.catacomb.druid.gui.base.DruBoxPanel

ieq - Static variable in class org.catacomb.serial.xml.XMLTokenizer

ieq - Static variable in class org.textensor.xml.XMLTokenizer

ierr - Static variable in class org.catacomb.numeric.difnet.model.BasicNetState

IERROR - Static variable in class org.catacomb.numeric.difnet.calc.NetDiffuser

iexc - Static variable in class org.catacomb.serial.xml.XMLTokenizer

iexc - Static variable in class org.textensor.xml.XMLTokenizer

ignore - Variable in class org.catacomb.druid.swing.DRadioButton

ignore - Variable in class org.catacomb.util.DiffPrint.Base

Set to ignore certain kinds of lines when printing an edit script.

ignoreChanges - Variable in class org.catacomb.druid.swing.DTextArea

ignoreEvents - Variable in class org.catacomb.druid.swing.DTextField

ignoreMoves - Variable in class org.catacomb.graph.gui.AboveBelowSplitPanel

iin - Variable in class org.catacomb.movie.gif.ByteAccumulator

ilabel - Variable in class org.catacomb.dataview.build.Line

ilang - Variable in class org.catacomb.druid.swing.DCheckboxMenuItem

ilang - Variable in class org.catacomb.druid.swing.DMenuItem

im - Static variable in class org.catacomb.numeric.math.Random

im - Static variable in class org.textensor.stochdiff.numeric.math.NRRandom

image - Variable in class org.catacomb.dataview.GraphMaker

image - Variable in class org.catacomb.druid.blocks.AbstractButton

image - Variable in class org.catacomb.graph.drawing.IconImage

image - Variable in class org.catacomb.icon.splash.SplashWindow

image - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

image32x32HM - Variable in class org.catacomb.graph.drawing.IconImageCache

image48x48HM - Variable in class org.catacomb.graph.drawing.IconImageCache

ImageDragSource - Interface in org.catacomb.druid.swing

ImageLabel - Class in org.catacomb.druid.blocks

ImageLabel() - Constructor for class org.catacomb.druid.blocks.ImageLabel

ImageMaker - Class in org.catacomb.dataview

ImageMaker() - Constructor for class org.catacomb.dataview.ImageMaker

ImageUtil - Class in org.catacomb.util

ImageUtil() - Constructor for class org.catacomb.util.ImageUtil

imax - Static variable in class org.catacomb.druid.swing.DFillGuage

imax - Static variable in class org.catacomb.druid.swing.DProgressReport

imgH - Variable in class org.catacomb.movie.gif.LZWEncoder

imgOffset - Variable in class org.catacomb.druid.swing.DTreeDragSource

imgsrc - Variable in class org.catacomb.icon.splash.Splash

imgW - Variable in class org.catacomb.movie.gif.LZWEncoder

implementsNames - Variable in class org.catacomb.act.Classdef

ImplicitEulerPoolCalc - Class in org.textensor.stochdiff.numeric.pool

ImplicitEulerPoolCalc(SDRun) - Constructor for class org.textensor.stochdiff.numeric.pool.ImplicitEulerPoolCalc

importContext - Variable in class org.catacomb.dataview.read.BaseContentReader

importContext - Variable in class org.catacomb.interlish.reflect.ReflectionConstructor

ImportContext - Interface in org.catacomb.interlish.resource

Importer - Class in org.catacomb.dataview.read

Importer() - Constructor for class org.catacomb.dataview.read.Importer

ImportException - Exception in org.textensor.stochdiff.neuroml

ImportException() - Constructor for exception org.textensor.stochdiff.neuroml.ImportException

importFile(File) - Static method in class org.catacomb.dataview.read.Importer

importLines(ArrayList<VolumeLine>) - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

imports - Variable in class org.catacomb.act.Classdef

importSlices(ArrayList<VolumeSlice>) - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

importSmoothSlices(ArrayList<CurvedVolumeSlice>) - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

importURL(URL) - Static method in class org.catacomb.dataview.read.Importer

ims - Static variable in class org.catacomb.serial.xml.XMLTokenizer

ims - Static variable in class org.textensor.xml.XMLTokenizer

IN - Static variable in class org.catacomb.graph.gui.ClickZoomHandler

IN - Static variable in class org.catacomb.graph.gui.MouseHandler

inClasspath() - Method in class org.catacomb.druid.manifest.DecFile

increment() - Method in class org.catacomb.be.TimePoint

Increment - Interface in org.catacomb.interlish.structure

increment(int, double) - Method in class org.textensor.stochdiff.numeric.math.Column

incrementArea(double) - Method in class org.catacomb.numeric.difnet.model.BasicStructureNode

incrementBy(double) - Method in class org.textensor.stochdiff.numeric.math.Column

incrementBy(double[]) - Method in class org.textensor.stochdiff.numeric.math.Column

incrementBy(Column) - Method in class org.textensor.stochdiff.numeric.math.Column

indeterminate - Variable in class org.catacomb.druid.gui.edit.DruProgressReport

index - Variable in class org.catacomb.dataview.formats.SWCDisplay.Node

index - Variable in class org.catacomb.graph.drawing.ShapePoint

index - Variable in class org.catacomb.numeric.data.DDSubSlice

index - Variable in class org.catacomb.numeric.difnet.calc.NetMapNode

index - Variable in class org.catacomb.numeric.difnet.CellPoint

index - Variable in class org.textensor.stochdiff.model.Specie

indexedPixels - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

indexes - Variable in class org.catacomb.dataview.FrameController

indexes - Variable in class org.catacomb.dataview.gui.FramePlayerController

indexOf(String) - Method in class org.catacomb.interlish.content.QuantifiedListValue

indexPoints() - Method in class org.catacomb.graph.arbor.SegmentGraph

indexSpecies() - Method in class org.textensor.stochdiff.model.ReactionScheme

indexTable - Variable in class org.catacomb.numeric.mesh.DifMesh

inewid - Variable in class org.catacomb.interlish.content.KeyedList

inFileSystem() - Method in class org.catacomb.druid.manifest.DecFile

info - Variable in class org.catacomb.act.Classdef

info - Variable in class org.catacomb.act.FunctionSignature

info - Variable in class org.catacomb.act.MethodSignature

info - Variable in class org.catacomb.act.MethodStub

info - Variable in class org.catacomb.druid.blocks.CheckboxMenuItem

info - Variable in class org.catacomb.druid.blocks.Frame

info - Variable in class org.catacomb.druid.blocks.InitialInfo

info - Variable in class org.catacomb.druid.blocks.MenuItem

info - Variable in class org.catacomb.druid.blocks.Panel

info - Variable in class org.catacomb.druid.gui.base.DruPanel

info - Variable in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

info - Variable in class org.catacomb.druid.gui.edit.DruMenuItem

info - Variable in class org.catacomb.interlish.content.DocumentedComponent

INFO - Static variable in interface org.catacomb.interlish.structure.InfoMessage

INFO - Static variable in class org.catacomb.report.E

info(String) - Static method in class org.catacomb.report.E

info(String) - Static method in class org.textensor.report.E

Infoable - Interface in org.catacomb.interlish.structure

infoAggregator - Static variable in class org.catacomb.druid.build.Context

InfoAggregator - Class in org.catacomb.druid.build

InfoAggregator() - Constructor for class org.catacomb.druid.build.InfoAggregator

InfoBoard - Class in org.catacomb.druid.market

InfoBoard() - Constructor for class org.catacomb.druid.market.InfoBoard

InfoButton - Class in org.catacomb.druid.blocks

InfoButton() - Constructor for class org.catacomb.druid.blocks.InfoButton

inFocus - Variable in class org.catacomb.druid.swing.dnd.RegionBoard

Infod - Interface in org.catacomb.interlish.structure

InfoDisplay - Interface in org.catacomb.druid.gui.base

Infoer - Interface in org.catacomb.interlish.structure

InfoExporter - Interface in org.catacomb.interlish.structure

infoLog - Variable in class org.catacomb.druid.gui.edit.DruLoggedButton

infoLog - Variable in class org.catacomb.druid.gui.edit.DruLogPanel

InfoLog - Interface in org.catacomb.interlish.structure

InfoMessage - Interface in org.catacomb.interlish.structure

infoMsg(String, String) - Static method in class org.catacomb.druid.guimodel.Log

infoMsg(String, String) - Static method in class org.catacomb.interlish.report.UserLog

InfoPanel - Class in org.catacomb.druid.blocks

InfoPanel() - Constructor for class org.catacomb.druid.blocks.InfoPanel

infoPanel - Variable in class org.catacomb.druid.dialog.ConfirmationDialogController

infoPanel - Variable in class org.catacomb.druid.dialog.FolderDialogController

infoPanel - Variable in class org.catacomb.druid.dialog.MessageDialogController

infoPanel - Variable in class org.catacomb.druid.dialog.NamingDialogController

infoPanel - Variable in class org.catacomb.druid.dialog.QuestionDialogController

infoReceiver - Variable in class org.catacomb.druid.build.DruidTargetStore

infoReceiver - Variable in class org.catacomb.druid.build.GUIStore

infoReceiver - Variable in class org.catacomb.druid.build.InfoAggregator

infoReceiver - Variable in class org.catacomb.druid.gui.base.DruInfoEffect

infoReceiver - Variable in class org.catacomb.druid.gui.base.DruPanel

infoReceiver - Variable in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

infoReceiver - Variable in class org.catacomb.druid.gui.edit.DruMenuItem

InfoReceiver - Interface in org.catacomb.interlish.structure

InfoSource - Interface in org.catacomb.druid.gui.base

infoText - Variable in class org.catacomb.druid.gui.base.DruInfoEffect

infoText - Variable in class org.catacomb.druid.swing.DRadioButton

infoTime(String) - Static method in class org.catacomb.report.E

infoTime(String) - Static method in class org.textensor.report.E

infoTitle - Variable in class org.catacomb.druid.gui.base.DruInfoEffect

InfoWorker - Interface in org.catacomb.interlish.structure

inhibit - Variable in class org.catacomb.util.Diff

INIT - Static variable in interface org.catacomb.act.BlockSignature

init() - Method in class org.catacomb.dataview.AppletDataViewer

init(String) - Method in class org.catacomb.druid.dialog.ProgressLogDialogController

init() - Method in class org.catacomb.druid.gui.base.DruBrowserPanel

init() - Static method in class org.catacomb.druid.gui.base.DruTooltips

init() - Static method in class org.catacomb.druid.load.DruidAppBase

init(String, Object) - Static method in class org.catacomb.druid.load.DruidAppBase

init(Object) - Method in class org.catacomb.druid.load.DruidContentLoader

init() - Method in class org.catacomb.druid.manifest.DecManifest

init() - Method in class org.catacomb.druid.swing.DTree

init(ArrayList<Related>) - Method in class org.catacomb.druid.util.tree.RelationTree

init() - Method in class org.catacomb.graph.drawing.SegmentLine

init(Mouse) - Method in class org.catacomb.graph.gui.BoxSelectionHandler

init(Mouse) - Method in class org.catacomb.graph.gui.ClickZoomHandler

init(Mouse) - Method in class org.catacomb.graph.gui.MouseHandler

init(Mouse) - Method in class org.catacomb.graph.gui.PanHandler

init(Mouse) - Method in class org.catacomb.graph.gui.PickHandler

init(Mouse) - Method in class org.catacomb.graph.gui.RollHandler

init(Mouse) - Method in class org.catacomb.graph.gui.TurntableHandler

init(Mouse) - Method in class org.catacomb.graph.gui.TurnZoomHandler

init() - Method in class org.catacomb.graph.gui.ZoneDemo

init(String) - Method in interface org.catacomb.interlish.report.Logger

init(String) - Method in class org.catacomb.interlish.report.PrintLogger

init(NetStructure) - Method in class org.catacomb.numeric.difnet.calc.NetDiffuser

initialise the internal mapping of the network geometry.

init(NetStructure) - Method in interface org.catacomb.numeric.difnet.DiffusionCalculator

Initialises the internal representation of the network structure.

init() - Method in class org.catacomb.xdoc.TextTagger

init() - Method in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

init() - Method in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

init() - Method in class org.textensor.stochdiff.numeric.pool.DeterministicPoolCalc

init() - Method in class org.textensor.stochdiff.numeric.StaticCalc

init() - Method in class org.textensor.stochdiff.numeric.tmp.Tmp1A

init(String, int) - Method in class org.textensor.stochdiff.ResultWriter

initalpha - Static variable in class org.catacomb.movie.gif.NeuQuant

initCodeSize - Variable in class org.catacomb.movie.gif.LZWEncoder

initData(ContentReader) - Method in class org.catacomb.dataview.DataviewController

initDataSource() - Method in class org.catacomb.dataview.DataviewController

initFile - Variable in class org.catacomb.druid.dialog.FolderDialogController

initFromRow(Row) - Method in interface org.catacomb.interlish.structure.RowPeer

initFromTable(Table) - Method in class org.catacomb.graph.drawing.Shape

initFromTable(Table) - Method in interface org.catacomb.interlish.structure.TablePeer

initial - Variable in class org.catacomb.druid.blocks.Checkbox

initial - Variable in class org.catacomb.druid.blocks.ToggleButton

InitialConditions - Class in org.textensor.stochdiff.model

InitialConditions() - Constructor for class org.textensor.stochdiff.model.InitialConditions

initialConditions - Variable in class org.textensor.stochdiff.model.SDRun

initialConditionsFile - Variable in class org.textensor.stochdiff.model.SDRun

InitialInfo - Class in org.catacomb.druid.blocks

InitialInfo() - Constructor for class org.catacomb.druid.blocks.InitialInfo

initialize(Color) - Static method in class org.catacomb.druid.gui.base.UIColors

initializeRotation(int, int) - Method in class org.catacomb.graph.gui.Mouse

initializeRotation(double, double, double) - Method in class org.catacomb.graph.gui.Mouse

initializeRotation(int, int) - Method in class org.catacomb.graph.gui.WorldCanvas

initializeRotation(double, double, double) - Method in class org.catacomb.graph.gui.WorldCanvas

initializeRotation(int, int) - Method in class org.catacomb.graph.gui.WorldTransform

initializeRotation(double, double, double) - Method in class org.catacomb.graph.gui.WorldTransform

initializeRotationLocal(double, double, double) - Method in class org.catacomb.graph.gui.WorldTransform

initializeStreamTokenizer(StreamTokenizer) - Method in class org.catacomb.serial.xml.XMLTokenizer

initializeStreamTokenizer(StreamTokenizer) - Method in class org.textensor.xml.XMLTokenizer

initializeZoom(int, int) - Method in class org.catacomb.graph.gui.Mouse

initializeZoom(int, int) - Method in class org.catacomb.graph.gui.WorldCanvas

initializeZoom(int, int) - Method in class org.catacomb.graph.gui.WorldTransform

initialStateFile - Variable in class org.textensor.stochdiff.model.SDRun

initialValue - Variable in class org.catacomb.numeric.difnet.model.BasicStructureNode

initiateDrag(Region, Point, DragGestureEvent) - Method in class org.catacomb.druid.swing.dnd.RegionDragSource

initLabels(Box) - Method in class org.catacomb.graph.gui.Labeller

initLevels() - Static method in class org.catacomb.report.E

initLoader(Object) - Static method in class org.catacomb.druid.load.DruidContentLoader

initPickable() - Method in class org.catacomb.graph.drawing.Shape

initrad - Static variable in class org.catacomb.movie.gif.NeuQuant

initradius - Static variable in class org.catacomb.movie.gif.NeuQuant

initSlices(RunDataBlock) - Method in class org.catacomb.numeric.data.BlockStack

injectionSite - Variable in class org.textensor.stochdiff.model.InjectionStim

InjectionStim - Class in org.textensor.stochdiff.model

InjectionStim() - Constructor for class org.textensor.stochdiff.model.InjectionStim

innerMesh - Variable in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

innerPolygon(double[], double[]) - Static method in class org.catacomb.graph.gui.Geom

inormal - Variable in class org.catacomb.druid.swing.RolloverEffect

inormal - Variable in class org.catacomb.graph.gui.RolloverEffect

INOUT - Static variable in class org.catacomb.graph.gui.ClickZoomHandler

INPUT - Static variable in interface org.catacomb.interlish.structure.Plug

insert(DruPanel, DruBorderPanel) - Method in class org.catacomb.druid.blocks.Center

insert(DruPanel, DruBorderPanel) - Method in class org.catacomb.druid.blocks.East

insert(DruPanel, DruBorderPanel) - Method in class org.catacomb.druid.blocks.Hidden

Insert - Class in org.catacomb.druid.blocks

Insert() - Constructor for class org.catacomb.druid.blocks.Insert

insert(DruPanel, DruBorderPanel) - Method in class org.catacomb.druid.blocks.North

insert(DruPanel, DruBorderPanel) - Method in class org.catacomb.druid.blocks.PanelInserter

insert(DruPanel, DruBorderPanel) - Method in class org.catacomb.druid.blocks.South

insert(DruPanel, DruBorderPanel) - Method in class org.catacomb.druid.blocks.West

insert(TextBlock, int) - Method in class org.catacomb.druid.xtext.base.TextBlock

insertCharacter(char, int) - Method in class org.catacomb.druid.xtext.base.TextBlock

insertCharacter(char) - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

inserted - Variable in class org.catacomb.util.Diff.change

# lines of file 1 changed here.

inserters - Variable in class org.catacomb.druid.blocks.BorderPanel

insertLetter(char) - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

insertLetterAfterNonWord(TextBlock, char) - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

insertLetterBeforeNonWord(TextBlock, char) - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

insertLetterInNonWord(TextBlock, char, int) - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

insertLetterInWord(TextBlock, char, int) - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

insertNewline(int) - Method in class org.catacomb.druid.xtext.base.TextBlock

insertParagraph(StringBuffer, String) - Method in class org.catacomb.xdoc.TextTagger

insertPuncAfterNonPunc(TextBlock, char) - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

insertPuncBeforeNonPunc(TextBlock, char) - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

insertPuncInNonPunc(TextBlock, char, int) - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

insertPuncInPunc(TextBlock, char, int) - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

insertPunctuation(char) - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

inserts - Variable in class org.catacomb.util.DiffPrint.Base

insertUnder(RelationNode, RelationNode, ArrayList, String) - Method in class org.catacomb.druid.util.tree.RelationNode

insertUpdate(DocumentEvent) - Method in class org.catacomb.druid.swing.DTextArea

insertUpdate(DocumentEvent) - Method in class org.catacomb.druid.swing.DTextField

installDependency() - Method in interface org.catacomb.interlish.structure.DependencyInstaller

installUI(JComponent) - Method in class org.catacomb.druid.swing.ui.DruidTreeUI

instance - Static variable in class org.catacomb.druid.load.DruidAppBase

instance - Static variable in class org.catacomb.druid.swing.dnd.DragAndDrop

instance() - Static method in class org.catacomb.druid.xtext.canvas.FontStore

instance() - Static method in class org.catacomb.druid.xtext.data.XTypeStore

instance - Static variable in class org.catacomb.graph.gui.DataViewStore

instance - Static variable in class org.catacomb.graph.gui.DisplayStylesData

instance - Static variable in class org.catacomb.interlish.report.Focus

instance - Static variable in class org.catacomb.interlish.report.Status

instance - Static variable in class org.catacomb.interlish.service.ActionManager

instance - Static variable in class org.catacomb.interlish.service.ScriptManager

instance - Static variable in class org.textensor.stochdiff.numeric.stochastic.BinomialTable

instanceHideSplash() - Method in class org.catacomb.icon.splash.Splasher

instantiatePanel() - Method in class org.catacomb.druid.blocks.AssemblyPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.BorderPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.BoxPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.BrowserPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.Button

instantiatePanel() - Method in class org.catacomb.druid.blocks.Canvas

instantiatePanel() - Method in class org.catacomb.druid.blocks.CardPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.CenterFlowPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.Checkbox

instantiatePanel() - Method in class org.catacomb.druid.blocks.CheckboxList

instantiatePanel() - Method in class org.catacomb.druid.blocks.CheckboxTree

instantiatePanel() - Method in class org.catacomb.druid.blocks.Choice

instantiatePanel() - Method in class org.catacomb.druid.blocks.CollapsiblePanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.ColorChoice

instantiatePanel() - Method in class org.catacomb.druid.blocks.ContainerPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.DashedLine

instantiatePanel() - Method in class org.catacomb.druid.blocks.DataDisplay

instantiatePanel() - Method in class org.catacomb.druid.blocks.DrawingCanvas

instantiatePanel() - Method in class org.catacomb.druid.blocks.DropBox

instantiatePanel() - Method in class org.catacomb.druid.blocks.ExpandingTextArea

instantiatePanel() - Method in class org.catacomb.druid.blocks.FillGuage

instantiatePanel() - Method in class org.catacomb.druid.blocks.FloatBoxPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.FloatSlider

instantiatePanel() - Method in class org.catacomb.druid.blocks.FormPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.GridPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.HorizontalBoxPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.HTMLPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.ImageLabel

instantiatePanel() - Method in class org.catacomb.druid.blocks.InfoButton

instantiatePanel() - Method in class org.catacomb.druid.blocks.InfoPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.IntSlider

instantiatePanel() - Method in class org.catacomb.druid.blocks.KitPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.Label

instantiatePanel() - Method in class org.catacomb.druid.blocks.LabelledTextField

instantiatePanel() - Method in class org.catacomb.druid.blocks.LeftFlowPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.LeftRightSplitPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.List

instantiatePanel() - Method in class org.catacomb.druid.blocks.LoggedButton

instantiatePanel() - Method in class org.catacomb.druid.blocks.LogPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.MenuButton

instantiatePanel() - Method in class org.catacomb.druid.blocks.MovieDisplay

instantiatePanel() - Method in class org.catacomb.druid.blocks.Panel

instantiatePanel() - Method in class org.catacomb.druid.blocks.Placeholder

instantiatePanel() - Method in class org.catacomb.druid.blocks.ProgressReport

instantiatePanel() - Method in class org.catacomb.druid.blocks.RadioButtons

instantiatePanel() - Method in class org.catacomb.druid.blocks.RightFlowPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.ScratchPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.ScrollableBorderPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.ScrollableTextPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.ScrollingCheckboxList

instantiatePanel() - Method in class org.catacomb.druid.blocks.ScrollingHTMLPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.ScrollingInfoPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.ScrollingList

instantiatePanel() - Method in class org.catacomb.druid.blocks.ScrollPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.SimpleSlider

instantiatePanel() - Method in class org.catacomb.druid.blocks.Slider

instantiatePanel() - Method in class org.catacomb.druid.blocks.StatusBar

instantiatePanel() - Method in class org.catacomb.druid.blocks.TabbedPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.TextArea

instantiatePanel() - Method in class org.catacomb.druid.blocks.TextField

instantiatePanel() - Method in class org.catacomb.druid.blocks.TextPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.ToggleButton

instantiatePanel() - Method in class org.catacomb.druid.blocks.ToggleList

instantiatePanel() - Method in class org.catacomb.druid.blocks.TreePanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.UpDownSplitPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.VariableSizeCardPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.VerticalBoxPanel

instantiatePanel() - Method in class org.catacomb.druid.blocks.VerticalMultiSplitPanel

Instantiator - Interface in org.catacomb.be

instantiator - Variable in class org.catacomb.interlish.reflect.ObjectBuilder

instantiator - Variable in class org.catacomb.interlish.reflect.ReflectionConstructor

instantiator - Variable in class org.catacomb.serial.xml.XMLReader

instantiator - Variable in class org.textensor.xml.XMLReader

instruct(Painter, int) - Method in class org.catacomb.dataview.build.Crosshairs

instruct(Painter, int) - Method in class org.catacomb.dataview.build.Disc

instruct(Painter, int) - Method in class org.catacomb.dataview.build.Displayable

instruct(Painter) - Method in class org.catacomb.dataview.build.DisplayablePoint

instruct(Painter, int) - Method in class org.catacomb.dataview.build.Line

instruct(Painter) - Method in class org.catacomb.dataview.DataPlotPainter

instruct(Painter) - Method in class org.catacomb.dataview.display.Displayable

instruct(Painter) - Method in class org.catacomb.dataview.display.PolyLine

instruct(Painter) - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

instruct(Painter) - Method in class org.catacomb.dataview.formats.MeshSummary

instruct(Painter) - Method in class org.catacomb.dataview.formats.PolyLineHandler

instruct(Painter) - Method in class org.catacomb.dataview.formats.SWCDisplay

instruct(Painter) - Method in class org.catacomb.dataview.formats.TableDataHandler

instruct(Painter) - Method in class org.catacomb.dataview.LinePlotElement

instruct(Painter) - Method in class org.catacomb.dataview.Plot

instruct(Painter) - Method in class org.catacomb.dataview.PlotElement

instruct(Painter) - Method in class org.catacomb.dataview.PointsPlotElement

instruct(Painter) - Method in class org.catacomb.dataview.PolygonPlotElement

instruct(Painter) - Method in class org.catacomb.dataview.RasterRowElement

instruct(Painter) - Method in class org.catacomb.dataview.StringPlotElement

instruct(Painter, Builder) - Method in class org.catacomb.graph.arbor.SegmentGraphPainter

instruct(Painter, Builder) - Method in class org.catacomb.graph.arbor.SegmentGraphVE

instruct(Painter, FixedDrawing, Position, double) - Method in class org.catacomb.graph.drawing.DrawingPainter

instruct(Painter, FixedDrawing, double, double, double) - Method in class org.catacomb.graph.drawing.DrawingPainter

instruct(Painter, double, double, double) - Method in class org.catacomb.graph.drawing.FixedDrawing

instruct(Painter, double, double, double) - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

instruct(Painter, double, double, double) - Method in class org.catacomb.graph.drawing.GenericShape

instruct(Painter, double, double, double) - Method in class org.catacomb.graph.drawing.IconWrapper

instruct(Painter, double, double, double) - Method in class org.catacomb.graph.drawing.Oval

instruct(Painter, double, double, double) - Method in class org.catacomb.graph.drawing.Rectangle

instruct(Painter, double, double, double) - Method in class org.catacomb.graph.drawing.SegmentLine

instruct(Painter, double, double, double) - Method in class org.catacomb.graph.drawing.StraightLine

instruct(Painter, double, double, double) - Method in class org.catacomb.graph.drawing.Triangle

instruct(Painter, Builder) - Method in interface org.catacomb.graph.gui.BuildPaintInstructor

instruct(Painter) - Method in class org.catacomb.graph.gui.CanvasTest

instruct(Painter) - Method in class org.catacomb.graph.gui.Demo1

instruct(Painter) - Method in class org.catacomb.graph.gui.Labellee

instruct(Painter) - Method in class org.catacomb.graph.gui.Labeller

instruct(Painter) - Method in interface org.catacomb.graph.gui.PaintInstructor

instruct(Painter) - Method in class org.catacomb.graph.gui.SpriteMoviePainter

instruct(Painter, Builder) - Method in class org.catacomb.graph.gui.ZoneDemo

instructAreas(Painter) - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

instructBoxes(Painter) - Method in class org.catacomb.dataview.formats.SWCDisplay

instructDensity(Painter) - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

instructFilled(Painter) - Method in class org.catacomb.dataview.formats.SWCDisplay

instructFrame(Painter) - Method in class org.catacomb.dataview.formats.SWCDisplay

instructLines(Painter) - Method in class org.catacomb.dataview.formats.SWCDisplay

instructMesh(Painter) - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

intAction(int) - Method in class org.catacomb.graph.gui.CornerPanel

intAction(int) - Method in interface org.catacomb.interlish.structure.IntActor

intActor - Variable in class org.catacomb.graph.gui.IconButton

intActor - Variable in class org.catacomb.graph.gui.IconRadioButton

IntActor - Interface in org.catacomb.interlish.structure

intbias - Static variable in class org.catacomb.movie.gif.NeuQuant

intbiasshift - Static variable in class org.catacomb.movie.gif.NeuQuant

intDeviceX(double[]) - Method in class org.catacomb.graph.gui.WorldTransform

intDeviceY(double[]) - Method in class org.catacomb.graph.gui.WorldTransform

IntegerArray - Class in org.catacomb.numeric.data

IntegerArray() - Constructor for class org.catacomb.numeric.data.IntegerArray

integerValue - Variable in class org.catacomb.druid.gui.edit.DruInt

IntegerValue - Class in org.catacomb.interlish.content

IntegerValue() - Constructor for class org.catacomb.interlish.content.IntegerValue

IntegerValue(int) - Constructor for class org.catacomb.interlish.content.IntegerValue

IntegerValueEditor - Interface in org.catacomb.interlish.structure

interactive - Static variable in class org.catacomb.graph.gui.DataDisplay

interiorPointConnect(Segment, double, MorphPoint) - Method in class org.textensor.stochdiff.model.EndPoint

InternalTransferHandler - Class in org.catacomb.druid.swing.dnd

InternalTransferHandler() - Constructor for class org.catacomb.druid.swing.dnd.InternalTransferHandler

interp(int, int) - Method in class org.catacomb.interlish.content.ColorTable

interpColorAt(double) - Method in class org.catacomb.interlish.content.ColorTable

interpInAtFor(double[], double[], double[]) - Static method in class org.textensor.util.ArrayUtil

InterpolatingStepGenerator - Class in org.textensor.stochdiff.numeric.stochastic

InterpolatingStepGenerator(BaseCalc.distribution_t) - Constructor for class org.textensor.stochdiff.numeric.stochastic.InterpolatingStepGenerator

interpSG - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

interpSG - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

interpTest() - Static method in class org.textensor.stochdiff.numeric.stochastic.TimeTests

intersectFraction(Position, Position, double[]) - Static method in class org.catacomb.geom.Geom

interTrainInterval - Variable in class org.textensor.stochdiff.model.InjectionStim

intervals - Static variable in class org.catacomb.graph.gui.GridPainter

intervals - Static variable in class org.catacomb.graph.gui.XAxisCanvas

intervals - Static variable in class org.catacomb.graph.gui.YAxisCanvas

intIsDefinitive - Variable in class org.catacomb.graph.drawing.Shape

intIsOnCanvas(int, int) - Method in class org.catacomb.graph.gui.Painter

intIsOnCanvas(int, int) - Method in class org.catacomb.graph.gui.WorldTransform

intlog(int) - Method in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

intlog(int) - Method in class org.textensor.stochdiff.numeric.tmp.Tmp1A

intlogs - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

intlogs - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

intPan(int, int, Point3d) - Method in class org.textensor.vis.SceneGraphViewer

IntPosition - Class in org.catacomb.interlish.content

IntPosition() - Constructor for class org.catacomb.interlish.content.IntPosition

IntPosition(IntPosition) - Constructor for class org.catacomb.interlish.content.IntPosition

IntPosition(int, int) - Constructor for class org.catacomb.interlish.content.IntPosition

inTrash - Variable in class org.catacomb.graph.gui.PickHandler

inTrash(int, int) - Method in class org.catacomb.graph.gui.PickHandler

intRebinFixedAR(int[][], int, int) - Static method in class org.catacomb.datalish.array.Array

intrinsicCurrent - Variable in class org.catacomb.numeric.difnet.model.BasicStateLink

INTRO - Static variable in class org.catacomb.serial.xml.XMLToken

INTRO - Static variable in class org.textensor.xml.XMLToken

intRoll(int, int) - Method in class org.textensor.vis.SceneGraphViewer

IntSlider - Class in org.catacomb.druid.blocks

IntSlider() - Constructor for class org.catacomb.druid.blocks.IntSlider

intval - Variable in class org.catacomb.interlish.content.IntegerValue

invalidateLayout(Container) - Method in class org.catacomb.druid.swing.split.SplitterLayout

Does not have any effect (overridden to null the effect)

inverse() - Method in class org.catacomb.numeric.math.Matrix

inverse() - Method in class org.textensor.stochdiff.numeric.math.Matrix

invert() - Method in class org.catacomb.numeric.math.Matrix

invert() - Method in class org.textensor.stochdiff.numeric.math.Matrix

invokeMethod(String, Object[]) - Method in class org.catacomb.druid.gui.base.DruActionRelay

inxb - Variable in class org.catacomb.movie.gif.ByteAccumulator

inxbuild() - Method in class org.catacomb.movie.gif.NeuQuant

IOK - Static variable in class org.catacomb.numeric.difnet.calc.NetDiffuser

iok - Static variable in class org.catacomb.numeric.difnet.model.BasicNetState

IOPoint - Annotation Type in org.catacomb.interlish.annotation

ioPointConnect(Object, Field, String) - Method in class org.catacomb.druid.build.AnnotationConnector

iout - Variable in class org.catacomb.movie.gif.ByteAccumulator

ipanel - Variable in class org.catacomb.druid.gui.base.DruPseudoCardPanel

ipend - Variable in class org.catacomb.movie.gif.ByteAccumulator

iPivot - Variable in class org.catacomb.druid.util.tree.RelationTree

iq - Static variable in class org.catacomb.serial.xml.XMLTokenizer

iq - Static variable in class org.textensor.xml.XMLTokenizer

iqm - Static variable in class org.catacomb.serial.xml.XMLTokenizer

iqm - Static variable in class org.textensor.xml.XMLTokenizer

iradial - Variable in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

is() - Method in class org.catacomb.interlish.content.BooleanValue

isAble() - Method in class org.catacomb.interlish.content.PrimitiveValue

isActive() - Method in class org.catacomb.druid.swing.DDropCanvas

isActive() - Method in class org.catacomb.graph.gui.MouseHandler

isAcyclic() - Method in class org.catacomb.numeric.difnet.calc.OrderedNetMap

isAfter(TouchTime) - Method in class org.catacomb.interlish.content.BasicTouchTime

isAfter(ChangeTime) - Method in interface org.catacomb.interlish.structure.ChangeTime

isAfter(TouchTime) - Method in interface org.catacomb.interlish.structure.TouchTime

isAntialiasing() - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

isAntialiasing() - Method in class org.catacomb.graph.gui.DrawingCanvas

isAntialiasing() - Method in class org.catacomb.graph.gui.WorldCanvas

isApplet() - Static method in class org.catacomb.interlish.service.Env

isApplication() - Static method in class org.catacomb.interlish.service.Env

isArmed() - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

All these methods simply delegate to the "other" model that is being decorated.

isBall() - Method in class org.textensor.vis.IcingPoint

isBefore(TouchTime) - Method in class org.catacomb.interlish.content.BasicTouchTime

isBefore(ChangeTime) - Method in interface org.catacomb.interlish.structure.ChangeTime

isBefore(TouchTime) - Method in interface org.catacomb.interlish.structure.TouchTime

isBlank(String) - Static method in class org.catacomb.interlish.lang.U

iscale - Variable in class org.catacomb.druid.swing.DFloatSlider

isCalled(String) - Method in class org.catacomb.interlish.content.NVPair

isChecked() - Method in class org.catacomb.druid.swing.DCheckbox

isClose() - Method in class org.catacomb.serial.xml.XMLToken

isClose() - Method in class org.textensor.xml.XMLToken

isClosed() - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

isClosed() - Method in class org.catacomb.interlish.content.Polypoint

isColored3d() - Method in class org.textensor.vis.IcingPoint

isComment() - Method in class org.catacomb.serial.xml.XMLToken

isComment() - Method in class org.textensor.xml.XMLToken

isContinuation() - Method in class org.textensor.stochdiff.ResultWriter

isCuboid() - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

isCurved() - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

isDataFlavorSupported(DataFlavor) - Method in class org.catacomb.druid.swing.dnd.DdndTransferable

isDescendant(TreePath, TreePath) - Method in class org.catacomb.druid.swing.CheckTreeSelectionModel

isDown() - Method in class org.catacomb.graph.gui.Mouse

isEnabled() - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

isEndPoint() - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

isError() - Method in class org.catacomb.numeric.difnet.model.BasicNetState

isError() - Method in interface org.catacomb.numeric.difnet.NetState

isEventSequence() - Method in class org.catacomb.graph.gui.DataView

isExpanded() - Method in class org.catacomb.druid.xtext.data.XType

isExtensible() - Method in class org.catacomb.graph.drawing.Shape

isExternal() - Method in interface org.catacomb.interlish.structure.Socket

isFilled() - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

isFilled() - Method in class org.catacomb.interlish.content.Polypoint

isFinished() - Method in class org.catacomb.be.TimePoint

isFinished() - Method in interface org.catacomb.interlish.structure.StateProcess

isFree() - Method in interface org.catacomb.interlish.structure.Plug

isFree() - Method in class org.catacomb.numeric.difnet.calc.NetMapNode

isFree() - Method in class org.catacomb.serial.quickxml.Element

isFullyAngular() - Method in class org.catacomb.graph.drawing.Shape

isFullyRounded() - Method in class org.catacomb.graph.drawing.Shape

isHighlighted() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

isIn() - Method in class org.catacomb.graph.gui.MouseHandler

isInput() - Method in interface org.catacomb.interlish.structure.Socket

isIntro() - Method in class org.catacomb.serial.xml.XMLToken

isIntro() - Method in class org.textensor.xml.XMLToken

isLeaf() - Method in class org.catacomb.druid.gui.base.DummyTree

isLeaf(Object) - Method in class org.catacomb.druid.swing.DTreeModel

isLeaf() - Method in class org.catacomb.druid.swing.EmptyTree

isLeaf() - Method in class org.catacomb.druid.util.examples.DemoNode

isLeaf() - Method in class org.catacomb.druid.util.tree.ArrayListNode

isLeaf() - Method in class org.catacomb.druid.xtext.base.DocStore

isLeaf() - Method in class org.catacomb.druid.xtext.base.XTDoc

isLeaf() - Method in interface org.catacomb.interlish.structure.TreeNode

isLeaf() - Method in class org.catacomb.numeric.data.BlockStack

isLeaf() - Method in class org.catacomb.numeric.data.DVector

isLeaf() - Method in class org.catacomb.numeric.data.NumDataStore

isLeaf() - Method in class org.catacomb.numeric.data.StackMultipleSlice

isLeaf() - Method in class org.catacomb.numeric.data.StackSingleSlice

isLeaf() - Method in class org.catacomb.util.StringTree

isLeaf() - Method in class org.catacomb.util.StringTreeLeaf

islider - Variable in class org.catacomb.druid.swing.DSlider

isLog() - Method in class org.catacomb.druid.swing.DFloatSlider

isMarked() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

isMarked() - Method in class org.catacomb.numeric.data.DataItem

isMetaName(String) - Static method in class org.catacomb.serial.jar.CustomJar

isMinor() - Method in class org.textensor.vis.IcingPoint

isMovie() - Method in class org.catacomb.graph.gui.DataView

isNone() - Method in class org.catacomb.serial.xml.XMLToken

isNone() - Method in class org.textensor.xml.XMLToken

isNumber() - Method in class org.catacomb.serial.xml.XMLToken

isNumber() - Method in class org.textensor.xml.XMLToken

isOK() - Method in class org.catacomb.interlish.reflect.ReflectionWrapper

isOn() - Method in class org.catacomb.druid.swing.ToggleItem

isOnCanvas(Position) - Method in class org.catacomb.graph.gui.Painter

isOnCanvas(double, double) - Method in class org.catacomb.graph.gui.Painter

isOnCanvas(double, double) - Method in class org.catacomb.graph.gui.WorldTransform

isOpen() - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

isOpen() - Method in class org.catacomb.interlish.content.Polypoint

isOpen() - Method in class org.catacomb.serial.xml.XMLToken

isOpen() - Method in class org.textensor.xml.XMLToken

isOut() - Method in class org.catacomb.graph.gui.MouseHandler

isOutput() - Method in interface org.catacomb.interlish.structure.Socket

isPartiallySelected(TreePath) - Method in class org.catacomb.druid.swing.CheckTreeSelectionModel

isPathSelected(TreePath, boolean) - Method in class org.catacomb.druid.swing.CheckTreeSelectionModel

isPaused - Variable in class org.catacomb.dataview.FrameController

isPaused - Variable in class org.catacomb.dataview.gui.FramePlayerController

isPaused - Variable in class org.catacomb.graph.gui.MovieDisplay

ispecout - Variable in class org.textensor.stochdiff.numeric.BaseCalc

isPotential() - Method in interface org.catacomb.numeric.difnet.DiffusibleQuantity

isPressed() - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

isPublic() - Method in class org.catacomb.act.FieldSignature

isQuadrilateral() - Method in class org.catacomb.graph.drawing.Shape

isReal() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

isRectangleSymmetry() - Method in class org.catacomb.graph.drawing.Shape

isRectangular() - Method in class org.catacomb.graph.drawing.Shape

isRequiredUser() - Method in class org.catacomb.act.MethodSignature

isRollover() - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

isSelected() - Method in class org.catacomb.druid.gui.edit.DruCheckbox

isSelected() - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

isSelected() - Method in interface org.catacomb.interlish.structure.Toggle

isSelectionEmpty() - Method in class org.catacomb.druid.gui.edit.DruListPanel

isShowing() - Method in class org.catacomb.druid.build.Druid

isShowing() - Method in class org.catacomb.druid.dialog.DialogController

isShowing() - Method in class org.catacomb.druid.gui.base.DruAutonomousDialog

isShowing() - Method in class org.catacomb.druid.gui.base.DruDialog

isShowing(double, double) - Method in class org.catacomb.graph.gui.Painter

isShowing(double, double) - Method in class org.catacomb.graph.gui.WorldTransform

isShowing() - Method in interface org.catacomb.interlish.structure.Dialog

isSpecie() - Method in interface org.catacomb.numeric.difnet.DiffusibleQuantity

isSquareSymmetry() - Method in class org.catacomb.graph.drawing.Shape

isString() - Method in class org.catacomb.serial.xml.XMLToken

isString() - Method in class org.textensor.xml.XMLToken

isSubmembrane() - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

isSuper() - Method in class org.catacomb.act.MethodSignature

isSymmetric() - Method in class org.catacomb.graph.drawing.Shape

isSystem() - Method in class org.catacomb.act.MethodSignature

istat - Static variable in class org.catacomb.numeric.difnet.model.BasicNetState

istep - Variable in class org.catacomb.be.TimePoint

isText() - Method in class org.catacomb.druid.xtext.base.TextBlock

isType(String) - Method in class org.catacomb.graph.drawing.ShapePoint

isUndecided() - Method in class org.catacomb.graph.gui.MouseHandler

isUnique() - Method in class org.catacomb.druid.build.GUIPath

isUser() - Method in class org.catacomb.act.MethodSignature

isUserAccessible() - Method in class org.catacomb.act.MethodSignature

isValid() - Method in class org.catacomb.be.Position

isVisible() - Method in class org.catacomb.act.FieldSignature

isWrapper() - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

isWrapper() - Method in class org.catacomb.graph.drawing.IconWrapper

isXY() - Method in class org.catacomb.graph.gui.DataView

item - Variable in class org.catacomb.druid.market.ConsumerAgent

item - Variable in class org.catacomb.numeric.data.DataSlice

itemClaims(Pickable, int, int, double, double) - Method in class org.catacomb.graph.gui.PickStore

itemClass - Variable in class org.catacomb.interlish.content.KeyedList

itemClass - Variable in class org.catacomb.interlish.content.KeyedMultiList

itemDependents - Variable in class org.catacomb.druid.market.SupplyClerk

itemHM - Variable in class org.catacomb.dataview.read.CustomJarReader

itemHM - Variable in class org.catacomb.druid.xtext.data.PageDataStore

itemHM - Variable in class org.catacomb.interlish.content.KeyedList

itemHM - Variable in class org.catacomb.numeric.data.NumDataSet

itemHM - Variable in class org.catacomb.serial.jar.CustomJarWriter

itemLogged(InfoLog) - Method in class org.catacomb.druid.gui.edit.DruLogPanel

itemLogged(InfoLog) - Method in interface org.catacomb.interlish.structure.LogNotificand

ItemNames - Annotation Type in org.catacomb.numeric.data

itemPath - Variable in class org.catacomb.graph.gui.DataView

items - Variable in class org.catacomb.dataview.DataPlotPainter

items - Variable in class org.catacomb.druid.blocks.Menu

items - Variable in class org.catacomb.druid.gui.edit.DruListPanel

items - Variable in class org.catacomb.druid.gui.edit.DruMenu

items - Variable in class org.catacomb.druid.xtext.base.ContainerBlock

items - Variable in class org.catacomb.graph.drawing.FixedDrawing

items - Variable in class org.catacomb.interlish.content.KeyedList

items - Variable in class org.catacomb.interlish.content.KeyedMultiList

items - Variable in class org.catacomb.interlish.content.QuantifiedListValue

items - Variable in class org.catacomb.interlish.content.QuantityList

items - Variable in class org.catacomb.interlish.content.Stack

items - Variable in class org.catacomb.numeric.data.BlockStack

items - Variable in class org.catacomb.numeric.data.DataSetArray

items - Variable in class org.catacomb.numeric.data.IntegerArray

items - Variable in class org.textensor.stochdiff.neuroml.meta

itemSelected(String) - Method in class org.catacomb.graph.gui.GraphContextMenu

itemStateChanged(ItemEvent) - Method in class org.catacomb.druid.swing.DRadioButton

iti - Static variable in class org.catacomb.druid.xtext.base.DocStore

itv - Variable in class org.catacomb.numeric.function.HoldLastScalarFunction

itxt - Variable in class org.catacomb.druid.xtext.canvas.DataBoard

itxt - Variable in class org.catacomb.druid.xtext.canvas.TextBoard

iwork - Variable in class org.catacomb.numeric.difnet.CellPoint

iwork - Variable in class org.catacomb.numeric.difnet.model.BasicStructureNode

iwork - Variable in class org.catacomb.numeric.mesh.DifMeshPoint

iwork - Variable in class org.textensor.stochdiff.numeric.morph.TreePoint

ize(Object) - Method in interface org.catacomb.interlish.structure.Izer

Izer - Interface in org.catacomb.interlish.structure

J

jarImportContext - Variable in class org.catacomb.dataview.read.CustomJarReader

JarImportContext - Class in org.catacomb.dataview.read

JarImportContext(FUImportContext) - Constructor for class org.catacomb.dataview.read.JarImportContext

jcenter - Variable in class org.textensor.stochdiff.numeric.morph.VolumeSlice

jcomponent - Variable in class org.catacomb.druid.swing.DSplitPaneUI

jpl - Variable in class org.catacomb.druid.swing.DListColorRenderer

jran - Static variable in class org.catacomb.numeric.math.Random

jran - Static variable in class org.textensor.stochdiff.numeric.math.NRRandom

jsp - Variable in class org.catacomb.druid.swing.DTextArea

jsp - Variable in class org.catacomb.graph.gui.LeftRightSplitPanel

jSplitPane - Variable in class org.catacomb.graph.gui.AboveBelowSplitPanel

jta - Variable in class org.catacomb.druid.swing.DTextArea

jTextField - Variable in class org.catacomb.druid.swing.DTextField

jtField - Variable in class org.catacomb.druid.swing.dnd.TextFieldDropTarget

jTree - Variable in class org.catacomb.druid.swing.DTreePanel

jtxt - Variable in class org.catacomb.druid.xtext.canvas.DataBoard

jtxt - Variable in class org.catacomb.druid.xtext.canvas.TextBoard

jumpToFrame(int) - Method in class org.catacomb.druid.chunk.MoviePlayController

justLoaded - Variable in class org.catacomb.interlish.content.DocumentedComponent

justLoaded() - Method in class org.catacomb.interlish.content.DocumentedComponent

JUtil - Class in org.catacomb.interlish.util

JUtil() - Constructor for class org.catacomb.interlish.util.JUtil

K

kdiff - Variable in class org.textensor.stochdiff.model.Specie

kdiffunit - Variable in class org.textensor.stochdiff.model.Specie

keepFont - Variable in class org.catacomb.druid.swing.DTextArea

keyCache - Variable in class org.catacomb.interlish.content.KeyedList

keyCode - Variable in class org.catacomb.druid.swing.DDropCanvas

keyCode - Variable in class org.catacomb.druid.xtext.canvas.KeyWriter

KeyedList<V> - Class in org.catacomb.interlish.content

KeyedList() - Constructor for class org.catacomb.interlish.content.KeyedList

KeyedList(String) - Constructor for class org.catacomb.interlish.content.KeyedList

KeyedList(Class) - Constructor for class org.catacomb.interlish.content.KeyedList

KeyedList(ArrayList<V>) - Constructor for class org.catacomb.interlish.content.KeyedList

KeyedMultiList<V> - Class in org.catacomb.interlish.content

KeyedMultiList() - Constructor for class org.catacomb.interlish.content.KeyedMultiList

KeyedMultiList(Class) - Constructor for class org.catacomb.interlish.content.KeyedMultiList

KeyedMultiList(String) - Constructor for class org.catacomb.interlish.content.KeyedMultiList

keyPressed(KeyEvent) - Method in class org.catacomb.druid.swing.DDropCanvas

keyPressed(KeyEvent) - Method in class org.catacomb.druid.swing.DTextField

keyPressed(KeyEvent) - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

keyReleased(KeyEvent) - Method in class org.catacomb.druid.swing.DDropCanvas

keyReleased(KeyEvent) - Method in class org.catacomb.druid.swing.DTextField

keyReleased(KeyEvent) - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

keyTyped(KeyEvent) - Method in class org.catacomb.druid.swing.DDropCanvas

keyTyped(KeyEvent) - Method in class org.catacomb.druid.swing.DTextField

keyTyped(KeyEvent) - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

KeyWriter - Class in org.catacomb.druid.xtext.canvas

KeyWriter(TextBoard) - Constructor for class org.catacomb.druid.xtext.canvas.KeyWriter

keyWriter - Variable in class org.catacomb.druid.xtext.canvas.TextBoard

KitPanel - Class in org.catacomb.druid.blocks

KitPanel() - Constructor for class org.catacomb.druid.blocks.KitPanel

L

label - Variable in class org.catacomb.dataview.build.Axis

label - Variable in class org.catacomb.dataview.build.Displayable

label - Variable in class org.catacomb.dataview.display.Displayable

label - Variable in class org.catacomb.dataview.model.AxisLayout

label - Variable in class org.catacomb.dataview.model.Plottable

label - Variable in class org.catacomb.dataview.PlotElement

label - Variable in class org.catacomb.druid.blocks.AbstractButton

label - Variable in class org.catacomb.druid.blocks.Checkbox

label - Variable in class org.catacomb.druid.blocks.CheckboxMenuItem

label - Variable in class org.catacomb.druid.blocks.Choice

label - Variable in class org.catacomb.druid.blocks.ColorChoice

label - Variable in class org.catacomb.druid.blocks.FloatSlider

label - Variable in class org.catacomb.druid.blocks.IntSlider

Label - Class in org.catacomb.druid.blocks

Label() - Constructor for class org.catacomb.druid.blocks.Label

label - Variable in class org.catacomb.druid.blocks.LabelledTextField

label - Variable in class org.catacomb.druid.blocks.LoggedButton

label - Variable in class org.catacomb.druid.blocks.Menu

label - Variable in class org.catacomb.druid.blocks.MenuItem

label - Variable in class org.catacomb.druid.blocks.Option

label - Variable in class org.catacomb.druid.blocks.RadioButtons

label - Variable in class org.catacomb.druid.blocks.SimpleSlider

label - Variable in class org.catacomb.druid.blocks.Slider

label - Variable in class org.catacomb.druid.blocks.TextField

label - Variable in class org.catacomb.druid.gui.base.DruStatusBar

label - Variable in class org.catacomb.druid.gui.edit.DruButton

label - Variable in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

label - Variable in class org.catacomb.druid.gui.edit.DruColorChoice

label - Variable in class org.catacomb.druid.gui.edit.DruMenuItem

label - Variable in class org.catacomb.druid.swing.CheckListCellRenderer

label - Variable in class org.catacomb.druid.swing.DBaseButton

label - Variable in class org.catacomb.druid.swing.DCheckbox

label - Variable in class org.catacomb.druid.swing.DFloatSlider

label - Variable in class org.catacomb.druid.swing.DInfoArea

label - Variable in class org.catacomb.graph.arbor.SegmentGraphPoint

label - Variable in class org.catacomb.graph.gui.Labellee

label - Variable in class org.catacomb.graph.gui.PickableRegion

label - Variable in class org.catacomb.interlish.content.DocumentedComponent

label - Static variable in class org.catacomb.interlish.interact.Clipboard

label - Variable in class org.catacomb.numeric.data.DDSubSlice

label - Variable in class org.catacomb.util.StringTree

label - Variable in class org.catacomb.util.StringTreeLeaf

label - Variable in class org.textensor.stochdiff.model.MorphPoint

label - Variable in class org.textensor.stochdiff.model.Section

label - Variable in class org.textensor.stochdiff.numeric.morph.TreePoint

label - Variable in class org.textensor.stochdiff.numeric.morph.VolumeElement

label - Variable in class org.textensor.vis.IcingPoint

Labelable - Interface in org.catacomb.interlish.structure

labelAction(String, boolean) - Method in interface org.catacomb.druid.event.LabelActor

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.base.DruBrowserPanel

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.base.DruScratchPanel

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.base.DruScrollableTextPanel

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.base.DruTextPanel

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruButton

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruCheckbox

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruChoice

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruColorChoice

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruDropBox

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruFillGuage

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruFloat

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruInt

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruLabelledTextField

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruListPanel

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruLoggedButton

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruMenu

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruMenuButton

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruMenuItem

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruRadioButtons

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruSimpleSlider

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruSlider

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruToggleButton

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruToggleListPanel

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

labelAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.ExpandingTextAreaController

labelAction(String, boolean) - Method in class org.catacomb.druid.swing.DChoice

labelAction(String, boolean) - Method in class org.catacomb.druid.swing.DFloat

labelAction(String, boolean) - Method in class org.catacomb.druid.swing.DInt

labelAction(String, boolean) - Method in class org.catacomb.druid.swing.DMenuItem

labelAction(String, boolean) - Method in class org.catacomb.druid.swing.DPlainTextEditor

labelAction(String, boolean) - Method in class org.catacomb.druid.swing.DPopLabel

labelAction(String, boolean) - Method in class org.catacomb.druid.swing.DValueHistory

LabelActor - Interface in org.catacomb.druid.event

labelActor - Variable in class org.catacomb.druid.gui.edit.DruColorChoice

labelActor - Variable in class org.catacomb.druid.gui.edit.DruFloat

labelActor - Variable in class org.catacomb.druid.gui.edit.DruInt

labelActor - Variable in class org.catacomb.druid.swing.DCheckboxList

labelActor - Variable in class org.catacomb.druid.swing.DDropCanvas

labelActor - Variable in class org.catacomb.druid.swing.DFloat

labelActor - Variable in class org.catacomb.druid.swing.DFloatSlider

labelActor - Variable in class org.catacomb.druid.swing.DInt

labelActor - Variable in class org.catacomb.druid.swing.DList

labelActor - Variable in class org.catacomb.druid.swing.DSimpleSlider

labelActor - Variable in class org.catacomb.druid.swing.DSlider

labelActor - Variable in class org.catacomb.druid.swing.DTextField

labelAxes(String, String) - Method in class org.catacomb.dataview.AxisPainter

labelFont - Variable in class org.catacomb.druid.swing.DRadioButtons

Labelled - Interface in org.catacomb.interlish.structure

LabelledTextField - Class in org.catacomb.druid.blocks

LabelledTextField() - Constructor for class org.catacomb.druid.blocks.LabelledTextField

LabelledTextField(String) - Constructor for class org.catacomb.druid.blocks.LabelledTextField

labellee - Variable in class org.catacomb.dataview.build.Line

Labellee - Class in org.catacomb.graph.gui

Labellee(double[], double[], String, Color) - Constructor for class org.catacomb.graph.gui.Labellee

labellees - Variable in class org.catacomb.graph.gui.Labeller

labeller - Variable in class org.catacomb.dataview.DataPlotPainter

Labeller - Class in org.catacomb.graph.gui

Labeller(int) - Constructor for class org.catacomb.graph.gui.Labeller

labels - Variable in class org.catacomb.druid.blocks.Choice

labels - Variable in class org.catacomb.druid.blocks.RadioButtons

labels - Variable in class org.catacomb.druid.swing.DChoice

labels - Variable in class org.catacomb.druid.swing.DRadioButtons

labels - Variable in class org.textensor.stochdiff.disc.DiscretizedSpine

labels - Variable in class org.textensor.stochdiff.numeric.morph.SpineProfile

labelsBV - Variable in class org.catacomb.druid.chunk.MouseModeController

lableActor - Variable in class org.catacomb.druid.swing.DTextArea

labX - Variable in class org.catacomb.graph.gui.XAxisCanvas

labY - Variable in class org.catacomb.graph.gui.YAxisCanvas

lact - Variable in class org.catacomb.druid.swing.DBaseButton

lact - Variable in class org.catacomb.druid.swing.DCheckbox

lact - Variable in class org.catacomb.druid.swing.DChoice

lact - Variable in class org.catacomb.druid.swing.DComboBox

lact - Variable in class org.catacomb.druid.swing.DImageButton

lact - Variable in class org.catacomb.druid.swing.DPlainTextEditor

lact - Variable in class org.catacomb.druid.swing.DRadioButtons

lact - Variable in class org.catacomb.druid.swing.DValueHistory

lactor - Variable in class org.catacomb.druid.swing.DMenuItem

LAF - Class in org.catacomb.druid.swing

LAF() - Constructor for class org.catacomb.druid.swing.LAF

largestNeighborNot(TreePoint) - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

last0 - Variable in class org.catacomb.util.DiffPrint.Base

last1 - Variable in class org.catacomb.util.DiffPrint.Base

lastCapitalized(String) - Static method in class org.catacomb.util.StringUtil

lastErr - Static variable in class org.catacomb.report.E

lastErr - Static variable in class org.textensor.report.E

lastH - Variable in class org.catacomb.druid.swing.split.SplitterLayout

lastPainted - Variable in class org.catacomb.graph.gui.SpriteMoviePainter

lastPathSegment(String) - Static method in class org.catacomb.util.PathUtil

lastPickInfos - Variable in class org.textensor.vis.SceneGraphViewer

lastSelection - Variable in class org.catacomb.druid.gui.edit.DruTreePanel

lastShortSource - Static variable in class org.catacomb.report.E

lastShortSource - Static variable in class org.textensor.report.E

lastSupplied - Variable in class org.catacomb.druid.market.SupplyClerk

lastText - Variable in class org.catacomb.druid.gui.base.DruInfoPanel

lastTitle - Variable in class org.catacomb.druid.gui.base.DruInfoPanel

lastW - Variable in class org.catacomb.druid.swing.split.SplitterLayout

laterThan(ChangeEvent) - Method in class org.catacomb.be.ChangeEvent

latestAddition() - Method in class org.catacomb.graph.gui.ViewSet

latestChoice - Variable in class org.catacomb.druid.swing.DPopLabel

latestNew - Variable in class org.catacomb.graph.gui.ViewSet

layout - Variable in class org.catacomb.dataview.build.CompoundView

layout - Variable in class org.catacomb.dataview.build.Dataview

layout - Variable in class org.catacomb.druid.blocks.RadioButtons

layoutContainer(Container) - Method in class org.catacomb.druid.swing.split.SplitterLayout

leafIcon - Static variable in class org.catacomb.druid.swing.TCRenderer

learn() - Method in class org.catacomb.movie.gif.NeuQuant

LEFT - Static variable in class org.catacomb.druid.gui.base.DruFlowPanel

LEFT - Static variable in class org.catacomb.graph.gui.Mouse

LEFT - Static variable in class org.catacomb.util.MouseUtil

LEFT - Static variable in class org.textensor.vis.SceneGraphViewer

leftButton() - Method in class org.catacomb.graph.gui.Mouse

LeftFlowPanel - Class in org.catacomb.druid.blocks

LeftFlowPanel() - Constructor for class org.catacomb.druid.blocks.LeftFlowPanel

leftMargin - Variable in class org.catacomb.dataview.GraphMaker

leftMargin - Variable in class org.catacomb.graph.gui.WorldTransform

LeftRightSplitPanel - Class in org.catacomb.druid.blocks

LeftRightSplitPanel() - Constructor for class org.catacomb.druid.blocks.LeftRightSplitPanel

LeftRightSplitPanel - Class in org.catacomb.graph.gui

LeftRightSplitPanel(AboveBelowSplitPanel, AboveBelowSplitPanel, GraphColors) - Constructor for class org.catacomb.graph.gui.LeftRightSplitPanel

LeftRightSplitPanelUI - Class in org.catacomb.graph.gui

LeftRightSplitPanelUI(AboveBelowSplitPanel, GraphColors) - Constructor for class org.catacomb.graph.gui.LeftRightSplitPanelUI

legalize(String) - Method in class org.catacomb.xdoc.TextTagger

legalizers - Static variable in class org.catacomb.xdoc.TextTagger

length() - Method in class org.catacomb.numeric.data.DataSetArray

length() - Method in class org.catacomb.numeric.data.FloatVector

length(Vector) - Static method in class org.textensor.stochdiff.geom.Geom

length_units - Variable in class org.textensor.stochdiff.neuroml.morphml

lengthcount - Variable in class org.catacomb.movie.gif.NeuQuant

lengthDensity - Variable in class org.textensor.stochdiff.model.SpineAllocation

lengthUnits - Variable in class org.textensor.stochdiff.neuroml.morphml

lens - Variable in class org.textensor.vis.VolElt

levels - Static variable in class org.catacomb.report.E

LIGHTGRAY - Static variable in class org.catacomb.numeric.phys.Phys

lights - Variable in class org.textensor.vis.SceneGraphViewer

lightSkyBlue3 - Static variable in class org.catacomb.druid.swing.split.Colors

limitBox - Variable in class org.catacomb.dataview.DataPlotPainter

limitNumber(String, int) - Method in class org.catacomb.serial.quickxml.Element

LIN - Static variable in class org.catacomb.druid.swing.DFloat

LIN - Static variable in class org.catacomb.druid.swing.DInt

Line - Class in org.catacomb.dataview.build

Line() - Constructor for class org.catacomb.dataview.build.Line

Line - Class in org.catacomb.dataview.model

Line() - Constructor for class org.catacomb.dataview.model.Line

line0 - Variable in class org.catacomb.util.Diff.change

Line number of 1st deleted line.

line1 - Variable in class org.catacomb.util.Diff.change

Line number of 1st inserted line.

lineArray(String, boolean) - Static method in class org.catacomb.util.DiffStrings

LineBlock - Interface in org.catacomb.interlish.structure

lineborder - Variable in class org.catacomb.druid.swing.DPanel

LineBoxer - Class in org.textensor.stochdiff.disc

LineBoxer(TreePoint[], double[], double) - Constructor for class org.textensor.stochdiff.disc.LineBoxer

lineColor - Variable in class org.catacomb.datalish.SpritePart

lineColor - Variable in class org.catacomb.graph.drawing.FixedDrawingComponent

lineColor - Variable in class org.catacomb.graph.drawing.Shape

lineColor - Variable in class org.catacomb.graph.gui.DisplayStyleSet

lineColor - Variable in class org.catacomb.graph.gui.SimpleVectorSprite

lineColor - Variable in class org.catacomb.interlish.content.RShape

lineColor - Variable in class org.catacomb.numeric.data.XYVectorSprite

lineFill(Position, Position, String, String) - Method in class org.textensor.stochdiff.numeric.morph.VolumeLine

LineGraph - Class in org.catacomb.dataview.model

LineGraph() - Constructor for class org.catacomb.dataview.model.LineGraph

lineno() - Method in class org.catacomb.serial.xml.XMLTokenizer

lineno() - Method in class org.textensor.xml.XMLTokenizer

LinePlotElement - Class in org.catacomb.dataview

LinePlotElement(double[], double[]) - Constructor for class org.catacomb.dataview.LinePlotElement

LinePlotElement(double[], double[], Color) - Constructor for class org.catacomb.dataview.LinePlotElement

LinePlotElement(double[], double[], Color, String) - Constructor for class org.catacomb.dataview.LinePlotElement

lines - Variable in class org.catacomb.dataview.model.LineGraph

LineSet - Class in org.catacomb.dataview.model

LineSet() - Constructor for class org.catacomb.dataview.model.LineSet

lineSets - Variable in class org.catacomb.dataview.model.LineGraph

lineStyle - Variable in class org.catacomb.graph.gui.DisplayStyleSet

lineStyleCounter - Static variable in class org.catacomb.graph.gui.DisplayStyleSet

lineWidth - Variable in class org.catacomb.datalish.SpritePart

lineWidth - Variable in class org.catacomb.graph.drawing.FixedDrawingComponent

lineWidth - Variable in class org.catacomb.graph.drawing.Shape

lineWidth - Variable in class org.catacomb.graph.gui.DisplayStyleSet

lineWidth - Variable in class org.catacomb.interlish.content.RShape

lineWidthIndex - Variable in class org.catacomb.graph.gui.DisplayStyleSet

link() - Method in class org.catacomb.druid.xtext.base.ContainerBlock

link - Variable in class org.catacomb.numeric.difnet.calc.OrderedNetMap

link - Variable in class org.catacomb.util.Diff.change

Previous or next edit command.

linkAction - Variable in class org.catacomb.druid.blocks.HTMLPanel

linkee - Variable in class org.catacomb.druid.xtext.base.WordBlock

LinkHandler - Interface in org.catacomb.interlish.structure

linkize(String) - Method in class org.catacomb.xdoc.TextTagger

linkizers - Static variable in class org.catacomb.xdoc.TextTagger

links - Variable in class org.catacomb.numeric.difnet.model.BasicNetState

links - Variable in class org.catacomb.numeric.difnet.model.BasicNetStructure

linkToWarning(String, Object) - Static method in class org.catacomb.report.E

linkToWarning(String, Object) - Static method in class org.textensor.report.E

linmax - Variable in class org.catacomb.druid.swing.DFloatSlider

linmin - Variable in class org.catacomb.druid.swing.DFloatSlider

linMod(Color, int) - Static method in class org.catacomb.druid.swing.RolloverEffect

linMod(Color, int) - Static method in class org.catacomb.graph.gui.RolloverEffect

linMod(Color, int) - Static method in class org.catacomb.util.ColorUtil

linvalue - Variable in class org.catacomb.druid.swing.DFloatSlider

linvaluedown - Variable in class org.catacomb.druid.swing.DFloatSlider

List - Class in org.catacomb.druid.blocks

List() - Constructor for class org.catacomb.druid.blocks.List

List - Interface in org.catacomb.interlish.structure

listChanged(Object) - Method in class org.catacomb.druid.gui.edit.DruListPanel

listChanged(Object) - Method in interface org.catacomb.interlish.structure.ListWatcher

ListClickArea - Class in org.catacomb.druid.blocks

ListClickArea() - Constructor for class org.catacomb.druid.blocks.ListClickArea

ListDisplay - Interface in org.catacomb.druid.util

listeners - Variable in class org.catacomb.druid.gui.base.DruPseudoCardPanel

listHM - Variable in class org.catacomb.interlish.content.KeyedMultiList

listItemPrefix - Static variable in class org.catacomb.xdoc.TextTagger

listize(String) - Method in class org.catacomb.xdoc.TextTagger

listResources(String) - Static method in class org.catacomb.util.FileLister

listResources(File) - Static method in class org.catacomb.util.FileLister

listSize() - Method in class org.catacomb.druid.gui.edit.DruListPanel

listSize() - Method in class org.catacomb.druid.swing.DList

listWatcher - Variable in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

listWatcher - Variable in class org.catacomb.druid.gui.edit.DruToggleListPanel

ListWatcher - Interface in org.catacomb.interlish.structure

listWatchers - Variable in class org.catacomb.interlish.content.KeyedList

liveBgColor - Variable in class org.catacomb.druid.swing.DDropCanvas

LN_PARTICLES_PUVC - Static variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

LN_PARTICLES_PUVC - Static variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

lnCC - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

lnCC - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

lndt - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

lndt - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

lnfdiff - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

lnfdiff - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

lnp - Variable in class org.textensor.stochdiff.numeric.stochastic.FixedPStepGenerator

lnp - Variable in class org.textensor.stochdiff.numeric.stochastic.NGoTable

lnpmax - Variable in class org.textensor.stochdiff.numeric.stochastic.InterpolatingStepGenerator

lnpmin - Static variable in class org.textensor.stochdiff.numeric.stochastic.DiscretePStepGenerator

lnpmin - Variable in class org.textensor.stochdiff.numeric.stochastic.InterpolatingStepGenerator

lnpSharedOut - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

lnpSharedOut - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

lnrates - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

lnrates - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

lnvolumes - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

lnvolumes - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

loadDefault() - Method in class org.catacomb.xdoc.HTMLPage

loadElements(File) - Method in class org.textensor.vis.CCViz3D

loadElements(ArrayList<VolElt>) - Method in class org.textensor.vis.SceneGraphBuilder

loadFile(File) - Method in class org.catacomb.druid.build.ReceivingController

loadFile(File) - Method in class org.catacomb.graph.drawing.IconEditorController

loadFile(File) - Method in interface org.catacomb.interlish.structure.SaverLoader

loadFromFileNoCache(File) - Method in class org.catacomb.druid.load.DruidContentLoader

loadObject(DecFile) - Method in class org.catacomb.druid.load.DruidContentLoader

loadRelStyleSheet(Object, String) - Method in class org.catacomb.druid.swing.DHTMLPane

loadText(DecFile) - Method in class org.catacomb.druid.load.DruidContentLoader

loadText(String) - Method in class org.catacomb.xdoc.HTMLPage

loadToObject(DecFile) - Method in class org.catacomb.druid.load.DruidContentLoader

locale - Variable in class org.textensor.vis.SceneGraphViewer

locallyFixed - Variable in class org.catacomb.numeric.difnet.calc.NetMapNode

localSetBorder(Border) - Method in class org.catacomb.druid.swing.DPanel

locateBetween(CellPoint, CellPoint, double) - Method in class org.catacomb.numeric.difnet.CellPoint

locateBetween(MeshPoint, MeshPoint, double, MeshPoint) - Static method in class org.catacomb.numeric.mesh.Discretizer

locateBetween(TreePoint, TreePoint, double) - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

log(String) - Method in class org.catacomb.druid.dialog.ProgressLogDialogController

log(Message) - Method in class org.catacomb.druid.dialog.ProgressLogDialogController

Log - Class in org.catacomb.druid.guimodel

Log(String) - Constructor for class org.catacomb.druid.guimodel.Log

LOG - Static variable in class org.catacomb.druid.swing.DFloat

LOG - Static variable in class org.catacomb.druid.swing.DInt

log(String) - Static method in class org.catacomb.interlish.report.LogFallback

log(String) - Method in interface org.catacomb.interlish.report.Logger

log(Message) - Method in interface org.catacomb.interlish.report.Logger

log(String) - Method in class org.catacomb.interlish.report.PrintLogger

log(Message) - Method in class org.catacomb.interlish.report.PrintLogger

log - Static variable in class org.catacomb.interlish.report.UserLog

log(double[], double) - Static method in class org.textensor.util.ArrayUtil

log(double[][], double) - Static method in class org.textensor.util.ArrayUtil

LogBoard - Class in org.catacomb.druid.market

LogBoard() - Constructor for class org.catacomb.druid.market.LogBoard

logChange() - Method in class org.catacomb.interlish.content.PrimitiveValue

LogDisplay - Interface in org.catacomb.interlish.structure

LogEntry - Class in org.catacomb.druid.guimodel

LogEntry(String) - Constructor for class org.catacomb.druid.guimodel.LogEntry

LogEntry(int, String) - Constructor for class org.catacomb.druid.guimodel.LogEntry

LogEntry(int, String, String) - Constructor for class org.catacomb.druid.guimodel.LogEntry

logEntryTemplate - Variable in class org.catacomb.druid.guimodel.LogEntry

LogFallback - Class in org.catacomb.interlish.report

LogFallback() - Constructor for class org.catacomb.interlish.report.LogFallback

LoggedButton - Class in org.catacomb.druid.blocks

LoggedButton() - Constructor for class org.catacomb.druid.blocks.LoggedButton

LoggedButton(String) - Constructor for class org.catacomb.druid.blocks.LoggedButton

logger - Variable in class org.catacomb.druid.load.DruidAppBase

logger - Variable in class org.catacomb.graph.gui.MovieDisplay.MDThreadRunner

Logger - Interface in org.catacomb.interlish.report

logging - Variable in class org.catacomb.druid.blocks.Application

logHTMLTemplate - Variable in class org.catacomb.druid.gui.edit.DruLogPanel

logInfoPanel - Variable in class org.catacomb.druid.dialog.ProgressLogDialogController

LogMessageBoard - Class in org.catacomb.druid.market

LogMessageBoard() - Constructor for class org.catacomb.druid.market.LogMessageBoard

LogMessageGenerator - Interface in org.catacomb.interlish.structure

LogNotificand - Interface in org.catacomb.interlish.structure

LogPanel - Class in org.catacomb.druid.blocks

LogPanel() - Constructor for class org.catacomb.druid.blocks.LogPanel

logUnresolved() - Method in class org.catacomb.druid.market.HookupBoard

logUnresolved(String) - Method in class org.catacomb.druid.market.ProducerConsumerBoard

logUnresolved(HashMap<?, ?>, String, String) - Method in class org.catacomb.druid.market.ProducerConsumerBoard

logUnresolved() - Method in interface org.catacomb.interlish.structure.Marketplace

longError(String) - Static method in class org.catacomb.report.E

longInfo(String) - Static method in class org.catacomb.report.E

longInfo(String) - Static method in class org.textensor.report.E

lookupCheck() - Method in class org.textensor.stochdiff.numeric.stochastic.NGoTable

lookupTest() - Static method in class org.textensor.stochdiff.numeric.stochastic.NGoTable

lookupTimeBS() - Method in class org.textensor.stochdiff.numeric.stochastic.NGoTable

lookupTimeSeq() - Method in class org.textensor.stochdiff.numeric.stochastic.NGoTable

lookupTimeSwitch() - Method in class org.textensor.stochdiff.numeric.stochastic.NGoTable

LOW - Static variable in interface org.textensor.vis.Visualizer

LOWER_MASK - Static variable in class org.textensor.stochdiff.numeric.math.MersenneTwister

lpoints - Variable in class org.textensor.stochdiff.numeric.morph.SpineProfile

lr - Variable in class org.catacomb.graph.gui.DataDisplay

lSize - Variable in class org.textensor.stochdiff.numeric.morph.VolumeLine

LU() - Method in class org.catacomb.numeric.math.Matrix

LU() - Method in class org.textensor.stochdiff.numeric.math.Matrix

lubksb(double[]) - Method in class org.catacomb.numeric.math.Matrix

lubksb(Column) - Method in class org.textensor.stochdiff.numeric.math.Matrix

lubksb(double[]) - Method in class org.textensor.stochdiff.numeric.math.Matrix

LUSolve(double[][], double[]) - Static method in class org.catacomb.numeric.math.Matrix

LUSolve(double[][], double[]) - Static method in class org.catacomb.numeric.math.SMatrix

LUSolve(double[][], double[]) - Static method in class org.textensor.stochdiff.numeric.math.Matrix

LUSolve(Column) - Method in class org.textensor.stochdiff.numeric.math.Matrix

lvprod(double[]) - Method in class org.catacomb.numeric.math.Matrix

lvprod(double[]) - Method in class org.textensor.stochdiff.numeric.math.Matrix

LZWEncoder - Class in org.catacomb.movie.gif

LZWEncoder(int, int, byte[], int) - Constructor for class org.catacomb.movie.gif.LZWEncoder

M

M - Static variable in class org.textensor.stochdiff.numeric.math.MersenneTwister

m3B - Variable in class org.catacomb.graph.gui.WorldTransform

m3xx - Variable in class org.catacomb.graph.gui.WorldTransform

m3xy - Variable in class org.catacomb.graph.gui.WorldTransform

m3xz - Variable in class org.catacomb.graph.gui.WorldTransform

m3yx - Variable in class org.catacomb.graph.gui.WorldTransform

m3yy - Variable in class org.catacomb.graph.gui.WorldTransform

m3yz - Variable in class org.catacomb.graph.gui.WorldTransform

m3zx - Variable in class org.catacomb.graph.gui.WorldTransform

m3zy - Variable in class org.catacomb.graph.gui.WorldTransform

m3zz - Variable in class org.catacomb.graph.gui.WorldTransform

m_cls - Variable in class org.catacomb.interlish.reflect.ReflectionWrapper

mag01 - Variable in class org.textensor.stochdiff.numeric.math.MersenneTwister

MAGENTA - Static variable in class org.catacomb.numeric.phys.Phys

MAGIC_SDJ - Static variable in class org.catacomb.serial.jar.CustomJar

MAGIC_ZIP - Static variable in class org.catacomb.serial.jar.CustomJar

main(String[]) - Static method in class org.catacomb.dataview.BatchImageMaker

main(String[]) - Static method in class org.catacomb.dataview.CCViz

main(String[]) - Static method in class org.catacomb.dataview.CCVizTmp

main(String[]) - Static method in class org.catacomb.dataview.DataViewer

main(String[]) - Static method in class org.catacomb.dataview.demo.FormatTest

main(String[]) - Static method in class org.catacomb.dataview.DView

main(String[]) - Static method in class org.catacomb.dataview.ImageMaker

main(String[]) - Static method in class org.catacomb.dataview.Plot

main(String[]) - Static method in class org.catacomb.dataview.Plotter

main(String[]) - Static method in class org.catacomb.druid.manifest.MultiManifester

main(String[]) - Static method in class org.catacomb.druid.swing.split.SplitterExample

main(String[]) - Static method in class org.catacomb.geom.Geom

main(String[]) - Static method in class org.catacomb.graph.arbor.SegmentDemo

main(String[]) - Static method in class org.catacomb.graph.gui.CanvasTest

main(String[]) - Static method in class org.catacomb.graph.gui.DataDisplay

main(String[]) - Static method in class org.catacomb.graph.gui.Iconizer

main(String[]) - Static method in class org.catacomb.graph.gui.ZoneDemo

main(String[]) - Static method in class org.catacomb.icon.splash.Splasher

main(String[]) - Static method in class org.catacomb.numeric.math.DiagonalBlockMatrix

MAIN - Static variable in class org.catacomb.serial.jar.CustomJar

main(String[]) - Static method in class org.catacomb.serial.om.ElementTest

main(String[]) - Static method in class org.catacomb.util.DiffPrint

main(String[]) - Static method in class org.catacomb.util.FileLister

main(String[]) - Static method in class org.catacomb.util.StringUtil

main(String[]) - Static method in class org.catacomb.xdoc.TextTagger

main(String[]) - Static method in class org.textensor.stochdiff.examples.branch.BranchTest

main(String[]) - Static method in class org.textensor.stochdiff.examples.branch.BranchTest3

main(String[]) - Static method in class org.textensor.stochdiff.examples.ictest.ICTest

main(String[]) - Static method in class org.textensor.stochdiff.examples.morphsurf.MSTest

main(String[]) - Static method in class org.textensor.stochdiff.examples.morphtest.MorphTest

main(String[]) - Static method in class org.textensor.stochdiff.examples.NOEPAC.DetTest

main(String[]) - Static method in class org.textensor.stochdiff.examples.plane.PlaneTest

main(String[]) - Static method in class org.textensor.stochdiff.examples.regions.RegionsTest

main(String[]) - Static method in class org.textensor.stochdiff.examples.restart.ReduceTest

main(String[]) - Static method in class org.textensor.stochdiff.examples.restart.RestartTest

main(String[]) - Static method in class org.textensor.stochdiff.examples.smoothvolume.SmoothVolumeTest

main(String[]) - Static method in class org.textensor.stochdiff.examples.volume.VolumeTest

main(String[]) - Static method in class org.textensor.stochdiff.numeric.math.MersenneTwister

main(String[]) - Static method in class org.textensor.stochdiff.numeric.stochastic.BinomialTable

main(String[]) - Static method in class org.textensor.stochdiff.numeric.stochastic.NGoTable

main(String[]) - Static method in class org.textensor.stochdiff.numeric.stochastic.TimeTests

main(String[]) - Static method in class org.textensor.stochdiff.reduce.Reduce

main(String[]) - Static method in class org.textensor.stochdiff.SDGaussianProblem

main(String[]) - Static method in class org.textensor.stochdiff.SDTest1Stoch

main(String[]) - Static method in class org.textensor.stochdiff.SDTest4

main(String[]) - Static method in class org.textensor.stochdiff.SDTestDet

main(String[]) - Static method in class org.textensor.stochdiff.SDTestStoch

main(String[]) - Static method in class org.textensor.stochdiff.SDTestStochA

main(String[]) - Static method in class org.textensor.stochdiff.SDTestSuite1A

main(String[]) - Static method in class org.textensor.stochdiff.SDTestSuite2A

main(String[]) - Static method in class org.textensor.stochdiff.SDTestSuite3A

main(String[]) - Static method in class org.textensor.stochdiff.SDTestSuite3B

main(String[]) - Static method in class org.textensor.stochdiff.StepgenTests

main(String[]) - Static method in class org.textensor.stochdiff.StochDiff

main(String[]) - Static method in class org.textensor.vis.CCViz3D

main(String[]) - Static method in class org.textensor.vis.Icing3DViewer

mainFrame - Variable in class org.catacomb.dataview.DataviewController

mainFrame - Variable in class org.catacomb.druid.gui.base.DruEditorWindow

mainInstance - Variable in class org.catacomb.serial.state.MainState

mainInstance - Variable in class org.catacomb.serial.state.MainType

mainPanel - Variable in class org.catacomb.dataview.DataviewController

mainPanel - Variable in class org.catacomb.druid.gui.base.DruAutonomousPanel

mainPanel - Variable in class org.catacomb.druid.gui.base.DruInsert

mainPanel - Variable in class org.catacomb.druid.gui.base.PanelPack

MainState - Class in org.catacomb.serial.state

MainState(StateInstance) - Constructor for class org.catacomb.serial.state.MainState

mainState - Variable in class org.catacomb.serial.state.ModelState

MainType - Class in org.catacomb.serial.state

MainType(TypeInstance) - Constructor for class org.catacomb.serial.state.MainType

mainType - Variable in class org.catacomb.serial.state.ModelState

make(String) - Method in interface org.catacomb.interlish.structure.Factory

make(String) - Method in interface org.catacomb.interlish.structure.Specifier

make(String) - Method in class org.catacomb.numeric.data.NumDataSetFactory

makeActor() - Method in class org.catacomb.druid.blocks.ListClickArea

makeAnimatedGif(File) - Method in class org.catacomb.dataview.FrameController

makeAnimatedGif(File) - Method in class org.catacomb.dataview.gui.FramePlayerController

makeAreaHM() - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

makeArrayElement(Object) - Method in class org.catacomb.serial.OmElementizer

makeArrayList(Object) - Static method in class org.catacomb.interlish.reflect.Narrower

makeArrayList(Object) - Static method in class org.textensor.xml.Narrower

makeAttachmentPoint() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

makeBearing(double, double) - Static method in class org.catacomb.interlish.content.Heading

makeBlock() - Method in class org.catacomb.druid.xtext.parse.TextSplitter

makeBoolean(Object) - Static method in class org.catacomb.interlish.reflect.Narrower

makeBoolean(Object) - Static method in class org.textensor.xml.Narrower

makeBooleanArray(Object) - Static method in class org.catacomb.interlish.reflect.Narrower

makeBooleanArray(Object) - Static method in class org.textensor.xml.Narrower

makeBorder(int, Color) - Static method in class org.catacomb.druid.swing.BorderUtil

makeBorder(int) - Method in class org.catacomb.druid.swing.RolloverEffect

makeBorder(int) - Method in class org.catacomb.graph.gui.RolloverEffect

makeBorders() - Method in class org.catacomb.druid.swing.RolloverEffect

makeBorders() - Method in class org.catacomb.graph.gui.RolloverEffect

makeButton(String) - Method in class org.catacomb.druid.gui.edit.DruButton

makeButton(String) - Method in class org.catacomb.druid.gui.edit.DruToggleButton

makeChildlessCopy() - Method in class org.catacomb.druid.util.tree.RelationNode

makeClassElement(Object) - Method in class org.catacomb.serial.om.OmElementFactory

makeColor(Object) - Method in class org.textensor.vis.Icing3DViewer

makeCompactGrid(Container, int, int, int, int, int, int) - Static method in class org.catacomb.druid.swing.SpringUtilities

Aligns the first rows * cols components of parent in a grid.

makeCompoundBorder(Border, Border) - Static method in class org.catacomb.druid.swing.BorderUtil

makeConeSurfacePart(double, double, double, double, double, int, int) - Method in class org.textensor.stochdiff.disc.CurvedVolumeSlice

makeContext(Object) - Static method in class org.catacomb.dataview.read.FUImportContext

makeCopy() - Method in class org.catacomb.be.ChangeEvent

makeCopy() - Method in class org.catacomb.datalish.Box

makeCopy() - Method in class org.catacomb.druid.xtext.base.NewlineBlock

makeCopy() - Method in class org.catacomb.druid.xtext.base.PunctuationBlock

makeCopy() - Method in class org.catacomb.druid.xtext.base.TextBlock

makeCopy() - Method in class org.catacomb.druid.xtext.base.WordBlock

makeCopy() - Method in class org.catacomb.druid.xtext.data.XType

makeCopy() - Method in class org.catacomb.graph.drawing.Shape

makeCopy() - Method in class org.catacomb.graph.gui.DataView

makeCopy() - Method in class org.catacomb.numeric.difnet.CellPoint

makeCopy() - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

makeDataSet(Element) - Method in class org.catacomb.numeric.data.NumDataSetFactory

makeDDArray(Object) - Static method in class org.catacomb.interlish.reflect.Narrower

makeDDArray(Object) - Static method in class org.textensor.xml.Narrower

makeDefaultAppearance() - Method in class org.textensor.vis.SceneGraphBuilder

makeDefaultColorTable() - Static method in class org.catacomb.interlish.content.ColorTable

makeDefaultSprite(double) - Static method in class org.catacomb.graph.gui.SimpleVectorSprite

makeDefaultSprite() - Static method in class org.catacomb.numeric.data.XYVectorSprite

makeDouble(Object) - Static method in class org.catacomb.interlish.reflect.Narrower

makeDouble(Object) - Static method in class org.textensor.xml.Narrower

makeDoubleArray(Object) - Static method in class org.catacomb.interlish.reflect.Narrower

makeDoubleArray(Object) - Static method in class org.textensor.xml.Narrower

makeDoubleArrayElement(double[]) - Method in class org.catacomb.serial.OmElementizer

makeDoubleMatrix(double[][]) - Static method in class org.textensor.stochdiff.numeric.math.Matrix

nondestructively copy

makeDummyTree() - Method in class org.textensor.vis.Icing3DViewer

makeElement(ElementFactory, Elementizer) - Method in class org.catacomb.interlish.content.KeyedList

makeElement(String) - Method in interface org.catacomb.interlish.structure.ElementFactory

makeElement(String, String) - Method in interface org.catacomb.interlish.structure.ElementFactory

makeElement(ElementFactory, Elementizer) - Method in interface org.catacomb.interlish.structure.ElementWriter

makeElement(ElementFactory, Elementizer) - Method in class org.catacomb.numeric.data.NumDataSet

makeElement(String) - Method in class org.catacomb.serial.om.OmElementFactory

makeElement(String, String) - Method in class org.catacomb.serial.om.OmElementFactory

makeElement(Object) - Method in class org.catacomb.serial.OmElementizer

makeElement(String, String) - Method in class org.catacomb.xdoc.TextTagger

makeElementFor(Object) - Method in interface org.catacomb.interlish.structure.ElementFactory

makeElementFor(Object) - Method in class org.catacomb.serial.om.OmElementFactory

makeEmptyBorder(int) - Static method in class org.catacomb.druid.swing.BorderUtil

makeEmptyBorder(int, int, int, int) - Static method in class org.catacomb.druid.swing.BorderUtil

makeEnd(double, double, double, double, double, double, int) - Method in class org.textensor.stochdiff.disc.CurvedVolumeSlice

makeEnd(double, double, int, int) - Method in class org.textensor.stochdiff.disc.SpineLocator

makeErrorIcon() - Static method in class org.catacomb.graph.drawing.VectorIcon

makeEtchedBorder(Color) - Static method in class org.catacomb.druid.swing.BorderUtil

makeEtchedUpBorder(Color) - Static method in class org.catacomb.druid.swing.BorderUtil

makeFigure(Element) - Method in class org.catacomb.dataview.BatchImageMaker

makeFullID() - Method in class org.catacomb.druid.manifest.DecFile

makeGrid(Container, int, int, int, int, int, int) - Static method in class org.catacomb.druid.swing.SpringUtilities

Aligns the first rows * cols components of parent in a grid.

makeIIArray(Object) - Static method in class org.catacomb.interlish.reflect.Narrower

makeIIArray(Object) - Static method in class org.textensor.xml.Narrower

makeImage(int, int, String) - Method in class org.catacomb.dataview.Plot

makeImage(int, int, File) - Method in class org.catacomb.dataview.Plot

makeImage(int, int, double[], File) - Method in class org.catacomb.dataview.Plot

makeImage(int, int, Box, File) - Method in class org.catacomb.dataview.Plot

makeImage(VectorIcon, int, int) - Method in class org.catacomb.graph.drawing.IconImageCache

makeImages(File) - Method in class org.catacomb.dataview.DView

makeImages(File) - Method in class org.catacomb.dataview.gui.DViewController

makeIndexTable() - Method in class org.catacomb.numeric.mesh.DifMesh

makeInnerMesh() - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

makeInt(Object) - Static method in class org.catacomb.interlish.reflect.Narrower

makeInt(Object) - Static method in class org.textensor.xml.Narrower

makeIntArray(Object) - Static method in class org.catacomb.interlish.reflect.Narrower

makeIntArray(Object) - Static method in class org.textensor.xml.Narrower

makeIntArrayElement(int[]) - Method in class org.catacomb.serial.OmElementizer

makeIthPanel(Context, int) - Method in class org.catacomb.dataview.build.Dataview

makeJavaImports() - Method in class org.catacomb.act.Classdef

makeLims() - Method in class org.catacomb.dataview.DataPlotPainter

makeLineBoundary(double[], double[]) - Static method in class org.catacomb.graph.gui.Geom

makeListElement(List) - Method in class org.catacomb.serial.OmElementizer

makeMenu(StringTree) - Method in class org.catacomb.druid.gui.edit.DruMenu

makeMesh(MeshBuilder) - Method in class org.catacomb.graph.arbor.SegmentGraph

makeMesh(MeshBuilder) - Method in interface org.catacomb.interlish.structure.MeshInstructor

makeMeshMask() - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

makeMiniAnimatedGif(File, int, int) - Method in class org.catacomb.dataview.FrameController

makeMiniAnimatedGif(File, int, int) - Method in class org.catacomb.dataview.gui.FramePlayerController

makeMovie(Element) - Method in class org.catacomb.dataview.BatchImageMaker

makeMovie(File) - Method in class org.catacomb.dataview.DataviewController

makeMovie(File) - Method in class org.catacomb.dataview.FrameController

makeMovie(File) - Method in class org.catacomb.dataview.gui.FramePlayerController

makeNetStructure(NetFactory) - Method in class org.catacomb.numeric.mesh.DifMesh

makeObjectElement(Object) - Method in class org.catacomb.serial.OmElementizer

makeObjectElementByReflection(Object, OmElementizer) - Static method in class org.catacomb.serial.Reflector

makeOffsetShapes(double, double) - Method in class org.catacomb.graph.drawing.FixedDrawing

makeOuter(double, double, double, double, int, int) - Method in class org.textensor.stochdiff.disc.SpineLocator

makePackageStatement() - Method in class org.catacomb.act.Classdef

makePage(Object) - Method in interface org.catacomb.interlish.structure.PageMaker

makePanel(Context) - Method in class org.catacomb.dataview.build.CompoundView

makePanel(Context) - Method in class org.catacomb.dataview.build.DataPlot

makePanel(Context) - Method in class org.catacomb.dataview.build.Dataview

makePanel(Context) - Method in class org.catacomb.dataview.build.DVPanel

makePanel(Context) - Method in class org.catacomb.dataview.build.FrameSelector

makePCBoard(String) - Method in class org.catacomb.druid.market.HookupBoard

makePendingIcon() - Static method in class org.catacomb.graph.drawing.VectorIcon

makePoints() - Method in class org.catacomb.graph.drawing.Shape

makePopulation() - Method in class org.textensor.stochdiff.model.SpineAllocation

makeProfile() - Method in class org.textensor.stochdiff.model.SpineType

makeProtos() - Method in class org.catacomb.graph.drawing.Shape

makeRaisedBorder(Color, Color) - Static method in class org.catacomb.druid.swing.BorderUtil

makeRandomAppearances(int) - Method in class org.textensor.vis.SceneGraphBuilder

makeRanges(double, int) - Method in class org.textensor.stochdiff.numeric.morph.VolumeLine

makeRanges() - Method in class org.textensor.stochdiff.numeric.morph.VolumeLine

makeReactionTable() - Method in class org.textensor.stochdiff.model.ReactionScheme

makeReader(byte[], FUImportContext) - Method in interface org.catacomb.dataview.read.ContentType

makeReader(byte[], FUImportContext) - Method in class org.catacomb.dataview.read.CustomJarContentType

makeReader(byte[], FUImportContext) - Method in class org.catacomb.dataview.read.NumericContentType

makeReader(byte[], FUImportContext) - Method in class org.catacomb.dataview.read.XMLContentType

makeRefIcon() - Static method in class org.catacomb.graph.drawing.VectorIcon

makeRegionConcentrations(String[]) - Method in class org.textensor.stochdiff.numeric.BaseCalc

makeRegionSurfaceDensities(String[]) - Method in class org.textensor.stochdiff.numeric.BaseCalc

makes - Variable in class org.catacomb.numeric.data.NumDataSetFactory

makeSampledBiExponential(double, double, double) - Static method in class org.catacomb.numeric.math.NetMath

makeSampledBiExponential(double, double, double, double) - Static method in class org.catacomb.numeric.math.NetMath

makeShape() - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

makeShapes() - Method in class org.catacomb.graph.drawing.FixedDrawing

makeSlashPath(TreePath) - Method in class org.catacomb.druid.swing.DCheckboxTree

makeSliceSurface(double, double, double, double, double, int, int) - Method in class org.textensor.stochdiff.disc.CurvedVolumeSlice

makeSlightlySunkenBorder(Color) - Static method in class org.catacomb.druid.swing.BorderUtil

makeSpecifiedElement(Specified) - Method in class org.catacomb.serial.om.OmElementFactory

makeStandaloneElementFor(Object) - Method in interface org.catacomb.interlish.structure.ElementFactory

makeStandaloneElementFor(Object) - Method in class org.catacomb.serial.om.OmElementFactory

makeStimulationTable(ReactionTable) - Method in class org.textensor.stochdiff.model.StimulationSet

makeStringArray(Object) - Static method in class org.catacomb.interlish.reflect.Narrower

makeStringArray(Object) - Static method in class org.textensor.xml.Narrower

makeStringElement(String) - Method in class org.catacomb.serial.OmElementizer

makeStroke(String, double) - Method in class org.catacomb.graph.gui.DisplayStrokes

makeSunkenBorder(Color, Color) - Static method in class org.catacomb.druid.swing.BorderUtil

makeThumbnailMovie(File) - Method in class org.catacomb.dataview.DataviewController

makeThumbnailMovie(File) - Method in class org.catacomb.dataview.FrameController

makeThumbnailMovie(File) - Method in class org.catacomb.dataview.gui.FramePlayerController

makeTimestamp() - Static method in class org.catacomb.interlish.report.Message

makeTriangles(double, double, double, double, double, double, double) - Method in class org.textensor.stochdiff.disc.CurvedVolumeSlice

makeTriangles(double, double, double, double) - Method in class org.textensor.stochdiff.disc.SpineLocator

makeVectorSet(Element) - Method in class org.catacomb.numeric.data.NumDataSetFactory

makeXMLLine() - Method in class org.textensor.stochdiff.model.Concentration

makeXMLLine() - Method in class org.textensor.stochdiff.model.NanoMolarity

makeXMLLine() - Method in class org.textensor.stochdiff.model.NumberDensity

makeXMLLine() - Method in class org.textensor.stochdiff.model.PicoSD

makeXMLLine() - Method in class org.textensor.stochdiff.model.SurfaceDensity

makeZeroBorder() - Static method in class org.catacomb.druid.swing.BorderUtil

ManipXYLocation - Class in org.catacomb.graph.arbor

ManipXYLocation(double, double) - Constructor for class org.catacomb.graph.arbor.ManipXYLocation

map(int, int, int) - Method in class org.catacomb.movie.gif.NeuQuant

mark() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

mark(String) - Method in class org.catacomb.numeric.data.DataExtractor

mark() - Method in class org.catacomb.numeric.data.DataItem

mark(HashMap<String, NumDataSet>) - Method in class org.catacomb.numeric.data.DataSlice

mark(NumDataSet) - Method in class org.catacomb.numeric.data.DataSlice

mark - Variable in class org.catacomb.numeric.difnet.calc.NetMapLink

mark - Variable in class org.catacomb.numeric.difnet.calc.NetMapNode

marked - Variable in class org.catacomb.numeric.data.DataItem

MarkerBlock - Class in org.catacomb.druid.xtext.base

MarkerBlock(ContainerBlock) - Constructor for class org.catacomb.druid.xtext.base.MarkerBlock

markers - Variable in class org.catacomb.datalish.SpriteData

Marketeer - Interface in org.catacomb.interlish.structure

Marketplace - Interface in org.catacomb.interlish.structure

markIntVector() - Method in class org.catacomb.numeric.data.DataSlice

markNeeded(DataExtractor) - Method in class org.catacomb.dataview.build.Displayable

markNeeded(DataExtractor) - Method in class org.catacomb.dataview.build.DisplayablePoint

markNeeded(DataExtractor) - Method in class org.catacomb.dataview.build.Line

markNeeded() - Method in class org.catacomb.dataview.DataPlotPainter

markNeeded() - Method in class org.catacomb.dataview.DataviewController

markNeeded() - Method in class org.catacomb.dataview.FrameController

markScalar() - Method in class org.catacomb.numeric.data.DataSlice

markVector() - Method in class org.catacomb.numeric.data.DataSlice

mask - Variable in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

masks - Variable in class org.catacomb.movie.gif.LZWEncoder

matchCalls - Variable in class org.catacomb.act.CaseRelayBody

matches(TextBlock) - Method in class org.catacomb.druid.xtext.base.NewlineBlock

matches(TextBlock) - Method in class org.catacomb.druid.xtext.base.PunctuationBlock

matches(TextBlock) - Method in class org.catacomb.druid.xtext.base.TextBlock

matches(TextBlock) - Method in class org.catacomb.druid.xtext.base.WordBlock

matches(ConnectionFlavor) - Method in class org.catacomb.interlish.content.ConnectionFlavor

matches(NumDataSet) - Method in class org.catacomb.numeric.data.NumDataSet

matchingFiles(String) - Static method in class org.catacomb.util.FileUtil

matchingFiles(String) - Static method in class org.textensor.util.FileUtil

MathUtil - Class in org.catacomb.util

MathUtil() - Constructor for class org.catacomb.util.MathUtil

Matrix - Class in org.catacomb.numeric.math

Matrix(int) - Constructor for class org.catacomb.numeric.math.Matrix

Matrix(double[][]) - Constructor for class org.catacomb.numeric.math.Matrix

Matrix - Class in org.textensor.stochdiff.numeric.math

Matrix(int) - Constructor for class org.textensor.stochdiff.numeric.math.Matrix

Matrix(int, int) - Constructor for class org.textensor.stochdiff.numeric.math.Matrix

Matrix(double[][]) - Constructor for class org.textensor.stochdiff.numeric.math.Matrix

Matrix(int, double[]) - Constructor for class org.textensor.stochdiff.numeric.math.Matrix

MATRIX_A - Static variable in class org.textensor.stochdiff.numeric.math.MersenneTwister

max(double[]) - Static method in class org.catacomb.datalish.array.Array

max - Variable in class org.catacomb.dataview.build.Axis

max - Variable in class org.catacomb.dataview.formats.TableDataHandler

max - Variable in class org.catacomb.dataview.model.AxisLayout

max - Variable in class org.catacomb.druid.blocks.FloatSlider

max - Variable in class org.catacomb.druid.blocks.IntSlider

max - Variable in class org.catacomb.druid.blocks.SimpleSlider

max - Variable in class org.catacomb.druid.swing.DDotsPanel

max - Variable in class org.catacomb.druid.swing.DHRPanel

max(double, double) - Static method in class org.catacomb.numeric.math.DiagonalBlockMatrix

max(double[][]) - Static method in class org.catacomb.util.ArrayUtil

max(double[]) - Static method in class org.catacomb.util.MathUtil

max0 - Variable in class org.catacomb.druid.swing.DFloat

max0 - Variable in class org.catacomb.druid.swing.DInt

maxAbsElt() - Method in class org.catacomb.numeric.math.Matrix

maxAbsElt() - Method in class org.textensor.stochdiff.numeric.math.Matrix

maxAR - Variable in class org.textensor.stochdiff.disc.DiscSplitter

maxAspectRatio - Variable in class org.textensor.stochdiff.disc.CurvedVolumeSlice

maxAspectRatio - Variable in class org.textensor.stochdiff.model.Discretization

MaxAspectRatio - Class in org.textensor.stochdiff.model

MaxAspectRatio() - Constructor for class org.textensor.stochdiff.model.MaxAspectRatio

maxbits - Variable in class org.catacomb.movie.gif.LZWEncoder

maxch - Variable in class org.catacomb.numeric.data.EventSequence

maxcode - Variable in class org.catacomb.movie.gif.LZWEncoder

MAXCODE(int) - Method in class org.catacomb.movie.gif.LZWEncoder

maxD(double[]) - Static method in class org.catacomb.util.ArrayUtil

MaxElementSide - Class in org.textensor.stochdiff.model

MaxElementSide() - Constructor for class org.textensor.stochdiff.model.MaxElementSide

maximumLayoutSize(Container) - Method in class org.catacomb.druid.swing.split.SplitterLayout

maxIterationsSoFar - Variable in class org.textensor.stochdiff.numeric.pool.ImplicitEulerPoolCalc

maxlines - Variable in class org.catacomb.druid.blocks.ScrollingInfoPanel

maxmaxcode - Variable in class org.catacomb.movie.gif.LZWEncoder

maxnetpos - Static variable in class org.catacomb.movie.gif.NeuQuant

maxnp - Variable in class org.textensor.stochdiff.disc.SegmentSlicer

maxSideHM - Variable in class org.textensor.stochdiff.model.Discretization

mconc - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

mconc - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

mconc - Variable in class org.textensor.stochdiff.numeric.pool.DeterministicPoolCalc

mconc - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

MDA - Class in org.catacomb.numeric.array

MDA() - Constructor for class org.catacomb.numeric.array.MDA

mean - Variable in class org.catacomb.numeric.function.AR1Noise

meanRadius() - Method in class org.catacomb.interlish.content.RShape

MEDIUM - Static variable in interface org.textensor.vis.Visualizer

medWarning(String) - Static method in class org.catacomb.report.E

medWarning(String) - Static method in class org.textensor.report.E

Menu - Class in org.catacomb.druid.blocks

Menu() - Constructor for class org.catacomb.druid.blocks.Menu

Menu(String) - Constructor for class org.catacomb.druid.blocks.Menu

menu - Variable in class org.catacomb.druid.gui.edit.DruMenuButton

menu - Variable in class org.catacomb.druid.swing.DChoice

menu - Variable in class org.catacomb.druid.swing.DValueHistory

menuBar - Variable in class org.catacomb.druid.blocks.Frame

MenuBar - Class in org.catacomb.druid.blocks

MenuBar() - Constructor for class org.catacomb.druid.blocks.MenuBar

MenuButton - Class in org.catacomb.druid.blocks

MenuButton() - Constructor for class org.catacomb.druid.blocks.MenuButton

MenuButton(String) - Constructor for class org.catacomb.druid.blocks.MenuButton

menued - Variable in class org.catacomb.druid.swing.DPopLabel

Menued - Interface in org.catacomb.druid.swing

MenuItem - Class in org.catacomb.druid.blocks

MenuItem() - Constructor for class org.catacomb.druid.blocks.MenuItem

MenuItem(String) - Constructor for class org.catacomb.druid.blocks.MenuItem

menus - Variable in class org.catacomb.druid.blocks.MenuBar

merge(MeshPoint[], double, double, double) - Static method in class org.catacomb.numeric.mesh.Discretizer

merge(TreePoint[], double, double, double) - Method in class org.textensor.stochdiff.disc.SegmentMerger

mergeStubs(String, String) - Method in class org.catacomb.interlish.service.ScriptManager

mergeStubs(String, String) - Method in interface org.catacomb.interlish.service.ScriptMerger

MersenneTwister - Class in org.textensor.stochdiff.numeric.math

MersenneTwister() - Constructor for class org.textensor.stochdiff.numeric.math.MersenneTwister

MersenneTwister(long) - Constructor for class org.textensor.stochdiff.numeric.math.MersenneTwister

mesh - Variable in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

mesh - Variable in class org.catacomb.dataview.formats.MeshDataReader

Mesh - Interface in org.catacomb.interlish.structure

mesh2Controller - Variable in class org.catacomb.dataview.gui.CCVizController

Mesh2plusTimeController - Class in org.catacomb.dataview.gui

Mesh2plusTimeController() - Constructor for class org.catacomb.dataview.gui.Mesh2plusTimeController

Mesh2plusTimeDisplay - Class in org.catacomb.dataview.formats

Mesh2plusTimeDisplay() - Constructor for class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

meshBox - Variable in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

MeshBuilder - Interface in org.catacomb.interlish.structure

MeshDataReader - Class in org.catacomb.dataview.formats

MeshDataReader(File, DataReader) - Constructor for class org.catacomb.dataview.formats.MeshDataReader

meshDH - Variable in class org.catacomb.dataview.formats.MeshSummary

MeshInstructor - Interface in org.catacomb.interlish.structure

MeshNetConverter - Class in org.catacomb.numeric.mesh

MeshNetConverter() - Constructor for class org.catacomb.numeric.mesh.MeshNetConverter

MeshPoint - Interface in org.catacomb.numeric.mesh

MeshSummary - Class in org.catacomb.dataview.formats

MeshSummary(DataHandler) - Constructor for class org.catacomb.dataview.formats.MeshSummary

meshToNet(MeshPoint[], NetFactory) - Static method in class org.catacomb.numeric.mesh.MeshNetConverter

message(String) - Static method in class org.catacomb.druid.dialog.Dialoguer

message(int[], String) - Static method in class org.catacomb.druid.dialog.Dialoguer

message(int[], String, String) - Static method in class org.catacomb.druid.dialog.Dialoguer

Message - Class in org.catacomb.interlish.report

Message(String) - Constructor for class org.catacomb.interlish.report.Message

Message(String, String[]) - Constructor for class org.catacomb.interlish.report.Message

MESSAGE - Static variable in class org.catacomb.report.E

message(String) - Static method in class org.catacomb.report.E

message(String) - Static method in class org.textensor.report.E

messageDialogController - Static variable in class org.catacomb.druid.dialog.Dialoguer

MessageDialogController - Class in org.catacomb.druid.dialog

MessageDialogController() - Constructor for class org.catacomb.druid.dialog.MessageDialogController

messages - Variable in class org.catacomb.druid.guimodel.Log

meta - Variable in class org.textensor.stochdiff.neuroml.cable

meta - Variable in class org.textensor.stochdiff.neuroml.cell

meta - Class in org.textensor.stochdiff.neuroml

meta() - Constructor for class org.textensor.stochdiff.neuroml.meta

meta - Variable in class org.textensor.stochdiff.neuroml.MetaItem

meta - Variable in class org.textensor.stochdiff.neuroml.MorphMLProperties

meta_group - Variable in class org.textensor.stochdiff.neuroml.cable

meta_name - Variable in class org.textensor.stochdiff.neuroml.MetaItem

meta_property - Variable in class org.textensor.stochdiff.neuroml.MetaItem

meta_tag - Variable in class org.textensor.stochdiff.neuroml.MetaItem

meta_value - Variable in class org.textensor.stochdiff.neuroml.MetaItem

MetaContainer - Interface in org.textensor.stochdiff.neuroml

MetaItem - Class in org.textensor.stochdiff.neuroml

MetaItem(String) - Constructor for class org.textensor.stochdiff.neuroml.MetaItem

metas - Variable in class org.textensor.stochdiff.neuroml.meta

MethodBody - Class in org.catacomb.act

MethodBody() - Constructor for class org.catacomb.act.MethodBody

methodBody - Variable in class org.catacomb.act.MethodSignature

methodHT - Variable in class org.catacomb.druid.gui.base.DruActionRelay

methodName - Variable in class org.catacomb.act.MethodStub

methodName - Variable in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

methodName - Variable in class org.catacomb.druid.gui.edit.DruGCPanel

methodName - Variable in class org.catacomb.druid.gui.edit.DruMenu

methodName - Variable in class org.catacomb.druid.gui.edit.DruMenuItem

methods - Variable in class org.catacomb.act.Classdef

MethodSignature - Class in org.catacomb.act

MethodSignature(String) - Constructor for class org.catacomb.act.MethodSignature

MethodSignature(String, int) - Constructor for class org.catacomb.act.MethodSignature

MethodStub - Class in org.catacomb.act

MethodStub() - Constructor for class org.catacomb.act.MethodStub

michaelisConstant - Variable in class org.textensor.stochdiff.model.Reaction

MIDDLE - Static variable in class org.catacomb.graph.gui.Mouse

MIDDLE - Static variable in class org.catacomb.util.MouseUtil

middleButton() - Method in class org.catacomb.graph.gui.Mouse

midpoint(Position, Position) - Static method in class org.catacomb.be.Position

midpoint(Position, Position) - Static method in class org.textensor.stochdiff.geom.Geom

MIDYELLOW - Static variable in class org.catacomb.numeric.phys.Phys

MIME - Static variable in class org.catacomb.serial.jar.CustomJar

min(double[]) - Static method in class org.catacomb.datalish.array.Array

min - Variable in class org.catacomb.dataview.build.Axis

min - Variable in class org.catacomb.dataview.formats.TableDataHandler

min - Variable in class org.catacomb.dataview.model.AxisLayout

min - Variable in class org.catacomb.druid.blocks.FloatSlider

min - Variable in class org.catacomb.druid.blocks.IntSlider

min - Variable in class org.catacomb.druid.blocks.SimpleSlider

min - Variable in class org.catacomb.druid.swing.DDotsPanel

min - Variable in class org.catacomb.druid.swing.DHRPanel

min(double[][]) - Static method in class org.catacomb.util.ArrayUtil

min(double[]) - Static method in class org.catacomb.util.MathUtil

min0 - Variable in class org.catacomb.druid.swing.DFloat

min0 - Variable in class org.catacomb.druid.swing.DInt

minD(double[]) - Static method in class org.catacomb.util.ArrayUtil

minimumLayoutSize(Container) - Method in class org.catacomb.druid.swing.split.SplitterLayout

miniRecord() - Method in class org.catacomb.dataview.FrameController

miniRecord() - Method in class org.catacomb.dataview.gui.FramePlayerController

minor - Variable in class org.textensor.vis.IcingPoint

minpicturebytes - Static variable in class org.catacomb.movie.gif.NeuQuant

missedPress(Mouse) - Method in class org.catacomb.graph.gui.MouseHandler

missedPress(Mouse) - Method in class org.catacomb.graph.gui.PickHandler

MISSING - Static variable in class org.catacomb.report.E

missing(String) - Static method in class org.catacomb.report.E

missing() - Static method in class org.catacomb.report.E

missing(String) - Static method in class org.textensor.report.E

missing() - Static method in class org.textensor.report.E

mkCarrotoidTriangles(double, double, double, int, int, int) - Method in class org.textensor.vis.SceneGraphBuilder

mkSphereTriangles(double, int) - Method in class org.textensor.vis.SceneGraphBuilder

ml - Variable in class org.catacomb.druid.swing.DCheckboxMenuItem

ml - Variable in class org.catacomb.druid.swing.DPopLabel

MMmultiply(double[][], double[][]) - Static method in class org.catacomb.numeric.math.SMatrix

mmxx(double[]) - Method in class org.catacomb.graph.gui.PickableRegion

modal - Variable in class org.catacomb.druid.blocks.AutonomousDialog

modal - Variable in class org.catacomb.druid.blocks.Dialog

modality - Variable in class org.catacomb.druid.market.ConsumerAgent

modality - Variable in class org.catacomb.druid.market.ProducerConsumerBoard

modality - Variable in class org.catacomb.druid.market.SupplyClerk

mode - Variable in class org.textensor.stochdiff.numeric.stochastic.DiscretePStepGenerator

mode - Variable in class org.textensor.stochdiff.numeric.stochastic.FixedPStepGenerator

mode - Variable in class org.textensor.stochdiff.numeric.stochastic.NGoTable

mode - Variable in class org.textensor.vis.SceneGraphViewer

modeController - Variable in class org.catacomb.druid.gui.base.DruAssemblyPanel

ModeController - Interface in org.catacomb.interlish.structure

model - Variable in class org.catacomb.druid.swing.CheckTreeSelectionModel

model - Variable in class org.catacomb.druid.swing.TristateCheckBox

MODEL_CONTROL - Static variable in interface org.catacomb.interlish.service.ScriptSource

ModelBase - Class in org.textensor.stochdiff.model

ModelBase() - Constructor for class org.textensor.stochdiff.model.ModelBase

modelInstantiator - Variable in class org.catacomb.interlish.service.ScriptManager

ModelReader - Class in org.textensor.stochdiff.inter

ModelReader() - Constructor for class org.textensor.stochdiff.inter.ModelReader

ModelState - Class in org.catacomb.serial.state

ModelState() - Constructor for class org.catacomb.serial.state.ModelState

ModeSettable - Interface in org.catacomb.interlish.structure

modeSettables - Variable in class org.catacomb.druid.chunk.MouseModeController

ModeSetter - Interface in org.catacomb.interlish.structure

modifiable - Variable in class org.catacomb.graph.arbor.SegmentGraphVE

moperator - Variable in class org.catacomb.druid.chunk.MoviePlayController

morphml - Class in org.textensor.stochdiff.neuroml

morphml() - Constructor for class org.textensor.stochdiff.neuroml.morphml

MorphMLCableGroup - Class in org.textensor.stochdiff.neuroml

MorphMLCableGroup() - Constructor for class org.textensor.stochdiff.neuroml.MorphMLCableGroup

MorphMLPoint - Class in org.textensor.stochdiff.neuroml

MorphMLPoint() - Constructor for class org.textensor.stochdiff.neuroml.MorphMLPoint

MorphMLProperties - Class in org.textensor.stochdiff.neuroml

MorphMLProperties() - Constructor for class org.textensor.stochdiff.neuroml.MorphMLProperties

Morphology - Class in org.textensor.stochdiff.model

Morphology() - Constructor for class org.textensor.stochdiff.model.Morphology

morphology - Variable in class org.textensor.stochdiff.model.SDRun

morphologyFile - Variable in class org.textensor.stochdiff.model.SDRun

MorphPoint - Class in org.textensor.stochdiff.model

MorphPoint() - Constructor for class org.textensor.stochdiff.model.MorphPoint

MorphPoint(String, double, double, double, double) - Constructor for class org.textensor.stochdiff.model.MorphPoint

MorphTest - Class in org.textensor.stochdiff.examples.morphtest

MorphTest() - Constructor for class org.textensor.stochdiff.examples.morphtest.MorphTest

motionAware() - Method in class org.catacomb.graph.gui.MouseHandler

motionAware() - Method in class org.catacomb.graph.gui.PickHandler

motionChange(Mouse) - Method in class org.catacomb.graph.gui.MouseHandler

motionChange(Mouse) - Method in class org.catacomb.graph.gui.PickHandler

motionHandler - Variable in class org.catacomb.graph.gui.Mouse

Mouse - Class in org.catacomb.graph.gui

Mouse(WorldCanvas, boolean) - Constructor for class org.catacomb.graph.gui.Mouse

mouse - Variable in class org.catacomb.graph.gui.WorldCanvas

mouseActor - Variable in class org.catacomb.druid.swing.DBaseButton

mouseActor - Variable in class org.catacomb.druid.swing.DFillGuage

mouseActor - Variable in class org.catacomb.druid.swing.DLabel

mouseActor - Variable in class org.catacomb.druid.swing.DMouseRelay

MouseActor - Interface in org.catacomb.interlish.structure

mouseButtonPressed() - Method in class org.catacomb.druid.gui.base.DruPanel

mouseButtonPressed() - Method in interface org.catacomb.interlish.structure.MouseActor

mouseClicked(MouseEvent) - Method in class org.catacomb.druid.swing.DCheckboxList

mouseClicked(MouseEvent) - Method in class org.catacomb.druid.swing.DCheckboxTree

mouseClicked(MouseEvent) - Method in class org.catacomb.druid.swing.DChoice

mouseClicked(MouseEvent) - Method in class org.catacomb.druid.swing.DDropCanvas

mouseClicked(MouseEvent) - Method in class org.catacomb.druid.swing.DFillGuage

mouseClicked(MouseEvent) - Method in class org.catacomb.druid.swing.DFloatSlider

mouseClicked(MouseEvent) - Method in class org.catacomb.druid.swing.DList

mouseClicked(MouseEvent) - Method in class org.catacomb.druid.swing.DMouseRelay

mouseClicked(MouseEvent) - Method in class org.catacomb.druid.swing.dnd.ClickableRegionStore

mouseClicked(MouseEvent) - Method in class org.catacomb.druid.swing.DRadioButton

mouseClicked(MouseEvent) - Method in class org.catacomb.druid.swing.DSlider

mouseClicked(MouseEvent) - Method in class org.catacomb.druid.swing.DToggleButton

mouseClicked(MouseEvent) - Method in class org.catacomb.druid.swing.DTree

mouseClicked(MouseEvent) - Method in class org.catacomb.druid.swing.DValueHistory

mouseClicked(MouseEvent) - Method in class org.catacomb.graph.gui.Mouse

mouseClicked(MouseEvent) - Method in class org.textensor.vis.SceneGraphViewer

mouseDrag(MouseEvent) - Method in class org.catacomb.druid.swing.split.DSplitterBar

mouseDragged(MouseEvent) - Method in class org.catacomb.druid.swing.DFloatSlider

mouseDragged(MouseEvent) - Method in class org.catacomb.druid.swing.dnd.ClickableRegionStore

mouseDragged(MouseEvent) - Method in class org.catacomb.druid.swing.DSlider

mouseDragged(MouseEvent) - Method in class org.catacomb.druid.swing.split.SplitterBarMouseMotionListener

mouseDragged(MouseEvent) - Method in class org.catacomb.graph.gui.Mouse

mouseDragged(MouseEvent) - Method in class org.textensor.vis.SceneGraphViewer

mouseEnter(MouseEvent) - Method in class org.catacomb.druid.swing.split.DSplitterBar

mouseEntered(MouseEvent) - Method in class org.catacomb.druid.swing.DCheckboxList

mouseEntered(MouseEvent) - Method in class org.catacomb.druid.swing.DCheckboxTree

mouseEntered(MouseEvent) - Method in class org.catacomb.druid.swing.DChoice

mouseEntered(MouseEvent) - Method in class org.catacomb.druid.swing.DDropCanvas

mouseEntered(MouseEvent) - Method in class org.catacomb.druid.swing.DFillGuage

mouseEntered(MouseEvent) - Method in class org.catacomb.druid.swing.DFloatSlider

mouseEntered(MouseEvent) - Method in class org.catacomb.druid.swing.DList

mouseEntered(MouseEvent) - Method in class org.catacomb.druid.swing.DMouseRelay

mouseEntered(MouseEvent) - Method in class org.catacomb.druid.swing.dnd.ClickableRegionStore

mouseEntered(MouseEvent) - Method in class org.catacomb.druid.swing.DRadioButton

mouseEntered(MouseEvent) - Method in class org.catacomb.druid.swing.DSlider

mouseEntered(MouseEvent) - Method in class org.catacomb.druid.swing.DToggleButton

mouseEntered(MouseEvent) - Method in class org.catacomb.druid.swing.DTree

mouseEntered(MouseEvent) - Method in class org.catacomb.druid.swing.DValueHistory

mouseEntered(MouseEvent) - Method in class org.catacomb.druid.swing.RolloverEffect

mouseEntered(MouseEvent) - Method in class org.catacomb.druid.swing.split.SplitterBarMouseListener

mouseEntered(MouseEvent) - Method in class org.catacomb.graph.gui.Mouse

mouseEntered(MouseEvent) - Method in class org.catacomb.graph.gui.RolloverEffect

mouseEntered(MouseEvent) - Method in class org.textensor.vis.SceneGraphViewer

mouseExit(MouseEvent) - Method in class org.catacomb.druid.swing.split.DSplitterBar

mouseExited(MouseEvent) - Method in class org.catacomb.druid.swing.DCheckboxList

mouseExited(MouseEvent) - Method in class org.catacomb.druid.swing.DCheckboxTree

mouseExited(MouseEvent) - Method in class org.catacomb.druid.swing.DChoice

mouseExited(MouseEvent) - Method in class org.catacomb.druid.swing.DDropCanvas

mouseExited(MouseEvent) - Method in class org.catacomb.druid.swing.DFillGuage

mouseExited(MouseEvent) - Method in class org.catacomb.druid.swing.DFloatSlider

mouseExited(MouseEvent) - Method in class org.catacomb.druid.swing.DList

mouseExited(MouseEvent) - Method in class org.catacomb.druid.swing.DMouseRelay

mouseExited(MouseEvent) - Method in class org.catacomb.druid.swing.dnd.ClickableRegionStore

mouseExited(MouseEvent) - Method in class org.catacomb.druid.swing.DRadioButton

mouseExited(MouseEvent) - Method in class org.catacomb.druid.swing.DSlider

mouseExited(MouseEvent) - Method in class org.catacomb.druid.swing.DToggleButton

mouseExited(MouseEvent) - Method in class org.catacomb.druid.swing.DTree

mouseExited(MouseEvent) - Method in class org.catacomb.druid.swing.DValueHistory

mouseExited(MouseEvent) - Method in class org.catacomb.druid.swing.RolloverEffect

mouseExited(MouseEvent) - Method in class org.catacomb.druid.swing.split.SplitterBarMouseListener

mouseExited(MouseEvent) - Method in class org.catacomb.graph.gui.Mouse

mouseExited(MouseEvent) - Method in class org.catacomb.graph.gui.RolloverEffect

mouseExited(MouseEvent) - Method in class org.textensor.vis.SceneGraphViewer

MouseHandler - Class in org.catacomb.graph.gui

MouseHandler() - Constructor for class org.catacomb.graph.gui.MouseHandler

MouseModeController - Class in org.catacomb.druid.chunk

MouseModeController() - Constructor for class org.catacomb.druid.chunk.MouseModeController

mouseMoved(MouseEvent) - Method in class org.catacomb.druid.swing.DFloatSlider

mouseMoved(MouseEvent) - Method in class org.catacomb.druid.swing.dnd.ClickableRegionStore

mouseMoved(MouseEvent) - Method in class org.catacomb.druid.swing.DSlider

mouseMoved(MouseEvent) - Method in class org.catacomb.graph.gui.Mouse

mouseMoved(MouseEvent) - Method in class org.textensor.vis.SceneGraphViewer

mouseOn - Variable in class org.catacomb.druid.swing.DToggleButton

mousePressed(MouseEvent) - Method in class org.catacomb.druid.swing.DCheckboxList

mousePressed(MouseEvent) - Method in class org.catacomb.druid.swing.DCheckboxTree

mousePressed(MouseEvent) - Method in class org.catacomb.druid.swing.DChoice

mousePressed(MouseEvent) - Method in class org.catacomb.druid.swing.DDropCanvas

mousePressed(MouseEvent) - Method in class org.catacomb.druid.swing.DFillGuage

mousePressed(MouseEvent) - Method in class org.catacomb.druid.swing.DFloatSlider

mousePressed(MouseEvent) - Method in class org.catacomb.druid.swing.DList

mousePressed(MouseEvent) - Method in class org.catacomb.druid.swing.DMouseRelay

mousePressed(MouseEvent) - Method in class org.catacomb.druid.swing.dnd.ClickableRegionStore

mousePressed(MouseEvent) - Method in class org.catacomb.druid.swing.DRadioButton

mousePressed(MouseEvent) - Method in class org.catacomb.druid.swing.DSlider

mousePressed(MouseEvent) - Method in class org.catacomb.druid.swing.DToggleButton

mousePressed(MouseEvent) - Method in class org.catacomb.druid.swing.DTree

mousePressed(MouseEvent) - Method in class org.catacomb.druid.swing.DValueHistory

mousePressed(MouseEvent) - Method in class org.catacomb.graph.gui.Mouse

mousePressed(MouseEvent) - Method in class org.textensor.vis.SceneGraphViewer

mouseRelease(MouseEvent) - Method in class org.catacomb.druid.swing.split.DSplitterBar

mouseReleased(MouseEvent) - Method in class org.catacomb.druid.swing.DCheckboxList

mouseReleased(MouseEvent) - Method in class org.catacomb.druid.swing.DCheckboxTree

mouseReleased(MouseEvent) - Method in class org.catacomb.druid.swing.DChoice

mouseReleased(MouseEvent) - Method in class org.catacomb.druid.swing.DDropCanvas

mouseReleased(MouseEvent) - Method in class org.catacomb.druid.swing.DFillGuage

mouseReleased(MouseEvent) - Method in class org.catacomb.druid.swing.DFloatSlider

mouseReleased(MouseEvent) - Method in class org.catacomb.druid.swing.DList

mouseReleased(MouseEvent) - Method in class org.catacomb.druid.swing.DMouseRelay

mouseReleased(MouseEvent) - Method in class org.catacomb.druid.swing.dnd.ClickableRegionStore

mouseReleased(MouseEvent) - Method in class org.catacomb.druid.swing.DRadioButton

mouseReleased(MouseEvent) - Method in class org.catacomb.druid.swing.DSlider

mouseReleased(MouseEvent) - Method in class org.catacomb.druid.swing.DToggleButton

mouseReleased(MouseEvent) - Method in class org.catacomb.druid.swing.DTree

mouseReleased(MouseEvent) - Method in class org.catacomb.druid.swing.DValueHistory

mouseReleased(MouseEvent) - Method in class org.catacomb.druid.swing.split.SplitterBarMouseListener

mouseReleased(MouseEvent) - Method in class org.catacomb.graph.gui.Mouse

mouseReleased(MouseEvent) - Method in class org.textensor.vis.SceneGraphViewer

MouseSource - Interface in org.catacomb.interlish.structure

MouseUtil - Class in org.catacomb.util

MouseUtil() - Constructor for class org.catacomb.util.MouseUtil

Movable - Interface in org.textensor.stochdiff.geom

movdisplay - Variable in class org.catacomb.graph.gui.MovieDisplay.MDThreadRunner

move(Position) - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

MOVE - Static variable in class org.catacomb.graph.arbor.SegmentGraphVE

MOVE_POINT - Static variable in class org.catacomb.graph.drawing.Shape

moveDrag(IntPosition) - Method in class org.catacomb.druid.swing.DDropCanvas

movePerp(CellPoint, CellPoint, double) - Method in class org.catacomb.numeric.difnet.CellPoint

movePerp(MeshPoint, MeshPoint, double, MeshPoint) - Static method in class org.catacomb.numeric.mesh.Discretizer

movePerp(TreePoint, TreePoint, double) - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

movePoint(ShapePoint, Position, int) - Method in class org.catacomb.graph.drawing.Shape

moveTo(int) - Method in class org.catacomb.druid.swing.DSlider

moveTo(double, double) - Method in class org.catacomb.graph.gui.PickablePoint

moveTo(Position) - Method in class org.catacomb.graph.gui.PickablePoint

moveTo(Position) - Method in class org.catacomb.graph.gui.PickableRegion

moveTo(double, double) - Method in class org.catacomb.graph.gui.PickableRegion

moveTo(double, double, double) - Method in class org.textensor.stochdiff.geom.GPosition

moveTo(double, double, double) - Method in interface org.textensor.stochdiff.geom.Movable

MOVIE - Static variable in class org.catacomb.graph.gui.DataView

movie - Variable in class org.catacomb.graph.gui.SpriteMoviePainter

movieController - Variable in class org.catacomb.druid.gui.base.DruMovieDisplay

MovieController - Interface in org.catacomb.interlish.structure

MovieDisplay - Class in org.catacomb.druid.blocks

MovieDisplay() - Constructor for class org.catacomb.druid.blocks.MovieDisplay

movieDisplay - Variable in class org.catacomb.druid.gui.base.DruMovieDisplay

MovieDisplay - Class in org.catacomb.graph.gui

MovieDisplay(int, int) - Constructor for class org.catacomb.graph.gui.MovieDisplay

movieDisplay - Variable in class org.catacomb.graph.gui.MovieFramePlayer

MovieDisplay.MDThreadRunner - Class in org.catacomb.graph.gui

MovieDisplay.MDThreadRunner(MovieDisplay, File, Logger) - Constructor for class org.catacomb.graph.gui.MovieDisplay.MDThreadRunner

movieFramePlayer - Variable in class org.catacomb.graph.gui.MovieDisplay

MovieFramePlayer - Class in org.catacomb.graph.gui

MovieFramePlayer(MovieDisplay) - Constructor for class org.catacomb.graph.gui.MovieFramePlayer

MovieOperator - Interface in org.catacomb.interlish.structure

moviePaintInstructor - Variable in class org.catacomb.graph.gui.MovieDisplay

MoviePaintInstructor - Interface in org.catacomb.graph.gui

MoviePlayController - Class in org.catacomb.druid.chunk

MoviePlayController() - Constructor for class org.catacomb.druid.chunk.MoviePlayController

movieStateDisplay - Variable in class org.catacomb.graph.gui.MovieDisplay

MovieStateDisplay - Interface in org.catacomb.interlish.structure

mpyBy(double) - Method in class org.catacomb.numeric.math.Matrix

mpyBy(Matrix) - Method in class org.catacomb.numeric.math.Matrix

mpyBy(double) - Method in class org.textensor.stochdiff.numeric.math.Matrix

mpyBy(Matrix) - Method in class org.textensor.stochdiff.numeric.math.Matrix

msk - Static variable in class org.catacomb.movie.gif.ByteAccumulator

MSTest - Class in org.textensor.stochdiff.examples.morphsurf

MSTest() - Constructor for class org.textensor.stochdiff.examples.morphsurf.MSTest

mt - Variable in class org.textensor.stochdiff.numeric.math.MersenneTwister

mti - Variable in class org.textensor.stochdiff.numeric.math.MersenneTwister

mtx - Variable in class org.textensor.stochdiff.geom.GRotation

MULTI - Static variable in class org.catacomb.graph.gui.WorldCanvas

MultiChanneled - Interface in org.catacomb.interlish.structure

multiChoiceLongQuestion(String, String[]) - Static method in class org.catacomb.druid.dialog.Dialoguer

MULTICODE - Static variable in class org.catacomb.druid.load.XMLStore

MultiIDLabelled - Interface in org.catacomb.interlish.structure

multiIndexes - Variable in class org.catacomb.graph.gui.DataView

MultiManifester - Class in org.catacomb.druid.manifest

MultiManifester(String, String) - Constructor for class org.catacomb.druid.manifest.MultiManifester

MultiNamed - Interface in org.catacomb.interlish.structure

multiOrdinate - Variable in class org.catacomb.graph.gui.DataView

MultiPanel - Class in org.catacomb.druid.blocks

MultiPanel() - Constructor for class org.catacomb.druid.blocks.MultiPanel

multiple - Variable in class org.catacomb.druid.blocks.List

multiple - Variable in class org.catacomb.druid.blocks.ScrollingCheckboxList

multiple - Variable in class org.catacomb.druid.blocks.ScrollingList

multiple - Variable in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

multiple - Variable in class org.catacomb.druid.gui.edit.DruListPanel

multiple - Variable in class org.catacomb.druid.swing.DCheckboxList

multiple - Variable in class org.catacomb.druid.swing.DList

multiplyBy(double) - Method in class org.textensor.stochdiff.numeric.math.Matrix

multiplyInto(double[]) - Method in class org.catacomb.numeric.math.Matrix

multiplyInto(double[]) - Method in class org.textensor.stochdiff.numeric.math.Matrix

MultiSprites - Annotation Type in org.catacomb.numeric.data

MultiTimed - Interface in org.catacomb.interlish.structure

multiuplyBy(double) - Method in class org.textensor.stochdiff.numeric.math.Column

MVmultiply(double[][], double[]) - Static method in class org.catacomb.numeric.math.SMatrix

mxxm(double[]) - Method in class org.catacomb.graph.gui.PickableRegion

myBrighter(Color) - Static method in class org.catacomb.druid.swing.RolloverEffect

myBrighter(Color) - Static method in class org.catacomb.graph.gui.RolloverEffect

myBrighter(Color) - Static method in class org.catacomb.util.ColorUtil

myDarker(Color) - Static method in class org.catacomb.druid.swing.RolloverEffect

myDarker(Color) - Static method in class org.catacomb.graph.gui.RolloverEffect

myDarker(Color) - Static method in class org.catacomb.util.ColorUtil

mylog(double) - Method in class org.catacomb.druid.swing.DFloatSlider

mymenu - Variable in class org.catacomb.druid.swing.DPopLabel

mypl - Variable in class org.catacomb.druid.swing.DCheckboxMenuItem

myprint(String) - Method in class org.catacomb.druid.swing.DFrame

myShowMenu() - Method in class org.catacomb.druid.swing.DPopLabel

myStringSort(String[]) - Method in class org.catacomb.druid.swing.DPopLabel

N

n - Variable in class org.catacomb.numeric.math.Matrix

n - Variable in class org.textensor.stochdiff.model.SpecieRef

n - Variable in class org.textensor.stochdiff.numeric.math.Column

n - Variable in class org.textensor.stochdiff.numeric.math.Matrix

N - Static variable in class org.textensor.stochdiff.numeric.math.MersenneTwister

n1 - Variable in class org.catacomb.numeric.math.Matrix

n1 - Variable in class org.textensor.stochdiff.numeric.math.Matrix

n2 - Variable in class org.catacomb.numeric.math.Matrix

n2 - Variable in class org.textensor.stochdiff.numeric.math.Matrix

n_bits - Variable in class org.catacomb.movie.gif.LZWEncoder

n_list - Variable in class org.textensor.stochdiff.numeric.BaseCalc

Namable - Interface in org.catacomb.interlish.structure

name - Variable in class org.catacomb.act.ArrayDeclaration

name - Variable in class org.catacomb.act.EnumOption

name - Variable in class org.catacomb.act.FieldSignature

name - Variable in class org.catacomb.datalish.SpriteData

name - Variable in class org.catacomb.dataview.build.DataSource

name - Variable in class org.catacomb.dataview.build.Dataview

name - Variable in class org.catacomb.druid.blocks.Application

name - Variable in class org.catacomb.druid.blocks.AutonomousDialog

name - Variable in class org.catacomb.druid.blocks.AutonomousPanel

name - Variable in class org.catacomb.druid.blocks.EditorWindow

name - Variable in class org.catacomb.druid.blocks.Insert

name - Variable in class org.catacomb.druid.blocks.TableTree

name - Variable in class org.catacomb.druid.gui.base.DruRoot

name - Variable in class org.catacomb.druid.gui.edit.DruMenu

name - Variable in class org.catacomb.druid.guimodel.Log

name - Variable in class org.catacomb.druid.manifest.DecFile

name - Variable in class org.catacomb.druid.swing.DDialog

name - Variable in class org.catacomb.druid.swing.DFrame

name - Variable in class org.catacomb.druid.util.examples.DemoNode

name - Variable in class org.catacomb.druid.util.examples.TreeItem

name - Variable in class org.catacomb.druid.util.tree.ArrayListNode

name - Variable in class org.catacomb.interlish.content.ColorTable

name - Variable in class org.catacomb.interlish.content.NVPair

name - Variable in class org.catacomb.interlish.version.BuildInfo

name - Variable in class org.catacomb.numeric.data.BlockStack

name - Variable in class org.catacomb.numeric.data.DataItem

name - Variable in class org.catacomb.numeric.data.EventSequence

name - Variable in class org.catacomb.numeric.data.NumDataStore

name - Variable in class org.catacomb.numeric.difnet.CellPoint

name - Variable in class org.catacomb.serial.om.OmAttribute

name - Variable in class org.catacomb.serial.om.OmElement

name - Variable in class org.catacomb.serial.quickxml.Element

name - Variable in class org.catacomb.serial.state.FieldState

name - Variable in class org.catacomb.serial.xml.NamedString

name - Variable in class org.catacomb.serial.xml.NVPair

name - Variable in class org.catacomb.util.ColorDef

name - Variable in class org.textensor.stochdiff.model.OutputSpecie

name - Variable in class org.textensor.stochdiff.model.Reaction

name - Variable in class org.textensor.stochdiff.model.Specie

name - Variable in class org.textensor.stochdiff.neuroml.cable

name - Variable in class org.textensor.stochdiff.neuroml.cell

name - Variable in class org.textensor.stochdiff.neuroml.MetaItem

name - Variable in class org.textensor.stochdiff.neuroml.morphml

name - Variable in class org.textensor.stochdiff.neuroml.MorphMLCableGroup

name - Variable in class org.textensor.stochdiff.neuroml.segment

name - Variable in class org.textensor.stochdiff.numeric.morph.TreePoint

name - Variable in class org.textensor.xml.Attribute

Named - Interface in org.catacomb.interlish.structure

NamedString - Class in org.catacomb.serial.xml

NamedString(String, String) - Constructor for class org.catacomb.serial.xml.NamedString

NameFilter - Interface in org.catacomb.interlish.structure

nameLabel - Variable in class org.catacomb.druid.swing.DListColorRenderer

nameLabel - Variable in class org.catacomb.druid.swing.DListProgressRenderer

nameLabel - Variable in class org.catacomb.druid.swing.DListQuantityRenderer

Namer - Interface in org.catacomb.interlish.structure

names - Variable in class org.catacomb.druid.gui.base.DruPseudoCardPanel

names - Variable in class org.catacomb.numeric.data.VectorSet

NameSet - Annotation Type in org.catacomb.numeric.data

nameSV - Variable in class org.catacomb.druid.dialog.FolderDialogController

nameSV - Variable in class org.catacomb.druid.dialog.NamingDialogController

NameValuePairOnly - Interface in org.catacomb.interlish.structure

namingDialogController - Static variable in class org.catacomb.druid.dialog.Dialoguer

NamingDialogController - Class in org.catacomb.druid.dialog

NamingDialogController() - Constructor for class org.catacomb.druid.dialog.NamingDialogController

NanoMolarity - Class in org.textensor.stochdiff.model

NanoMolarity() - Constructor for class org.textensor.stochdiff.model.NanoMolarity

narrow(String, Object) - Static method in class org.catacomb.interlish.reflect.Narrower

narrow(String, Object) - Static method in class org.textensor.xml.Narrower

Narrower - Class in org.catacomb.interlish.reflect

Narrower() - Constructor for class org.catacomb.interlish.reflect.Narrower

Narrower - Class in org.textensor.xml

Narrower() - Constructor for class org.textensor.xml.Narrower

natt - Variable in class org.catacomb.serial.xml.XMLToken

natt - Variable in class org.textensor.xml.XMLToken

naturalize(byte[]) - Static method in class org.catacomb.serial.jar.CustomJar

nazim - Variable in class org.textensor.stochdiff.disc.CurvedVolumeSlice

nbr - Variable in class org.catacomb.numeric.difnet.CellPoint

nbr - Variable in class org.textensor.stochdiff.numeric.morph.TreePoint

nbrIndexes - Variable in class org.catacomb.graph.arbor.SegmentGraphPoint

nbrs - Variable in class org.catacomb.numeric.mesh.DifMeshPoint

nbuf - Variable in class org.catacomb.druid.build.InfoAggregator

nchar - Variable in class org.catacomb.druid.xtext.base.TextBlock

nChildren() - Method in class org.catacomb.util.StringTree

ncm(int, int) - Method in class org.textensor.stochdiff.numeric.stochastic.BinomialTable

ncmtbl - Variable in class org.textensor.stochdiff.numeric.stochastic.BinomialTable

ncol - Variable in class org.catacomb.dataview.formats.TableDataReader

ncol - Variable in class org.catacomb.numeric.data.DataTable

nColor - Variable in class org.catacomb.interlish.content.ColorTable

ncolumn - Variable in class org.catacomb.druid.blocks.GridPanel

nconnection - Variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

ncprob - Variable in class org.textensor.stochdiff.numeric.stochastic.NGoTable

ncycles - Static variable in class org.catacomb.movie.gif.NeuQuant

ndat - Variable in class org.catacomb.numeric.data.DVector

ndisplay - Variable in class org.catacomb.dataview.DataviewController

NDSAccessor - Class in org.catacomb.numeric.data

NDSAccessor(NumDataStore) - Constructor for class org.catacomb.numeric.data.NDSAccessor

ndsAccessor - Variable in class org.catacomb.numeric.data.NumDataStore

negate() - Method in class org.textensor.stochdiff.numeric.math.Matrix

neighborize(TreePoint, TreePoint) - Static method in class org.textensor.stochdiff.numeric.morph.TreePoint

neighborize() - Method in class org.textensor.stochdiff.numeric.morph.VolumeLine

neighborize() - Method in class org.textensor.stochdiff.numeric.morph.VolumeSlice

neighbors - Variable in class org.textensor.stochdiff.model.MorphPoint

neighbors - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

neighbors - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

neighbors - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

nel - Variable in class org.catacomb.graph.gui.GraphContextMenu

nel - Variable in class org.textensor.stochdiff.inter.SDState

nel - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

nel - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

nel - Variable in class org.textensor.stochdiff.numeric.StaticCalc

nel - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

nel - Variable in class org.textensor.stochdiff.reduce.Reducer

nelement - Variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

nEnvironmentLink - Variable in class org.catacomb.numeric.difnet.model.BasicNetStructure

nerror - Variable in class org.catacomb.serial.xml.XMLReader

nerror - Variable in class org.textensor.xml.XMLReader

netbiasshift - Static variable in class org.catacomb.movie.gif.NeuQuant

NetDiffuser - Class in org.catacomb.numeric.difnet.calc

CcNetDiffuser computs diffusion or sparse or dense networks, with access via the NetDiffuser interface.

NetDiffuser(NetStructure) - Constructor for class org.catacomb.numeric.difnet.calc.NetDiffuser

creates and initialises a CcNetDiffuser for any diffusive nets sharing the same diffusiveNetProperties.

NetFactory - Interface in org.catacomb.numeric.difnet

netindex - Variable in class org.catacomb.movie.gif.NeuQuant

NetMapLink - Class in org.catacomb.numeric.difnet.calc

NetMapLink() - Constructor for class org.catacomb.numeric.difnet.calc.NetMapLink

NetMapNode - Class in org.catacomb.numeric.difnet.calc

NetMapNode() - Constructor for class org.catacomb.numeric.difnet.calc.NetMapNode

NetMath - Class in org.catacomb.numeric.math

NetMath() - Constructor for class org.catacomb.numeric.math.NetMath

netsize - Static variable in class org.catacomb.movie.gif.NeuQuant

NetState - Interface in org.catacomb.numeric.difnet

any network on which a diffusion eqution can be solved.

NetStructure - Interface in org.catacomb.numeric.difnet

properties of a network on which a diffusion eqution can be solved.

NetUtil - Class in org.catacomb.util

NetUtil() - Constructor for class org.catacomb.util.NetUtil

network - Variable in class org.catacomb.movie.gif.NeuQuant

NeuQuant - Class in org.catacomb.movie.gif

NeuQuant(byte[], int, int) - Constructor for class org.catacomb.movie.gif.NeuQuant

NeuroMLBase - Class in org.textensor.stochdiff.neuroml

NeuroMLBase() - Constructor for class org.textensor.stochdiff.neuroml.NeuroMLBase

nevent - Variable in class org.catacomb.numeric.data.EventSequence

never() - Method in class org.catacomb.interlish.content.BasicTouchTime

newBranch(Related, Related) - Method in class org.catacomb.druid.util.tree.RelationTree

newComponentAdded - Variable in class org.catacomb.druid.swing.split.SplitterLayout

newEmptyText() - Static method in class org.catacomb.druid.xtext.base.ContainerBlock

newExternalValue(String) - Method in class org.catacomb.interlish.reflect.ExternInstantiator

newGetSetField(String, String) - Method in class org.catacomb.act.Classdef

newIcon - Variable in class org.catacomb.druid.swing.DListProgressRenderer

newInstance(String) - Method in interface org.catacomb.be.Instantiator

newInstance(String, Object) - Method in interface org.catacomb.be.Instantiator

newInstance(String) - Method in class org.catacomb.interlish.reflect.ClassInstantiator

newInstance(String, Object) - Method in class org.catacomb.interlish.reflect.ClassInstantiator

newInstance(String) - Method in class org.catacomb.interlish.reflect.ReflectionConstructor

newInstance(String) - Method in interface org.catacomb.interlish.structure.Constructor

newInstance(String) - Static method in class org.catacomb.interlish.util.JUtil

newInstance(String) - Method in class org.catacomb.serial.om.ElementConstructor

newInstance(String) - Method in class org.catacomb.serial.xml.VectorConstructor

newInstance() - Static method in class org.catacomb.serial.xml.XMLWriter

newInstance(String) - Method in class org.textensor.xml.ReflectionInstantiator

newInstance() - Static method in class org.textensor.xml.XMLWriter

newItem(Related, Related) - Method in class org.catacomb.druid.util.tree.RelationTree

newItem(String) - Method in class org.textensor.stochdiff.neuroml.meta

newline() - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

newLine() - Static method in class org.catacomb.report.E

newLine() - Static method in class org.textensor.report.E

newlineAfter() - Method in class org.catacomb.druid.xtext.base.TextBlock

NewlineBlock - Class in org.catacomb.druid.xtext.base

NewlineBlock() - Constructor for class org.catacomb.druid.xtext.base.NewlineBlock

newLinkArray(int) - Method in class org.catacomb.numeric.difnet.model.BasicNetFactory

newLinkArray(int) - Method in interface org.catacomb.numeric.difnet.NetFactory

newMethod(String) - Method in class org.catacomb.act.Classdef

newName(String) - Method in class org.catacomb.interlish.content.KeyedList

newNetStructure(StructureNode[], StructureLink[]) - Method in class org.catacomb.numeric.difnet.model.BasicNetFactory

newNetStructure(StructureNode[], StructureLink[]) - Method in interface org.catacomb.numeric.difnet.NetFactory

newNodeArray(int) - Method in class org.catacomb.numeric.difnet.model.BasicNetFactory

newNodeArray(int) - Method in interface org.catacomb.numeric.difnet.NetFactory

newPanelPack(String) - Method in interface org.catacomb.druid.build.PanelFactory

newPanelPack(String) - Method in class org.catacomb.druid.gui.base.DruKitPanel

newPoint(double, double, double, double, int, Object) - Method in interface org.catacomb.interlish.structure.MeshBuilder

newPoint(double, double, double, double, int, Object) - Method in class org.catacomb.numeric.mesh.DifMeshBuilder

newPoint() - Method in class org.catacomb.numeric.mesh.DifMeshPoint

newPoint() - Method in interface org.catacomb.numeric.mesh.MeshPoint

newPointArray(int) - Method in class org.catacomb.numeric.mesh.DifMeshPoint

newPointArray(int) - Method in interface org.catacomb.numeric.mesh.MeshPoint

newPrivateField(String, String) - Method in class org.catacomb.act.Classdef

newPublicField(String, String) - Method in class org.catacomb.act.Classdef

newReadMethod(String, String, String) - Method in class org.catacomb.act.Classdef

newReceiveMethod(String, String) - Method in class org.catacomb.act.Classdef

newReflectableField(String, String) - Method in class org.catacomb.act.Classdef

newResource(Object) - Method in interface org.catacomb.interlish.structure.ResourceNotificand

newSendMethod(String, String) - Method in class org.catacomb.act.Classdef

newShowMethod(String, String, String) - Method in class org.catacomb.act.Classdef

newSourceFile(File, File) - Method in class org.catacomb.druid.load.DruidContentLoader

newSourceFile(File, File) - Method in class org.catacomb.druid.load.XMLStore

newSourceFile(File, File) - Method in interface org.catacomb.interlish.service.ContentLoader

newState(String) - Method in class org.catacomb.druid.swing.DFrame

newState() - Method in class org.catacomb.numeric.difnet.model.BasicNetStructure

makes a new net according to these properties.

newState(BasicStateNode, BasicStateNode) - Method in class org.catacomb.numeric.difnet.model.BasicStructureLink

newState() - Method in class org.catacomb.numeric.difnet.model.BasicStructureNode

newState() - Method in interface org.catacomb.numeric.difnet.NetStructure

newStructureLink() - Method in class org.catacomb.numeric.difnet.model.BasicNetFactory

newStructureLink() - Method in interface org.catacomb.numeric.difnet.NetFactory

newStructureNode() - Method in class org.catacomb.numeric.difnet.model.BasicNetFactory

newStructureNode() - Method in interface org.catacomb.numeric.difnet.NetFactory

newTextAction - Variable in class org.catacomb.druid.gui.base.DruInfoPanel

newTextDrag(String, IntPosition, Object) - Method in class org.catacomb.druid.swing.DDropCanvas

newValue(Object) - Method in class org.catacomb.druid.market.ConsumerAgent

newValue(Object) - Method in interface org.catacomb.interlish.structure.Dependent

newViewName() - Method in class org.catacomb.graph.gui.ViewSet

next() - Method in class org.catacomb.druid.xtext.base.Block

nextBlock - Variable in class org.catacomb.druid.xtext.base.Block

nextBoardNo - Static variable in class org.catacomb.druid.market.HookupBoard

nextCard() - Method in class org.catacomb.druid.gui.base.DruCardPanel

nextCard() - Method in class org.catacomb.druid.gui.base.DruPseudoCardPanel

nextCard() - Method in class org.catacomb.druid.swing.DCardPanel

nextCard() - Method in class org.catacomb.druid.swing.DInfoArea

nextCard() - Method in class org.catacomb.druid.swing.DScrollablePanel

nextCard() - Method in class org.catacomb.druid.swing.DToolablePanel

nextDouble(StringTokenizer) - Method in class org.catacomb.dataview.formats.SWCDisplay

nextElt(int) - Method in class org.catacomb.movie.gif.ByteAccumulator

nextFloat(StreamTokenizer) - Method in class org.textensor.vis.ElementReader

nextInt(StringTokenizer) - Method in class org.catacomb.dataview.formats.SWCDisplay

nextInt(StreamTokenizer) - Method in class org.textensor.vis.ElementReader

nextIsLinked - Variable in class org.catacomb.druid.xtext.canvas.TextBoard

nextPixel() - Method in class org.catacomb.movie.gif.LZWEncoder

nextRandom() - Static method in class org.catacomb.numeric.math.Random

nextRandom() - Static method in class org.textensor.stochdiff.numeric.math.NRRandom

nextState() - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

We rotate between NOT_SELECTED, SELECTED and DONT_CARE.

nextTextBlock() - Method in class org.catacomb.druid.xtext.base.TextBlock

nextTextDoc() - Method in class org.catacomb.druid.xtext.base.DocStore

nextToken() - Method in class org.catacomb.serial.xml.XMLTokenizer

nextToken() - Method in class org.textensor.xml.XMLTokenizer

nextValue() - Method in class org.catacomb.numeric.function.AR1Noise

nextValue(double, double, double) - Static method in class org.catacomb.numeric.function.AR1Noise

nFrame - Variable in class org.catacomb.graph.gui.MovieDisplay

nGo(int, double, double) - Method in class org.textensor.stochdiff.numeric.stochastic.DiscretePStepGenerator

nGo(int, double) - Method in class org.textensor.stochdiff.numeric.stochastic.FixedPStepGenerator

nGo(int, double, double) - Method in class org.textensor.stochdiff.numeric.stochastic.InterpolatingStepGenerator

nGo(double) - Method in class org.textensor.stochdiff.numeric.stochastic.NGoTable

nGo(int, double, double) - Method in class org.textensor.stochdiff.numeric.stochastic.StepGenerator

nGoBS(double) - Method in class org.textensor.stochdiff.numeric.stochastic.NGoTable

nGoSeq(double) - Method in class org.textensor.stochdiff.numeric.stochastic.NGoTable

NGoTable - Class in org.textensor.stochdiff.numeric.stochastic

NGoTable(int, double, BaseCalc.distribution_t) - Constructor for class org.textensor.stochdiff.numeric.stochastic.NGoTable

nHandler - Variable in class org.catacomb.graph.gui.Mouse

nim - Variable in class org.catacomb.druid.gui.base.DruImageLabelPanel

ninfo - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

ninfo - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

ninjected - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

ninjected - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

nitem - Variable in class org.catacomb.numeric.data.IntegerArray

nl - Variable in class org.textensor.stochdiff.numeric.morph.VolumeLine

nlabellee - Variable in class org.catacomb.graph.gui.Labeller

nline - Variable in class org.catacomb.druid.swing.DList

nlines(StringBuffer) - Method in class org.catacomb.act.Classdef

nlistener - Variable in class org.catacomb.druid.gui.base.DruPseudoCardPanel

nlog - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

NM_PER_PARTICLE_PUV - Static variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

nmax - Variable in class org.catacomb.druid.swing.DSlider

NMAX - Static variable in class org.textensor.stochdiff.numeric.stochastic.BinomialTable

NMAX_STOCHASTIC - Static variable in class org.textensor.stochdiff.numeric.stochastic.StepGenerator

nnbr - Variable in class org.catacomb.numeric.difnet.CellPoint

nnbr - Variable in class org.catacomb.numeric.mesh.DifMeshPoint

nnbr - Variable in class org.textensor.stochdiff.numeric.morph.TreePoint

nngowarn - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

NO - Static variable in class org.catacomb.druid.swing.DFrame

NO - Static variable in interface org.catacomb.interlish.structure.NameFilter

no_discards - Variable in class org.catacomb.util.Diff

When set to true, the algorithm returns a guarranteed minimal set of changes.

node - Variable in class org.catacomb.numeric.difnet.calc.OrderedNetMap

nodeA - Variable in class org.catacomb.numeric.difnet.calc.NetMapLink

nodeA - Variable in class org.catacomb.numeric.difnet.model.BasicStateLink

nodeA - Variable in class org.catacomb.numeric.difnet.model.BasicStructureLink

nodeAddedUnder(TreeNode, TreeNode) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

nodeAddedUnder(TreeNode, TreeNode) - Method in interface org.catacomb.interlish.structure.TreeChangeReporter

nodeAddedUnder(TreeNode, TreeNode) - Method in class org.catacomb.numeric.data.NumDataStore

nodeB - Variable in class org.catacomb.numeric.difnet.calc.NetMapLink

nodeB - Variable in class org.catacomb.numeric.difnet.model.BasicStateLink

nodeB - Variable in class org.catacomb.numeric.difnet.model.BasicStructureLink

nodeRemoved(TreeNode, TreeNode) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

nodeRemoved(TreeNode, TreeNode) - Method in interface org.catacomb.interlish.structure.TreeChangeReporter

nodeRemoved(TreeNode, TreeNode) - Method in class org.catacomb.numeric.data.NumDataStore

nodes - Variable in class org.catacomb.dataview.formats.SWCDisplay

nodes - Variable in class org.catacomb.numeric.difnet.model.BasicNetState

nodes - Variable in class org.catacomb.numeric.difnet.model.BasicNetStructure

nondiscarded_lines - Variable in class org.catacomb.util.Diff.file_data

Total number of nondiscarded lines.

NONE - Static variable in class org.catacomb.druid.swing.BorderUtil

NONE - Static variable in class org.catacomb.druid.swing.DFloatSlider

NONE - Static variable in class org.catacomb.druid.swing.DSlider

NONE - Static variable in class org.catacomb.druid.swing.RolloverEffect

NONE - Static variable in class org.catacomb.graph.drawing.ShapeSymmetry

NONE - Static variable in class org.catacomb.graph.gui.MouseHandler

NONE - Static variable in class org.catacomb.graph.gui.RolloverEffect

NONE - Static variable in class org.catacomb.serial.xml.XMLToken

NONE - Static variable in class org.textensor.vis.SceneGraphViewer

NONE - Static variable in class org.textensor.xml.XMLToken

NONE_STRING - Static variable in class org.catacomb.interlish.structure.SpecialStrings

nonPrimitive(Object) - Method in class org.catacomb.interlish.reflect.ReflectionConstructor

nonPrimitive(Object) - Method in class org.textensor.xml.ReflectionInstantiator

nonTrivialComponents(String[]) - Static method in class org.catacomb.util.StringUtil

NORMAL - Static variable in class org.catacomb.graph.gui.BoxSelectionHandler

NORMAL - Static variable in class org.catacomb.graph.gui.ClickZoomHandler

NORMAL - Static variable in class org.catacomb.graph.gui.PanHandler

NORMAL - Static variable in class org.catacomb.graph.gui.RollHandler

NORMAL - Static variable in class org.catacomb.graph.gui.TurntableHandler

NORMAL_ORDER - Static variable in class org.catacomb.druid.gui.edit.DruListPanel

normalBorder - Variable in class org.catacomb.druid.swing.RolloverEffect

normalBorder - Variable in class org.catacomb.graph.gui.RolloverEffect

normalCursor() - Method in class org.catacomb.druid.gui.base.DruFrame

normalStroke - Variable in class org.catacomb.graph.gui.Painter

normalTransform - Variable in class org.catacomb.graph.gui.Painter

normalTransform - Variable in class org.catacomb.graph.gui.YAxisCanvas

norms - Variable in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

norms - Variable in class org.textensor.vis.VolElt

North - Class in org.catacomb.druid.blocks

North() - Constructor for class org.catacomb.druid.blocks.North

NOT_SELECTED - Static variable in class org.catacomb.druid.swing.TristateCheckBox

notes - Variable in class org.textensor.stochdiff.neuroml.cell

notificand - Variable in class org.catacomb.druid.guimodel.Log

Notificand - Interface in org.catacomb.interlish.structure

notifyAllIfChanged(Supplier) - Method in class org.catacomb.druid.market.SupplyAgent

notifyAllIfChanged(Supplier) - Method in class org.catacomb.druid.market.SupplyClerk

notifyAppearanceChange() - Method in class org.catacomb.druid.xtext.base.DMItem

notifyChange(Object) - Method in class org.catacomb.druid.swing.dnd.RegionBoard

notifyChange() - Method in class org.catacomb.druid.swing.DSimpleSlider

notifyChange() - Method in class org.catacomb.druid.swing.DSlider

notifyListeners(String) - Method in class org.catacomb.druid.gui.base.DruPseudoCardPanel

notifyObservers() - Method in class org.catacomb.graph.drawing.Shape

notifyObservers() - Method in interface org.catacomb.interlish.structure.RowPeer

notifyObservers() - Method in interface org.catacomb.interlish.structure.TablePeer

notifyRangeChange() - Method in class org.catacomb.graph.gui.WorldTransform

notifyRangeChange(int) - Method in class org.catacomb.graph.gui.WorldTransform

notifyValueChange() - Method in class org.catacomb.druid.swing.DFloat

notifyValueChange() - Method in class org.catacomb.druid.swing.DInt

now() - Method in class org.catacomb.interlish.content.BasicTouchTime

now() - Method in interface org.catacomb.interlish.structure.ChangeTime

now() - Method in interface org.catacomb.interlish.structure.TouchTime

noXdata - Variable in class org.catacomb.datalish.Box

noYdata - Variable in class org.catacomb.datalish.Box

NP - Static variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

NP - Static variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

npainter - Variable in class org.catacomb.dataview.DataviewController

npanel - Variable in class org.catacomb.druid.gui.base.DruPseudoCardPanel

nparticle - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

nparticle - Variable in class org.textensor.stochdiff.numeric.stochastic.NGoTable

nparticle - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

npcache - Variable in class org.catacomb.numeric.data.AnimSlice

npcache - Variable in class org.catacomb.numeric.data.DDSlice

npcache - Variable in class org.catacomb.numeric.data.DDSubSlice

npcache - Variable in class org.catacomb.numeric.data.DSlice

npend - Variable in class org.catacomb.movie.gif.ByteAccumulator

npkg - Variable in class org.catacomb.interlish.reflect.ReflectionConstructor

npkg - Variable in class org.textensor.xml.ReflectionInstantiator

npoint - Variable in class org.catacomb.graph.gui.PickStore

npoint - Variable in class org.catacomb.numeric.data.DoubleArray

npoint - Variable in class org.catacomb.numeric.data.VectorSet

npoint - Variable in class org.catacomb.numeric.mesh.DifMeshBuilder

nppts - Variable in class org.textensor.stochdiff.numeric.stochastic.InterpolatingStepGenerator

npts - Variable in class org.catacomb.dataview.build.Line

nr(double) - Method in class org.textensor.vis.IcingPoint

nRangeListener - Variable in class org.catacomb.graph.gui.WorldTransform

nreaction - Variable in class org.textensor.stochdiff.numeric.chem.ReactionTable

nreaction - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

nreaction - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

nrec - Variable in class org.catacomb.numeric.difnet.model.BasicNetRecorder

nreg - Variable in class org.catacomb.druid.swing.dnd.RegionStore

nreg - Variable in class org.textensor.stochdiff.numeric.morph.VolumeLine

nregion - Variable in class org.catacomb.graph.gui.PickStore

nrep - Variable in class org.catacomb.numeric.data.NumDataStore

nrep - Static variable in class org.catacomb.report.E

nrep - Static variable in class org.textensor.report.E

nrow - Variable in class org.catacomb.druid.blocks.CheckboxList

nrow - Variable in class org.catacomb.druid.blocks.GridPanel

nrow - Variable in class org.catacomb.druid.blocks.List

nrow - Variable in class org.catacomb.druid.blocks.ScrollingCheckboxList

nrow - Variable in class org.catacomb.druid.blocks.ScrollingList

nrow - Variable in class org.catacomb.druid.blocks.ToggleList

nrow - Variable in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

nrow - Variable in class org.catacomb.druid.gui.edit.DruListPanel

nrow - Variable in class org.catacomb.druid.gui.edit.DruToggleListPanel

nrow - Variable in class org.catacomb.numeric.data.DataTable

NRRandom - Class in org.textensor.stochdiff.numeric.math

NRRandom() - Constructor for class org.textensor.stochdiff.numeric.math.NRRandom

nshowing - Variable in class org.textensor.vis.SceneGraphViewer

nsl - Variable in class org.textensor.stochdiff.numeric.morph.VolumeLine

nsn - Variable in class org.catacomb.graph.gui.DisplayStrokes

nspec - Variable in class org.textensor.stochdiff.inter.SDState

nspec - Variable in class org.textensor.stochdiff.numeric.chem.StimulationTable

nspec - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

nspec - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

nspec - Variable in class org.textensor.stochdiff.numeric.StaticCalc

nspec - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

nspec - Variable in class org.textensor.stochdiff.reduce.Reducer

nspecie - Variable in class org.textensor.stochdiff.numeric.chem.ReactionTable

nspecie - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

nspecie - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

nstate - Variable in class org.catacomb.druid.gui.edit.IconSwitcher

nstim - Variable in class org.textensor.stochdiff.numeric.chem.StimulationTable

ntab - Variable in class org.catacomb.druid.swing.DTabbedPane

ntick - Variable in class org.catacomb.graph.gui.HoverTimer

ntick - Variable in class org.catacomb.graph.gui.XAxisCanvas

ntick - Variable in class org.catacomb.graph.gui.YAxisCanvas

ntok(StreamTokenizer) - Method in class org.catacomb.serial.xml.XMLTokenizer

ntok(StreamTokenizer) - Method in class org.textensor.xml.XMLTokenizer

ntv - Variable in class org.catacomb.numeric.function.HoldLastScalarFunction

nudge(double) - Method in class org.catacomb.druid.swing.DFloatSlider

nudgeLeft() - Method in class org.catacomb.druid.swing.DFloatSlider

nudgeLeft() - Method in class org.catacomb.druid.swing.DSlider

nudgeRight() - Method in class org.catacomb.druid.swing.DFloatSlider

nudgeRight() - Method in class org.catacomb.druid.swing.DSlider

num - Variable in class org.catacomb.interlish.version.BuildInfo

NUMBER - Static variable in class org.catacomb.serial.xml.XMLToken

number - Variable in class org.textensor.stochdiff.model.NumberDensity

NUMBER - Static variable in class org.textensor.xml.XMLToken

NumberDensity - Class in org.textensor.stochdiff.model

NumberDensity() - Constructor for class org.textensor.stochdiff.model.NumberDensity

NumDataItem - Interface in org.catacomb.numeric.data

NumDataSet - Class in org.catacomb.numeric.data

NumDataSet() - Constructor for class org.catacomb.numeric.data.NumDataSet

NumDataSet(String) - Constructor for class org.catacomb.numeric.data.NumDataSet

NumDataSetFactory - Class in org.catacomb.numeric.data

NumDataSetFactory() - Constructor for class org.catacomb.numeric.data.NumDataSetFactory

NumDataStore - Class in org.catacomb.numeric.data

NumDataStore(String) - Constructor for class org.catacomb.numeric.data.NumDataStore

numderivs(Column, Column, double) - Method in class org.textensor.stochdiff.numeric.pool.ImplicitEulerPoolCalc

NumericContentReader - Class in org.catacomb.dataview.read

NumericContentReader(byte[], FUImportContext) - Constructor for class org.catacomb.dataview.read.NumericContentReader

NumericContentType - Class in org.catacomb.dataview.read

NumericContentType() - Constructor for class org.catacomb.dataview.read.NumericContentType

NumericDataRW - Class in org.catacomb.dataview.read

NumericDataRW() - Constructor for class org.catacomb.dataview.read.NumericDataRW

numTrains - Variable in class org.textensor.stochdiff.model.InjectionStim

NumUtil - Class in org.catacomb.util

NumUtil() - Constructor for class org.catacomb.util.NumUtil

NumVector - Interface in org.catacomb.numeric.data

NumVectorSet - Interface in org.catacomb.numeric.data

nv - Variable in class org.textensor.stochdiff.reduce.Reducer

nvar - Variable in class org.catacomb.dataview.formats.MeshDataReader

nvec - Variable in class org.catacomb.numeric.data.VectorSet

NVPair - Class in org.catacomb.interlish.content

NVPair(String, double, String) - Constructor for class org.catacomb.interlish.content.NVPair

NVPair - Class in org.catacomb.serial.xml

NVPair(String, Object) - Constructor for class org.catacomb.serial.xml.NVPair

NVPair(String) - Constructor for class org.catacomb.serial.xml.NVPair

nw - Variable in class org.catacomb.graph.gui.DisplayStrokes

nwarn - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

nwarn - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

nx - Variable in class org.catacomb.dataview.PointsPlotElement

nx - Variable in class org.textensor.stochdiff.numeric.morph.VolumeSlice

ny - Variable in class org.catacomb.dataview.PointsPlotElement

ny - Variable in class org.textensor.stochdiff.numeric.morph.VolumeSlice

O

OBJECT - Static variable in class org.catacomb.numeric.data.DataSlice

object - Variable in class org.textensor.vis.RunBuilder

object - Variable in class org.textensor.vis.RunDecorator

ObjectAccessor - Class in org.catacomb.interlish.reflect

ObjectAccessor(Object) - Constructor for class org.catacomb.interlish.reflect.ObjectAccessor

ObjectBuilder - Class in org.catacomb.interlish.reflect

ObjectBuilder(Constructor) - Constructor for class org.catacomb.interlish.reflect.ObjectBuilder

ObjectUtil - Class in org.catacomb.util

ObjectUtil() - Constructor for class org.catacomb.util.ObjectUtil

objectValue - Variable in class org.catacomb.numeric.data.DataSlice

ObjectValueSettable - Interface in org.catacomb.interlish.structure

ObjectViewer - Interface in org.catacomb.interlish.structure

Observable - Interface in org.catacomb.interlish.structure

Observer - Interface in org.catacomb.interlish.structure

ocf - Variable in class org.catacomb.datalish.SpritePart

offIcon - Variable in class org.catacomb.druid.swing.DToggleButton

offImage - Variable in class org.catacomb.druid.blocks.ToggleButton

offsetChildren - Variable in class org.textensor.stochdiff.numeric.morph.TreePoint

offsetNeighbors - Variable in class org.textensor.stochdiff.model.MorphPoint

OK() - Method in class org.catacomb.druid.dialog.CheckSeenDialogController

OK() - Method in class org.catacomb.druid.dialog.FolderDialogController

OK() - Method in class org.catacomb.druid.dialog.MessageDialogController

OK() - Method in class org.catacomb.druid.dialog.NamingDialogController

oldParseColor(String) - Static method in class org.catacomb.util.ColorUtil

OmAttribute - Class in org.catacomb.serial.om

OmAttribute(String, String) - Constructor for class org.catacomb.serial.om.OmAttribute

OmAttribute(String, boolean) - Constructor for class org.catacomb.serial.om.OmAttribute

OmElement - Class in org.catacomb.serial.om

OmElement() - Constructor for class org.catacomb.serial.om.OmElement

OmElement(String) - Constructor for class org.catacomb.serial.om.OmElement

OmElement(ArrayList<Attribute>, ArrayList<Element>) - Constructor for class org.catacomb.serial.om.OmElement

OmElementFactory - Class in org.catacomb.serial.om

OmElementFactory() - Constructor for class org.catacomb.serial.om.OmElementFactory

OmElementizer - Class in org.catacomb.serial

OmElementizer() - Constructor for class org.catacomb.serial.OmElementizer

OmElementizer(SerializationContext) - Constructor for class org.catacomb.serial.OmElementizer

OmFileReader - Class in org.catacomb.serial.om

OmFileReader(File) - Constructor for class org.catacomb.serial.om.OmFileReader

OmFileWriter - Class in org.catacomb.serial.om

OmFileWriter(File) - Constructor for class org.catacomb.serial.om.OmFileWriter

OmReader - Class in org.catacomb.serial.om

OmReader() - Constructor for class org.catacomb.serial.om.OmReader

OmWriter - Class in org.catacomb.serial.om

OmWriter() - Constructor for class org.catacomb.serial.om.OmWriter

on - Variable in class org.textensor.stochdiff.model.EndPoint

oneLineWarning(String) - Static method in class org.catacomb.report.E

oneLineWarning(String) - Static method in class org.textensor.report.E

onIcon - Variable in class org.catacomb.druid.swing.DToggleButton

onImage - Variable in class org.catacomb.druid.blocks.ToggleButton

onset - Variable in class org.textensor.stochdiff.model.InjectionStim

onset - Variable in class org.textensor.stochdiff.numeric.chem.StimulationTable

open() - Method in class org.catacomb.datalish.SpritePart

open() - Method in class org.catacomb.dataview.gui.CCVizController

open(File) - Method in class org.catacomb.dataview.gui.CCVizController

open() - Method in class org.catacomb.dataview.gui.DViewController

open(File) - Method in class org.catacomb.dataview.gui.DViewController

open() - Method in class org.catacomb.druid.gui.base.DruAutonomousDialog

open() - Method in class org.catacomb.druid.gui.base.DruDialog

open() - Method in class org.catacomb.druid.swing.DDialog

OPEN - Static variable in class org.catacomb.graph.drawing.FixedDrawingComponent

OPEN - Static variable in class org.catacomb.interlish.content.Polypoint

OPEN - Static variable in class org.catacomb.interlish.content.RShape

open() - Method in interface org.catacomb.interlish.structure.Openable

OPEN - Static variable in class org.catacomb.serial.xml.XMLToken

OPEN - Static variable in class org.textensor.xml.XMLToken

Openable - Interface in org.catacomb.interlish.structure

OPENCLOSE - Static variable in class org.catacomb.serial.xml.XMLToken

OPENCLOSE - Static variable in class org.textensor.xml.XMLToken

openIcon - Static variable in class org.catacomb.druid.swing.TCRenderer

oppositeNeighbor(TreePoint) - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

Option - Class in org.catacomb.druid.blocks

Option() - Constructor for class org.catacomb.druid.blocks.Option

optionalIncrementLog(int, String) - Method in class org.catacomb.druid.dialog.ProgressLogDialogController

optionalIncrementLog(int, String) - Method in interface org.catacomb.interlish.report.Logger

optionalIncrementLog(int, String) - Method in class org.catacomb.interlish.report.PrintLogger

options - Variable in class org.catacomb.druid.blocks.Choice

options - Variable in class org.catacomb.druid.blocks.RadioButtons

options - Variable in class org.catacomb.druid.blocks.TableTree

options - Variable in class org.catacomb.druid.swing.DChoice

options - Variable in class org.catacomb.druid.swing.DPopLabel

options - Variable in class org.catacomb.druid.swing.DRadioButtons

optionsAL - Variable in class org.catacomb.druid.blocks.Choice

OptionsSource - Interface in org.catacomb.druid.event

optionsSource - Variable in class org.catacomb.druid.swing.DChoice

OptionsUser - Interface in org.catacomb.interlish.structure

ORANGE - Static variable in class org.catacomb.numeric.phys.Phys

order - Variable in class org.catacomb.druid.blocks.List

order - Variable in class org.catacomb.druid.blocks.ScrollingCheckboxList

order - Variable in class org.catacomb.druid.blocks.ScrollingList

order - Variable in class org.catacomb.druid.gui.edit.DruListPanel

orderedNetMap - Variable in class org.catacomb.numeric.difnet.calc.NetDiffuser

OrderedNetMap - Class in org.catacomb.numeric.difnet.calc

OrderedNetMap - remapping of the geometry of a DiffusiveNet, ready for diffusion calculations.

OrderedNetMap(NetStructure) - Constructor for class org.catacomb.numeric.difnet.calc.OrderedNetMap

ordinates - Variable in class org.catacomb.graph.gui.DataView

oref - Variable in class org.catacomb.graph.gui.PickableRegion

org.catacomb - package org.catacomb

org.catacomb.act - package org.catacomb.act

org.catacomb.be - package org.catacomb.be

org.catacomb.datalish - package org.catacomb.datalish

org.catacomb.datalish.array - package org.catacomb.datalish.array

org.catacomb.dataview - package org.catacomb.dataview

org.catacomb.dataview.build - package org.catacomb.dataview.build

org.catacomb.dataview.demo - package org.catacomb.dataview.demo

org.catacomb.dataview.display - package org.catacomb.dataview.display

org.catacomb.dataview.formats - package org.catacomb.dataview.formats

org.catacomb.dataview.gui - package org.catacomb.dataview.gui

org.catacomb.dataview.model - package org.catacomb.dataview.model

org.catacomb.dataview.read - package org.catacomb.dataview.read

org.catacomb.dataview.test - package org.catacomb.dataview.test

org.catacomb.druid.blocks - package org.catacomb.druid.blocks

org.catacomb.druid.build - package org.catacomb.druid.build

org.catacomb.druid.chunk - package org.catacomb.druid.chunk

org.catacomb.druid.color - package org.catacomb.druid.color

org.catacomb.druid.dialog - package org.catacomb.druid.dialog

org.catacomb.druid.event - package org.catacomb.druid.event

org.catacomb.druid.gui.base - package org.catacomb.druid.gui.base

org.catacomb.druid.gui.edit - package org.catacomb.druid.gui.edit

org.catacomb.druid.guimodel - package org.catacomb.druid.guimodel

org.catacomb.druid.load - package org.catacomb.druid.load

org.catacomb.druid.manifest - package org.catacomb.druid.manifest

org.catacomb.druid.market - package org.catacomb.druid.market

org.catacomb.druid.swing - package org.catacomb.druid.swing

org.catacomb.druid.swing.dnd - package org.catacomb.druid.swing.dnd

org.catacomb.druid.swing.laf - package org.catacomb.druid.swing.laf

org.catacomb.druid.swing.split - package org.catacomb.druid.swing.split

org.catacomb.druid.swing.ui - package org.catacomb.druid.swing.ui

org.catacomb.druid.util - package org.catacomb.druid.util

org.catacomb.druid.util.ctrl - package org.catacomb.druid.util.ctrl

org.catacomb.druid.util.examples - package org.catacomb.druid.util.examples

org.catacomb.druid.util.tree - package org.catacomb.druid.util.tree

org.catacomb.druid.xtext - package org.catacomb.druid.xtext

org.catacomb.druid.xtext.base - package org.catacomb.druid.xtext.base

org.catacomb.druid.xtext.canvas - package org.catacomb.druid.xtext.canvas

org.catacomb.druid.xtext.data - package org.catacomb.druid.xtext.data

org.catacomb.druid.xtext.edit - package org.catacomb.druid.xtext.edit

org.catacomb.druid.xtext.parse - package org.catacomb.druid.xtext.parse

org.catacomb.geom - package org.catacomb.geom

org.catacomb.graph.arbor - package org.catacomb.graph.arbor

org.catacomb.graph.drawing - package org.catacomb.graph.drawing

org.catacomb.graph.gui - package org.catacomb.graph.gui

org.catacomb.icon - package org.catacomb.icon

org.catacomb.icon.images - package org.catacomb.icon.images

org.catacomb.icon.splash - package org.catacomb.icon.splash

org.catacomb.interlish.annotation - package org.catacomb.interlish.annotation

org.catacomb.interlish.content - package org.catacomb.interlish.content

org.catacomb.interlish.interact - package org.catacomb.interlish.interact

org.catacomb.interlish.lang - package org.catacomb.interlish.lang

org.catacomb.interlish.reflect - package org.catacomb.interlish.reflect

org.catacomb.interlish.report - package org.catacomb.interlish.report

org.catacomb.interlish.resource - package org.catacomb.interlish.resource

org.catacomb.interlish.service - package org.catacomb.interlish.service

org.catacomb.interlish.structure - package org.catacomb.interlish.structure

org.catacomb.interlish.util - package org.catacomb.interlish.util

org.catacomb.interlish.version - package org.catacomb.interlish.version

org.catacomb.movie.gif - package org.catacomb.movie.gif

org.catacomb.numeric.array - package org.catacomb.numeric.array

org.catacomb.numeric.data - package org.catacomb.numeric.data

org.catacomb.numeric.difnet - package org.catacomb.numeric.difnet

org.catacomb.numeric.difnet.calc - package org.catacomb.numeric.difnet.calc

org.catacomb.numeric.difnet.model - package org.catacomb.numeric.difnet.model

org.catacomb.numeric.function - package org.catacomb.numeric.function

org.catacomb.numeric.geom - package org.catacomb.numeric.geom

org.catacomb.numeric.math - package org.catacomb.numeric.math

org.catacomb.numeric.mesh - package org.catacomb.numeric.mesh

org.catacomb.numeric.phys - package org.catacomb.numeric.phys

org.catacomb.numeric.run - package org.catacomb.numeric.run

org.catacomb.report - package org.catacomb.report

org.catacomb.serial - package org.catacomb.serial

org.catacomb.serial.jar - package org.catacomb.serial.jar

org.catacomb.serial.om - package org.catacomb.serial.om

org.catacomb.serial.quickxml - package org.catacomb.serial.quickxml

org.catacomb.serial.state - package org.catacomb.serial.state

org.catacomb.serial.xml - package org.catacomb.serial.xml

org.catacomb.util - package org.catacomb.util

org.catacomb.xdoc - package org.catacomb.xdoc

org.textensor.report - package org.textensor.report

org.textensor.stochdiff - package org.textensor.stochdiff

org.textensor.stochdiff.disc - package org.textensor.stochdiff.disc

org.textensor.stochdiff.examples.branch - package org.textensor.stochdiff.examples.branch

org.textensor.stochdiff.examples.ictest - package org.textensor.stochdiff.examples.ictest

org.textensor.stochdiff.examples.morphsurf - package org.textensor.stochdiff.examples.morphsurf

org.textensor.stochdiff.examples.morphtest - package org.textensor.stochdiff.examples.morphtest

org.textensor.stochdiff.examples.NOEPAC - package org.textensor.stochdiff.examples.NOEPAC

org.textensor.stochdiff.examples.plane - package org.textensor.stochdiff.examples.plane

org.textensor.stochdiff.examples.regions - package org.textensor.stochdiff.examples.regions

org.textensor.stochdiff.examples.restart - package org.textensor.stochdiff.examples.restart

org.textensor.stochdiff.examples.smoothvolume - package org.textensor.stochdiff.examples.smoothvolume

org.textensor.stochdiff.examples.volume - package org.textensor.stochdiff.examples.volume

org.textensor.stochdiff.geom - package org.textensor.stochdiff.geom

org.textensor.stochdiff.inter - package org.textensor.stochdiff.inter

org.textensor.stochdiff.model - package org.textensor.stochdiff.model

org.textensor.stochdiff.neuroml - package org.textensor.stochdiff.neuroml

org.textensor.stochdiff.numeric - package org.textensor.stochdiff.numeric

org.textensor.stochdiff.numeric.chem - package org.textensor.stochdiff.numeric.chem

org.textensor.stochdiff.numeric.grid - package org.textensor.stochdiff.numeric.grid

org.textensor.stochdiff.numeric.math - package org.textensor.stochdiff.numeric.math

org.textensor.stochdiff.numeric.morph - package org.textensor.stochdiff.numeric.morph

org.textensor.stochdiff.numeric.pool - package org.textensor.stochdiff.numeric.pool

org.textensor.stochdiff.numeric.stochastic - package org.textensor.stochdiff.numeric.stochastic

org.textensor.stochdiff.numeric.tmp - package org.textensor.stochdiff.numeric.tmp

org.textensor.stochdiff.phys - package org.textensor.stochdiff.phys

org.textensor.stochdiff.reduce - package org.textensor.stochdiff.reduce

org.textensor.util - package org.textensor.util

org.textensor.vis - package org.textensor.vis

org.textensor.xml - package org.textensor.xml

orientAC(TreePoint, TreePoint[]) - Static method in class org.textensor.stochdiff.disc.TreeUtil

orientation - Variable in class org.catacomb.druid.swing.split.DSplitterBar

orientOneAC(TreePoint) - Static method in class org.textensor.stochdiff.disc.TreeUtil

originalBounds - Variable in class org.catacomb.druid.swing.split.DSplitterBar

other - Variable in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

OUT - Static variable in class org.catacomb.graph.gui.ClickZoomHandler

OUT - Static variable in class org.catacomb.graph.gui.MouseHandler

out - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

outfile - Variable in class org.catacomb.util.DiffPrint.Base

outPoints - Variable in class org.textensor.stochdiff.disc.SegmentSlicer

OUTPUT - Static variable in interface org.catacomb.interlish.structure.Plug

output(int, OutputStream) - Method in class org.catacomb.movie.gif.LZWEncoder

output - Variable in class org.textensor.stochdiff.model.SDRun

outputFile - Variable in class org.textensor.stochdiff.ResultWriter

outputInterval - Variable in class org.textensor.stochdiff.model.SDRun

outputQuantity - Variable in class org.textensor.stochdiff.model.SDRun

OutputScheme - Class in org.textensor.stochdiff.model

OutputScheme() - Constructor for class org.textensor.stochdiff.model.OutputScheme

outputScheme - Variable in class org.textensor.stochdiff.model.SDRun

outputSchemeFile - Variable in class org.textensor.stochdiff.model.SDRun

OutputSet - Class in org.textensor.stochdiff.model

OutputSet() - Constructor for class org.textensor.stochdiff.model.OutputSet

outputSetHM - Variable in class org.textensor.stochdiff.model.OutputScheme

outputSets - Variable in class org.textensor.stochdiff.model.OutputScheme

outputSpec - Variable in class org.textensor.stochdiff.model.OutputSet

OutputSpecie - Class in org.textensor.stochdiff.model

OutputSpecie() - Constructor for class org.textensor.stochdiff.model.OutputSpecie

outputSpecies - Variable in class org.textensor.stochdiff.model.SDRun

Oval - Class in org.catacomb.graph.drawing

Oval() - Constructor for class org.catacomb.graph.drawing.Oval

overlapFactor(double[], double[]) - Method in class org.textensor.stochdiff.numeric.morph.VolumeLine

overlapFactor(double, double, double, double, double, double) - Method in class org.textensor.stochdiff.numeric.morph.VolumeSlice

overlaps(Shape) - Method in class org.catacomb.graph.drawing.Shape

override(String) - Static method in class org.catacomb.report.E

override() - Static method in class org.catacomb.report.E

override(String) - Static method in class org.textensor.report.E

override() - Static method in class org.textensor.report.E

ovlp1D(double, double, double, double) - Method in class org.textensor.stochdiff.numeric.morph.VolumeSlice

P

p - Variable in class org.textensor.stochdiff.numeric.stochastic.FixedPStepGenerator

p_absLocated - Variable in class org.catacomb.graph.gui.PickablePoint

p_accessMethod - Variable in class org.catacomb.druid.manifest.DecFile

p_action - Variable in class org.catacomb.druid.swing.dnd.Region

p_bufAtt - Variable in class org.catacomb.serial.om.OmElement

p_bufAttachmentPoints - Variable in class org.catacomb.graph.arbor.SegmentGraph

p_cached - Variable in class org.catacomb.interlish.resource.Role

p_cachedObject - Variable in class org.catacomb.druid.manifest.DecFile

p_cachedText - Variable in class org.catacomb.druid.manifest.DecFile

p_cachePosition - Variable in class org.catacomb.graph.drawing.Shape

p_closure - Variable in class org.catacomb.graph.drawing.FixedDrawingComponent

p_closure - Variable in class org.catacomb.interlish.content.Polypoint

p_closureNames - Static variable in class org.catacomb.interlish.content.Polypoint

p_color - Variable in class org.catacomb.datalish.SColor

p_color - Variable in class org.catacomb.dataview.build.Displayable

p_color - Variable in class org.catacomb.graph.drawing.FixedDrawingComponent

p_color - Variable in class org.catacomb.graph.gui.PickablePoint

p_doneMouseListener - Variable in class org.catacomb.druid.swing.DCheckboxTree

p_doneMouseListener - Variable in class org.catacomb.druid.swing.DTree

p_extensionProto - Variable in class org.catacomb.graph.arbor.SegmentGraphPoint

p_fill - Variable in class org.catacomb.graph.drawing.FixedDrawingComponent

p_fillColor - Variable in class org.catacomb.graph.drawing.Shape

p_fullID - Variable in class org.catacomb.druid.manifest.DecFile

p_h - Variable in class org.catacomb.druid.swing.dnd.Region

p_highlight - Variable in class org.catacomb.graph.arbor.SegmentGraphPoint

p_icache - Variable in class org.catacomb.graph.gui.PickablePoint

p_index - Variable in class org.catacomb.graph.arbor.SegmentGraphPoint

p_index - Variable in class org.catacomb.graph.drawing.Shape

p_instance - Static variable in class org.catacomb.druid.xtext.canvas.FontStore

p_instance - Static variable in class org.catacomb.druid.xtext.data.XTypeStore

p_intPosition - Variable in class org.catacomb.graph.drawing.Shape

p_lineColor - Variable in class org.catacomb.graph.drawing.Shape

p_mark - Variable in class org.catacomb.graph.arbor.SegmentGraphPoint

p_nbrCache - Variable in class org.catacomb.graph.arbor.SegmentGraphPoint

p_neighbors - Variable in class org.catacomb.graph.arbor.SegmentGraphPoint

p_pickableRegion - Variable in class org.catacomb.graph.drawing.Shape

p_pixelSize - Variable in class org.catacomb.graph.gui.WorldTransform

p_pN1 - Variable in class org.catacomb.graph.arbor.SegmentGraphPoint

p_pN2 - Variable in class org.catacomb.graph.arbor.SegmentGraphPoint

p_points - Variable in class org.catacomb.graph.drawing.Shape

p_points - Variable in class org.textensor.stochdiff.model.Morphology

p_position - Variable in class org.catacomb.graph.drawing.Shape

p_position - Variable in class org.catacomb.graph.gui.PickablePoint

p_pressPosition - Variable in class org.catacomb.graph.drawing.Shape

p_products - Variable in class org.textensor.stochdiff.model.Reaction

p_protoNbrs - Variable in class org.catacomb.graph.arbor.SegmentGraphPoint

p_protos - Variable in class org.catacomb.graph.drawing.Shape

p_protosUTD - Variable in class org.catacomb.graph.drawing.Shape

p_range - Variable in class org.catacomb.graph.gui.PickablePoint

p_reactants - Variable in class org.textensor.stochdiff.model.Reaction

p_ref - Variable in class org.catacomb.druid.swing.dnd.Region

p_ref - Variable in class org.catacomb.graph.gui.PickablePoint

p_rootFolder - Variable in class org.catacomb.druid.manifest.DecFile

p_rotating - Variable in class org.catacomb.graph.drawing.Shape

p_setXRange(double, double) - Method in class org.catacomb.graph.gui.WorldTransform

p_setYRange(double, double) - Method in class org.catacomb.graph.gui.WorldTransform

p_size - Variable in class org.catacomb.graph.gui.PickablePoint

p_spineAllocations - Variable in class org.textensor.stochdiff.model.Morphology

p_status - Variable in class org.catacomb.graph.arbor.SegmentGraphPoint

p_structureWatchers - Variable in class org.catacomb.interlish.content.QuantifiedListValue

p_style - Variable in class org.catacomb.graph.gui.PickablePoint

p_symmetry - Variable in class org.catacomb.graph.drawing.Shape

p_table - Variable in class org.catacomb.graph.drawing.Shape

p_tag - Variable in class org.catacomb.druid.swing.dnd.Region

p_tip - Variable in class org.catacomb.graph.gui.PickablePoint

p_w - Variable in class org.catacomb.druid.swing.dnd.Region

p_width - Variable in class org.catacomb.graph.drawing.FixedDrawingComponent

p_widthStyle - Variable in class org.catacomb.graph.drawing.FixedDrawingComponent

p_wkx - Variable in class org.catacomb.graph.drawing.SegmentLine

p_wky - Variable in class org.catacomb.graph.drawing.SegmentLine

p_x - Variable in class org.catacomb.druid.swing.dnd.Region

p_x - Variable in class org.catacomb.graph.drawing.SegmentLine

p_y - Variable in class org.catacomb.druid.swing.dnd.Region

p_y - Variable in class org.catacomb.graph.drawing.SegmentLine

pAbs - Variable in class org.catacomb.graph.drawing.ShapePoint

pack() - Method in class org.catacomb.druid.build.Druid

pack() - Method in class org.catacomb.druid.gui.base.DruAutonomousDialog

pack() - Method in class org.catacomb.druid.gui.base.DruDialog

pack() - Method in class org.catacomb.druid.gui.base.DruEditorWindow

pack() - Method in class org.catacomb.druid.gui.base.DruFrame

pack() - Method in interface org.catacomb.interlish.structure.FrameShowable

packageName - Variable in class org.catacomb.act.Classdef

packIfNecessary() - Method in class org.catacomb.druid.gui.base.DruFrame

packShow() - Method in class org.catacomb.druid.build.Druid

packShow() - Method in class org.catacomb.icon.splash.SplashWindow

pad() - Method in class org.catacomb.datalish.Box

padBottom - Variable in class org.catacomb.druid.swing.DToggleButton

padding - Variable in class org.catacomb.druid.blocks.AbstractButton

padding - Variable in class org.catacomb.druid.blocks.TextArea

paddingBottom - Variable in class org.catacomb.druid.blocks.Panel

paddingLeft - Variable in class org.catacomb.druid.blocks.Panel

paddingRight - Variable in class org.catacomb.druid.blocks.Panel

paddingTop - Variable in class org.catacomb.druid.blocks.Panel

padLeft - Variable in class org.catacomb.druid.swing.DToggleButton

padRight - Variable in class org.catacomb.druid.swing.DToggleButton

padTop - Variable in class org.catacomb.druid.swing.DToggleButton

Page - Interface in org.catacomb.interlish.structure

PageBoard - Class in org.catacomb.druid.market

PageBoard() - Constructor for class org.catacomb.druid.market.PageBoard

pageDataChanged() - Method in class org.catacomb.druid.xtext.base.DocStore

pageDataStore - Variable in class org.catacomb.druid.xtext.canvas.DataBoard

PageDataStore - Class in org.catacomb.druid.xtext.data

PageDataStore(DocStore) - Constructor for class org.catacomb.druid.xtext.data.PageDataStore

pageDataStore - Variable in class org.catacomb.druid.xtext.edit.XRelationTree

pageDataStore - Variable in class org.catacomb.druid.xtext.edit.XTypeTree

pageDisplay - Variable in class org.catacomb.druid.gui.base.DruLinkHandler

PageDisplay - Interface in org.catacomb.interlish.structure

PageMaker - Interface in org.catacomb.interlish.structure

pageSupplier - Variable in class org.catacomb.druid.gui.base.DruLinkHandler

pageSupplier - Variable in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

PageSupplier - Interface in org.catacomb.interlish.structure

paint(Graphics) - Method in class org.catacomb.druid.swing.DSplitPaneDivider

paint(Graphics, JComponent) - Method in class org.catacomb.druid.swing.DSplitPaneUI

paint(Graphics) - Method in class org.catacomb.druid.swing.split.DSplitterBar

Paints the image of a JSplitterBar.

paint(Graphics, JComponent) - Method in class org.catacomb.graph.gui.AboveBelowSplitAxisPanelUI

paint(Graphics, JComponent) - Method in class org.catacomb.graph.gui.AboveBelowSplitPanelUI

paint(Painter) - Method in class org.catacomb.graph.gui.GridPainter

paint(Graphics) - Method in class org.catacomb.graph.gui.HorizontalAxisAxisDivider

paint(Graphics) - Method in class org.catacomb.graph.gui.HorizontalAxisGraphDivider

paint(Graphics, JComponent) - Method in class org.catacomb.graph.gui.LeftRightSplitPanelUI

paint(Graphics) - Method in class org.catacomb.graph.gui.VerticalAxisGraphDivider

paint(Graphics) - Method in class org.catacomb.icon.splash.SplashWindow

paint2D(Graphics2D) - Method in class org.catacomb.druid.swing.DTextCanvas

paint2D(Graphics2D) - Method in class org.catacomb.graph.gui.BaseCanvas

paint2D(Graphics2D) - Method in class org.catacomb.graph.gui.PickWorldCanvas

paint2D(Graphics2D) - Method in class org.catacomb.graph.gui.WorldCanvas

paint2D(Graphics2D) - Method in class org.catacomb.graph.gui.XAxisCanvas

paint2D(Graphics2D) - Method in class org.catacomb.graph.gui.YAxisCanvas

paintArrows(Graphics) - Method in class org.catacomb.druid.swing.DFloatSlider

paintArrows(Graphics) - Method in class org.catacomb.druid.swing.DSlider

paintBlock(Graphics2D, TextBlock) - Method in class org.catacomb.druid.xtext.canvas.TextBoard

paintCaret(Graphics2D) - Method in class org.catacomb.druid.xtext.canvas.TextBoard

paintComponent(Graphics) - Method in class org.catacomb.druid.swing.DDotsPanel

paintComponent(Graphics) - Method in class org.catacomb.druid.swing.DDropCanvas

paintComponent(Graphics) - Method in class org.catacomb.druid.swing.DFloatSlider

paintComponent(Graphics) - Method in class org.catacomb.druid.swing.DHRPanel

paintComponent(Graphics) - Method in class org.catacomb.druid.swing.DHTMLPane

paintComponent(Graphics) - Method in class org.catacomb.druid.swing.DSlider

paintComponent(Graphics) - Method in class org.catacomb.druid.swing.DTextCanvas

paintComponent(Graphics) - Method in class org.catacomb.druid.swing.GradientPanel

paintComponent(Graphics) - Method in class org.catacomb.graph.gui.BaseCanvas

paintComponent(Graphics) - Method in class org.catacomb.graph.gui.WorldCanvas

paintDoc(Graphics2D) - Method in class org.catacomb.druid.xtext.canvas.TextBoard

painter - Variable in class org.catacomb.dataview.GraphMaker

painter - Variable in class org.catacomb.graph.gui.Builder

Painter - Class in org.catacomb.graph.gui

Painter(WorldTransform) - Constructor for class org.catacomb.graph.gui.Painter

painter - Variable in class org.catacomb.graph.gui.WorldCanvas

painters - Variable in class org.catacomb.dataview.DataviewController

paintFloat(Graphics2D, TextFloat) - Method in class org.catacomb.druid.swing.DDropCanvas

paintHorizontalLine(Graphics, JComponent, int, int, int) - Method in class org.catacomb.druid.swing.ui.DruidTreeUI

paintIcon(Component, Graphics, int, int) - Method in class org.catacomb.druid.swing.DChoice

paintIcon(Component, Graphics, int, int) - Method in class org.catacomb.druid.swing.DComboBoxUI

paintIcon(Component, Graphics, int, int) - Method in class org.catacomb.druid.swing.DValueHistory

PaintInstructor - Interface in org.catacomb.graph.gui

paintInstructor - Variable in class org.catacomb.graph.gui.WorldCanvas

paintKnob(Graphics) - Method in class org.catacomb.druid.swing.DFloatSlider

paintKnob(Graphics) - Method in class org.catacomb.druid.swing.DSlider

paintLegend(int, String) - Method in class org.catacomb.graph.gui.Painter

paintLiveTrash() - Method in class org.catacomb.graph.gui.Painter

paintProto(SegmentGraphPoint, Painter, Builder) - Method in class org.catacomb.graph.arbor.SegmentGraphVE

paintReal(SegmentGraphPoint, Painter, Builder) - Method in class org.catacomb.graph.arbor.SegmentGraphPainter

paintReal(SegmentGraphPoint, Painter, Builder) - Method in class org.catacomb.graph.arbor.SegmentGraphVE

paintSprite(Painter, SpriteData, Placement) - Method in class org.catacomb.graph.gui.SpriteMoviePainter

paintText(Graphics2D) - Method in class org.catacomb.druid.swing.DDropCanvas

paintText(Graphics2D) - Method in class org.catacomb.druid.xtext.canvas.DataBoard

paintText(Graphics2D) - Method in class org.catacomb.druid.xtext.canvas.TextBoard

paintText(Graphics2D) - Method in class org.catacomb.druid.xtext.edit.TrashBoard

paintText(Graphics2D) - Method in class org.catacomb.druid.xtext.edit.XRelationTree

paintText(Graphics2D) - Method in class org.catacomb.druid.xtext.edit.XTypeTree

paintText(Graphics2D) - Method in interface org.catacomb.interlish.structure.TextPainter

paintTrash() - Method in class org.catacomb.graph.gui.Painter

paintTrash(boolean) - Method in class org.catacomb.graph.gui.Painter

paintVerticalLine(Graphics, JComponent, int, int, int) - Method in class org.catacomb.druid.swing.ui.DruidTreeUI

pairValue - Variable in class org.catacomb.serial.xml.NVPair

palSize - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

PAN - Static variable in class org.catacomb.graph.gui.WorldCanvas

PAN - Static variable in class org.textensor.vis.SceneGraphViewer

panel - Variable in class org.catacomb.druid.blocks.AutonomousDialog

panel - Variable in class org.catacomb.druid.blocks.Dialog

panel - Variable in class org.catacomb.druid.blocks.Frame

Panel - Class in org.catacomb.druid.blocks

Panel() - Constructor for class org.catacomb.druid.blocks.Panel

panel - Variable in class org.catacomb.druid.blocks.ScrollPanel

panel - Variable in class org.textensor.vis.SceneGraphViewer

panelcount - Static variable in class org.catacomb.druid.blocks.Panel

PanelDesigns - Class in org.catacomb.druid.blocks

PanelDesigns() - Constructor for class org.catacomb.druid.blocks.PanelDesigns

PanelFactory - Interface in org.catacomb.druid.build

PanelInserter - Class in org.catacomb.druid.blocks

PanelInserter() - Constructor for class org.catacomb.druid.blocks.PanelInserter

PanelListener - Interface in org.catacomb.druid.event

PanelPack - Class in org.catacomb.druid.gui.base

PanelPack(DruPanel, ArrayList<Object>, HashMap<String, Object>) - Constructor for class org.catacomb.druid.gui.base.PanelPack

panels - Variable in class org.catacomb.dataview.build.CompoundView

panels - Variable in class org.catacomb.dataview.build.Dataview

panels - Variable in class org.catacomb.druid.gui.base.DruPseudoCardPanel

panelsDtoDru - Variable in class org.catacomb.druid.gui.base.DruTabbedPanel

panelShown(Object) - Method in interface org.catacomb.druid.event.PanelListener

panelShown(Object) - Method in class org.catacomb.druid.gui.base.DruTabbedPanel

PanelWrapper - Interface in org.catacomb.druid.gui.base

PanHandler - Class in org.catacomb.graph.gui

PanHandler() - Constructor for class org.catacomb.graph.gui.PanHandler

panHandler - Variable in class org.catacomb.graph.gui.WorldCanvas

paragraphize(String) - Method in class org.catacomb.xdoc.TextTagger

paragraphize1(String) - Method in class org.catacomb.xdoc.TextTagger

paragraphize2(String) - Method in class org.catacomb.xdoc.TextTagger

paragraphMatch - Static variable in class org.catacomb.xdoc.TextTagger

paragraphSeparator - Static variable in class org.catacomb.xdoc.TextTagger

parallelAndSharedDiffusionStep(int, int) - Method in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

parallelAndSharedDiffusionStep(int, int) - Method in class org.textensor.stochdiff.numeric.tmp.Tmp1A

parallelDiffusionStep(int, int) - Method in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

parallelDiffusionStep(int, int) - Method in class org.textensor.stochdiff.numeric.tmp.Tmp1A

parent - Variable in class org.catacomb.dataview.formats.SWCDisplay.Node

parent - Variable in class org.catacomb.druid.util.examples.DemoNode

parent - Variable in class org.catacomb.druid.util.tree.ArrayListNode

parent - Variable in class org.catacomb.druid.xtext.base.DMItem

Parent - Interface in org.catacomb.interlish.structure

parent - Variable in class org.catacomb.numeric.data.DVector

parent - Variable in class org.catacomb.util.StringTree

parent - Variable in class org.catacomb.util.StringTreeLeaf

parent - Variable in class org.textensor.stochdiff.neuroml.segment

parent - Variable in class org.textensor.stochdiff.numeric.morph.TreePoint

parent - Variable in class org.textensor.vis.IcingPoint

parentCB - Variable in class org.catacomb.druid.xtext.base.MarkerBlock

parentContext - Variable in class org.catacomb.druid.build.Context

parentContext - Variable in class org.catacomb.druid.build.Druid

parentHM - Variable in class org.catacomb.druid.util.tree.RelationNode

parentIndex - Variable in class org.catacomb.numeric.difnet.CellPoint

parentizeFrom(TreePoint, TreePoint[]) - Static method in class org.textensor.stochdiff.disc.TreeUtil

parentMenu - Variable in class org.catacomb.druid.gui.edit.DruMenu

parentMoved() - Method in interface org.catacomb.interlish.structure.Socket

parentPackage(String) - Static method in class org.catacomb.util.PathUtil

parentPanel - Variable in class org.catacomb.druid.swing.DTextCanvas

parentPath(String) - Static method in class org.catacomb.icon.splash.Splasher

parentPath(String) - Static method in class org.catacomb.util.PathUtil

ParentReporter - Interface in org.catacomb.interlish.structure

parentShape - Variable in class org.catacomb.graph.drawing.ShapePoint

parseColor(String) - Static method in class org.catacomb.datalish.SColor

parseColor(String) - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

parseColor(String) - Static method in class org.catacomb.util.ColorUtil

parseDouble(String) - Static method in class org.catacomb.interlish.reflect.Narrower

parseDouble(String) - Static method in class org.textensor.xml.Narrower

parseHexColor(String) - Static method in class org.catacomb.util.ColorUtil

parseInt(String) - Static method in class org.catacomb.interlish.reflect.Narrower

parseInt(String) - Static method in class org.textensor.xml.Narrower

parseLine(String) - Method in class org.catacomb.dataview.formats.MeshDataReader

parseList(String, HashMap<String, Specie>) - Method in class org.textensor.stochdiff.model.Reaction

parseRefs(ArrayList<? extends SpecieRef>, HashMap<String, Specie>) - Method in class org.textensor.stochdiff.model.Reaction

parseWidth(String) - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

parseWidthStyle(String) - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

partBranchOffset - Variable in class org.textensor.stochdiff.numeric.morph.TreePoint

partialFlatten() - Method in class org.catacomb.util.StringTree

particleDiffusionStep(int, int) - Method in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

particleDiffusionStep(int, int) - Method in class org.textensor.stochdiff.numeric.tmp.Tmp1A

PARTICLES_PUASD - Static variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

PARTICLES_PUASD - Static variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

PARTICLES_PUVC - Static variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

PARTICLES_PUVC - Static variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

PARTICLES_PUVC - Static variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

partof - Variable in class org.textensor.vis.IcingPoint

parts - Variable in class org.catacomb.datalish.SpriteData

PasteDestination - Interface in org.catacomb.interlish.structure

path - Variable in class org.catacomb.dataview.build.DataSource

path - Variable in class org.catacomb.druid.build.GUIPath

path - Variable in class org.catacomb.druid.swing.dnd.DdndTransferable

PATH - Static variable in class org.catacomb.graph.arbor.SegmentGraphVE

path - Variable in class org.catacomb.util.StringTree

Pathed - Interface in org.catacomb.interlish.structure

PathLocated - Interface in org.catacomb.interlish.structure

pathRequired - Variable in class org.catacomb.druid.gui.edit.DruTreePanel

paths - Variable in class org.catacomb.druid.load.DruidResourceLoader

paths - Static variable in class org.catacomb.interlish.reflect.ReflectionConstructor

pathTo(TreeNode) - Method in class org.catacomb.druid.gui.edit.DruCheckboxTreePanel

pathTo(TreeNode) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

pathToOpen - Variable in class org.catacomb.druid.gui.edit.DruTreePanel

PathUtil - Class in org.catacomb.util

PathUtil() - Constructor for class org.catacomb.util.PathUtil

pause() - Method in class org.catacomb.dataview.FrameController

pause() - Method in class org.catacomb.dataview.gui.FramePlayerController

pause() - Method in class org.catacomb.druid.chunk.MoviePlayController

pause() - Method in class org.catacomb.graph.gui.MovieDisplay

pause(int) - Static method in class org.catacomb.interlish.report.Slower

pause() - Method in interface org.catacomb.interlish.structure.RunProcess

pause(int) - Static method in class org.catacomb.report.E

pause(int) - Static method in class org.textensor.report.E

pauseButton - Variable in class org.catacomb.dataview.FrameController

pauseButton - Variable in class org.catacomb.dataview.gui.FramePlayerController

PAUSED - Static variable in interface org.catacomb.interlish.structure.StateProcess

pauseDePause() - Method in class org.catacomb.graph.gui.MovieDisplay

pauseDePause() - Method in interface org.catacomb.interlish.structure.MovieOperator

pB - Variable in class org.catacomb.druid.swing.RolloverEffect

pB - Variable in class org.catacomb.graph.gui.RolloverEffect

pCache - Variable in class org.catacomb.graph.drawing.ShapePoint

pcx - Variable in class org.catacomb.graph.gui.WorldTransform

pcy - Variable in class org.catacomb.graph.gui.WorldTransform

pdStore - Variable in class org.catacomb.druid.xtext.base.XTDoc

peer - Variable in class org.catacomb.druid.util.tree.RelationNode

peer - Variable in class org.catacomb.interlish.content.BooleanValue

peer - Variable in class org.catacomb.interlish.content.DoubleValue

peerHM - Variable in class org.catacomb.numeric.mesh.DifMeshBuilder

peerIndex - Variable in class org.catacomb.numeric.difnet.calc.NetMapLink

peerIndex - Variable in class org.catacomb.numeric.difnet.calc.NetMapNode

peers - Variable in class org.catacomb.druid.util.tree.RelationTree

pendingEntry - Variable in class org.catacomb.druid.gui.edit.DruLogPanel

perform() - Method in interface org.catacomb.be.Event

perform() - Method in class org.catacomb.datalish.SpriteEvents

perform(String, Object) - Method in class org.catacomb.interlish.service.ActionManager

performAction(String) - Method in class org.catacomb.druid.gui.edit.DruGCPanel

performAction(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruGCPanel

performAction(String, Object) - Method in interface org.catacomb.interlish.service.Performer

Performer - Interface in org.catacomb.interlish.service

performerHM - Variable in class org.catacomb.interlish.service.ActionManager

perimeterDistance(Position, Heading, double) - Static method in class org.catacomb.geom.Geom

period - Variable in class org.textensor.stochdiff.model.InjectionStim

period - Variable in class org.textensor.stochdiff.numeric.chem.StimulationTable

perm - Variable in class org.catacomb.numeric.math.Matrix

perm - Variable in class org.textensor.stochdiff.numeric.math.Matrix

permanentPan(int, int, int, int) - Method in class org.catacomb.graph.gui.Mouse

permanentPan(int, int, int, int) - Method in class org.catacomb.graph.gui.WorldCanvas

permanentPan(int, int, int, int) - Method in class org.catacomb.graph.gui.WorldTransform

ph - Variable in class org.catacomb.druid.swing.DFrame

Phys - Class in org.catacomb.numeric.phys

Phys() - Constructor for class org.catacomb.numeric.phys.Phys

Phys - Class in org.textensor.stochdiff.phys

Phys() - Constructor for class org.textensor.stochdiff.phys.Phys

Pickable - Interface in org.catacomb.graph.gui

pickablePoint - Variable in class org.catacomb.graph.drawing.ShapePoint

PickablePoint - Class in org.catacomb.graph.gui

PickablePoint() - Constructor for class org.catacomb.graph.gui.PickablePoint

PickablePoint(Object) - Constructor for class org.catacomb.graph.gui.PickablePoint

PickablePoint(double, double) - Constructor for class org.catacomb.graph.gui.PickablePoint

PickablePoint(Position, Object) - Constructor for class org.catacomb.graph.gui.PickablePoint

PickablePoint(Position, Object, int) - Constructor for class org.catacomb.graph.gui.PickablePoint

PickablePoint(double, double, Object) - Constructor for class org.catacomb.graph.gui.PickablePoint

PickablePoint(double, double, Color, Object) - Constructor for class org.catacomb.graph.gui.PickablePoint

PickablePoint(double, double, Color, Object, int, int) - Constructor for class org.catacomb.graph.gui.PickablePoint

PickableRegion - Class in org.catacomb.graph.gui

PickableRegion(double[][], Object) - Constructor for class org.catacomb.graph.gui.PickableRegion

PickableRegion(double[], double[], Object) - Constructor for class org.catacomb.graph.gui.PickableRegion

pickDragged(Pickable, Position, int, int, int) - Method in class org.catacomb.graph.arbor.SegmentGraphVE

pickDragged(Pickable, Position, int, int, int) - Method in interface org.catacomb.graph.gui.PickListener

pickDragged(Pickable, Position, int, int, int) - Method in class org.catacomb.graph.gui.ZoneDemo

pickEnteredTrash(Pickable) - Method in class org.catacomb.graph.arbor.SegmentGraphVE

pickEnteredTrash(Pickable) - Method in interface org.catacomb.graph.gui.PickListener

pickEnteredTrash(Pickable) - Method in class org.catacomb.graph.gui.ZoneDemo

pickHandler - Variable in class org.catacomb.graph.gui.HoverTimer

PickHandler - Class in org.catacomb.graph.gui

PickHandler(PickStore, WorldTransform) - Constructor for class org.catacomb.graph.gui.PickHandler

pickHandler - Variable in class org.catacomb.graph.gui.PickWorldCanvas

pickHovered(Pickable) - Method in class org.catacomb.graph.arbor.SegmentGraphVE

pickHovered(Pickable) - Method in interface org.catacomb.graph.gui.PickListener

pickHovered(Pickable) - Method in class org.catacomb.graph.gui.ZoneDemo

pickLeftTrash(Pickable) - Method in class org.catacomb.graph.arbor.SegmentGraphVE

pickLeftTrash(Pickable) - Method in interface org.catacomb.graph.gui.PickListener

pickLeftTrash(Pickable) - Method in class org.catacomb.graph.gui.ZoneDemo

pickListener - Variable in class org.catacomb.graph.gui.PickHandler

PickListener - Interface in org.catacomb.graph.gui

pickPressed(Pickable, int, int, int) - Method in class org.catacomb.graph.arbor.SegmentGraphVE

pickPressed(Pickable, int, int, int) - Method in interface org.catacomb.graph.gui.PickListener

pickPressed(Pickable, int, int, int) - Method in class org.catacomb.graph.gui.ZoneDemo

pickReleased(Pickable, int) - Method in class org.catacomb.graph.arbor.SegmentGraphVE

pickReleased(Pickable, int) - Method in interface org.catacomb.graph.gui.PickListener

pickReleased(Pickable, int) - Method in class org.catacomb.graph.gui.ZoneDemo

pickStore - Variable in class org.catacomb.graph.gui.Builder

pickStore - Variable in class org.catacomb.graph.gui.PickHandler

PickStore - Class in org.catacomb.graph.gui

PickStore() - Constructor for class org.catacomb.graph.gui.PickStore

pickStore - Variable in class org.catacomb.graph.gui.PickWorldCanvas

pickTrashed(Pickable) - Method in class org.catacomb.graph.arbor.SegmentGraphVE

pickTrashed(Pickable) - Method in interface org.catacomb.graph.gui.PickListener

pickTrashed(Pickable) - Method in class org.catacomb.graph.gui.ZoneDemo

pickWorldCanvas - Variable in class org.catacomb.graph.gui.CornerPanel

PickWorldCanvas - Class in org.catacomb.graph.gui

PickWorldCanvas(int, int, boolean) - Constructor for class org.catacomb.graph.gui.PickWorldCanvas

PicoSD - Class in org.textensor.stochdiff.model

PicoSD() - Constructor for class org.textensor.stochdiff.model.PicoSD

pidat - Variable in class org.catacomb.druid.swing.DFrame

pInstance - Static variable in class org.textensor.stochdiff.numeric.stochastic.InterpolatingStepGenerator

pivotChoice - Variable in class org.catacomb.druid.gui.edit.DruTreePanel

PivotedTree - Interface in org.catacomb.interlish.structure

pivotNames - Variable in class org.catacomb.druid.util.tree.RelationTree

pivotOrders - Variable in class org.catacomb.druid.util.tree.RelationTree

pivotSelection - Variable in class org.catacomb.druid.blocks.TreePanel

pixAry - Variable in class org.catacomb.movie.gif.LZWEncoder

PIXELS - Static variable in class org.catacomb.graph.drawing.FixedDrawingComponent

pixels - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

pkgs - Variable in class org.catacomb.interlish.reflect.ReflectionConstructor

pkgs - Variable in class org.textensor.xml.ReflectionInstantiator

pL - Variable in class org.catacomb.druid.swing.RolloverEffect

pL - Variable in class org.catacomb.graph.gui.RolloverEffect

Placeholder - Class in org.catacomb.druid.blocks

Placeholder() - Constructor for class org.catacomb.druid.blocks.Placeholder

Placement - Class in org.catacomb.be

Placement(double, double, double, double, double) - Constructor for class org.catacomb.be.Placement

Placement(Position, Direction, double) - Constructor for class org.catacomb.be.Placement

Placement(Position, Direction) - Constructor for class org.catacomb.be.Placement

Placement(double[], double[], double) - Constructor for class org.catacomb.be.Placement

placement - Variable in class org.catacomb.datalish.SpritePlacement

placements - Variable in class org.catacomb.datalish.SceneConfig

PLAIN_TEXT - Static variable in class org.catacomb.xdoc.HTMLPage

plainfont - Static variable in class org.catacomb.druid.swing.DBaseButton

plainfont - Static variable in class org.catacomb.druid.swing.DEditorPane

plainfont - Static variable in class org.catacomb.druid.swing.DFillGuage

plainfont - Static variable in class org.catacomb.druid.swing.DLabel

plainfont - Static variable in class org.catacomb.druid.swing.DList

PLAINFONT - Static variable in class org.catacomb.druid.swing.DPanel

plainfont - Static variable in class org.catacomb.druid.swing.DProgressReport

planeConnect(CurvedVolumeSlice) - Method in class org.textensor.stochdiff.disc.CurvedVolumeSlice

planeConnect(VolumeLine) - Method in class org.textensor.stochdiff.numeric.morph.VolumeLine

planeConnect(VolumeSlice) - Method in class org.textensor.stochdiff.numeric.morph.VolumeSlice

planeConnectUp(VolumeSlice) - Method in class org.textensor.stochdiff.numeric.morph.VolumeSlice

PlaneTest - Class in org.textensor.stochdiff.examples.plane

PlaneTest() - Constructor for class org.textensor.stochdiff.examples.plane.PlaneTest

play() - Method in class org.catacomb.dataview.FrameController

play() - Method in class org.catacomb.dataview.gui.FramePlayerController

play() - Method in class org.catacomb.druid.chunk.MoviePlayController

play() - Method in class org.catacomb.graph.gui.MovieDisplay

pListener - Variable in class org.catacomb.druid.swing.DTabbedPane

plot - Variable in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

Plot - Class in org.catacomb.dataview

Plot() - Constructor for class org.catacomb.dataview.Plot

PlotElement - Class in org.catacomb.dataview

PlotElement() - Constructor for class org.catacomb.dataview.PlotElement

plotNames - Variable in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

plotNames - Variable in class org.catacomb.dataview.formats.PolyLineHandler

plotsList - Variable in class org.catacomb.dataview.gui.DViewPlotController

Plottable - Class in org.catacomb.dataview.model

Plottable() - Constructor for class org.catacomb.dataview.model.Plottable

Plotter - Class in org.catacomb.dataview

Plotter() - Constructor for class org.catacomb.dataview.Plotter

Plug - Interface in org.catacomb.interlish.structure

plus(double) - Method in class org.textensor.stochdiff.numeric.math.Column

plus(Column) - Method in class org.textensor.stochdiff.numeric.math.Column

pMenu - Variable in class org.catacomb.graph.gui.GraphContextMenu

pnTable - Variable in class org.textensor.stochdiff.numeric.stochastic.InterpolatingStepGenerator

poidev(double) - Static method in class org.catacomb.numeric.math.Random

poidev(double, MersenneTwister) - Static method in class org.textensor.stochdiff.numeric.math.RandomMath

PointAttachable - Interface in org.catacomb.interlish.structure

pointBoxes - Variable in class org.catacomb.graph.gui.PickStore

pointClicked(int, int, int) - Method in class org.catacomb.druid.gui.edit.DruListPanel

pointClicked(int, int, int) - Method in interface org.catacomb.interlish.interact.ClickListener

pointColor - Variable in class org.catacomb.graph.drawing.Shape

pointConnect(MorphPoint) - Method in class org.textensor.stochdiff.model.EndPoint

pointCount - Variable in class org.textensor.stochdiff.numeric.morph.TreeWriter

PointCurrentStim - Class in org.catacomb.numeric.difnet.model

PointCurrentStim(String, String, String, ScalarFunction) - Constructor for class org.catacomb.numeric.difnet.model.PointCurrentStim

pointIsInside(double[], double[], int, int) - Static method in class org.catacomb.graph.gui.Geom

pointIsInside(double[], double[], double, double) - Static method in class org.catacomb.graph.gui.Geom

pointIsInside(double, double, double[], double[]) - Static method in class org.catacomb.graph.gui.Iconizer

pointLeadsArrays - Variable in class org.catacomb.graph.drawing.Shape

pointPainter - Variable in class org.catacomb.graph.gui.Painter

PointPainter - Class in org.catacomb.graph.gui

PointPainter() - Constructor for class org.catacomb.graph.gui.PointPainter

pointPressed(ShapePoint) - Method in class org.catacomb.graph.drawing.Shape

PointRecorder - Class in org.catacomb.numeric.difnet.model

PointRecorder(String, String, String) - Constructor for class org.catacomb.numeric.difnet.model.PointRecorder

pointRecorders - Variable in class org.catacomb.numeric.difnet.model.BasicNetRecorder

points - Variable in class org.catacomb.graph.arbor.SegmentGraph

points - Variable in class org.catacomb.graph.gui.PickStore

points - Variable in class org.catacomb.graph.gui.ZoneDemo

points - Variable in class org.catacomb.numeric.mesh.DifMesh

points - Variable in class org.catacomb.numeric.mesh.DifMeshBuilder

points - Variable in class org.textensor.stochdiff.numeric.morph.TreeWriter

pointShown(int, String) - Method in class org.catacomb.druid.gui.edit.DruSlider

pointShown(int, String) - Method in class org.catacomb.druid.swing.DSlider

PointsPlotElement - Class in org.catacomb.dataview

PointsPlotElement(double[], double[]) - Constructor for class org.catacomb.dataview.PointsPlotElement

PointsPlotElement(double[], double[], Color) - Constructor for class org.catacomb.dataview.PointsPlotElement

PointsPlotElement(double[], double[], Color, int) - Constructor for class org.catacomb.dataview.PointsPlotElement

PointsPlotElement(double[], double[], Color, int, int) - Constructor for class org.catacomb.dataview.PointsPlotElement

PointStim - Class in org.catacomb.numeric.difnet.model

PointStim(String, String, String) - Constructor for class org.catacomb.numeric.difnet.model.PointStim

pointStims - Variable in class org.catacomb.numeric.difnet.model.BasicNetStim

PointVoltageStim - Class in org.catacomb.numeric.difnet.model

PointVoltageStim(String, String, String, ScalarFunction) - Constructor for class org.catacomb.numeric.difnet.model.PointVoltageStim

poisson(double) - Method in class org.textensor.stochdiff.numeric.math.MersenneTwister

poissonInt(double) - Static method in class org.catacomb.numeric.math.Random

poissonInt(double, MersenneTwister) - Static method in class org.textensor.stochdiff.numeric.math.RandomMath

poissonStep(int, double, double, double) - Static method in class org.textensor.stochdiff.numeric.stochastic.StepGenerator

PolygonPlotElement - Class in org.catacomb.dataview

PolygonPlotElement(double[], double[]) - Constructor for class org.catacomb.dataview.PolygonPlotElement

PolygonPlotElement(double[], double[], Color) - Constructor for class org.catacomb.dataview.PolygonPlotElement

PolygonPlotElement(double[], double[], Color, String) - Constructor for class org.catacomb.dataview.PolygonPlotElement

PolyLine - Class in org.catacomb.dataview.display

PolyLine(String, Color, double[], double[], double) - Constructor for class org.catacomb.dataview.display.PolyLine

PolyLineHandler - Class in org.catacomb.dataview.formats

PolyLineHandler() - Constructor for class org.catacomb.dataview.formats.PolyLineHandler

Polypoint - Class in org.catacomb.interlish.content

Polypoint() - Constructor for class org.catacomb.interlish.content.Polypoint

Polypoint(double[], double[]) - Constructor for class org.catacomb.interlish.content.Polypoint

Polypoint(double[], double[], int) - Constructor for class org.catacomb.interlish.content.Polypoint

poolVolume - Variable in class org.textensor.stochdiff.model.SDRun

pop() - Method in class org.catacomb.interlish.content.Stack

popB - Variable in class org.catacomb.druid.swing.DPopLabel

PopulableMenu - Interface in org.catacomb.interlish.structure

populate(Object, Element) - Method in class org.catacomb.interlish.reflect.ObjectBuilder

populate(Object, Element) - Method in interface org.catacomb.interlish.structure.Factory

populate(Object, Element) - Method in class org.catacomb.numeric.data.NumDataSetFactory

populate(NumDataSet, Element) - Method in class org.catacomb.numeric.data.NumDataSetFactory

populateFrom(Element) - Method in class org.catacomb.druid.blocks.HTMLContent

populateFrom(Element) - Method in class org.catacomb.interlish.resource.Role

populateFrom(Element) - Method in interface org.catacomb.interlish.structure.ElementReader

populateFrom(String) - Method in class org.catacomb.serial.quickxml.Element

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.AssemblyPanel

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.BorderPanel

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.BrowserPanel

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.Button

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.Canvas

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.Checkbox

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.CheckboxList

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.CheckboxTree

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.Choice

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.CollapsiblePanel

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.ColorChoice

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.ContainerPanel

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.DashedLine

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.DataDisplay

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.DrawingCanvas

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.DropBox

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.ExpandingTextArea

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.FillGuage

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.FloatSlider

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.HTMLPanel

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.ImageLabel

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.InfoButton

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.InfoPanel

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.IntSlider

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.KitPanel

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.Label

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.LabelledTextField

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.List

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.LoggedButton

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.LogPanel

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.MenuButton

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.MovieDisplay

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.MultiPanel

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.Panel

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.Placeholder

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.ProgressReport

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.RadioButtons

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.ScratchPanel

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.ScrollableTextPanel

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.ScrollingCheckboxList

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.ScrollingHTMLPanel

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.ScrollingInfoPanel

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.ScrollingList

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.ScrollPanel

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.SimpleSlider

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.Slider

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.StatusBar

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.TextArea

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.TextField

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.TextPanel

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.ToggleButton

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.ToggleList

populatePanel(DruPanel, Context, GUIPath) - Method in class org.catacomb.druid.blocks.TreePanel

populations - Variable in class org.textensor.stochdiff.numeric.morph.SpineDistribution

popup - Variable in class org.catacomb.druid.blocks.TreePanel

popupID - Variable in class org.catacomb.druid.gui.edit.DruMenuButton

PopupMenu - Class in org.catacomb.druid.blocks

PopupMenu() - Constructor for class org.catacomb.druid.blocks.PopupMenu

port - Variable in class org.catacomb.numeric.difnet.model.PointRecorder

port - Variable in class org.catacomb.numeric.difnet.model.PointStim

Portal - Interface in org.catacomb.interlish.structure

position - Variable in class org.catacomb.be.Placement

Position - Class in org.catacomb.be

Position() - Constructor for class org.catacomb.be.Position

Position(XYLocation) - Constructor for class org.catacomb.be.Position

Position(double, double) - Constructor for class org.catacomb.be.Position

position - Variable in class org.catacomb.datalish.SpriteMarker

position - Variable in class org.catacomb.numeric.data.SimpleSpriteBlock

position(double, double, double) - Static method in class org.textensor.stochdiff.geom.Geom

Position - Interface in org.textensor.stochdiff.geom

Positioner - Interface in org.catacomb.interlish.structure

positions - Variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

positivize() - Method in class org.textensor.stochdiff.numeric.math.Column

possErrText - Static variable in class org.catacomb.report.E

possibleError(String) - Static method in class org.catacomb.report.E

postApply() - Method in class org.catacomb.druid.gui.base.DruAssemblyPanel

postApply() - Method in class org.catacomb.druid.gui.base.DruImageLabelPanel

postApply() - Method in class org.catacomb.druid.gui.base.DruLabelPanel

postApply() - Method in class org.catacomb.druid.gui.base.DruPanel

postApply() - Method in class org.catacomb.druid.gui.edit.DruButton

postApply() - Method in class org.catacomb.druid.gui.edit.DruCheckbox

postApply() - Method in class org.catacomb.druid.gui.edit.DruColorChoice

postApply() - Method in class org.catacomb.druid.gui.edit.DruFloat

postApply() - Method in class org.catacomb.druid.gui.edit.DruRadioButtons

postPaint(Graphics2D) - Method in class org.catacomb.graph.gui.PickWorldCanvas

postPaint(Graphics2D) - Method in class org.catacomb.graph.gui.WorldCanvas

pow(Position) - Method in class org.catacomb.graph.gui.Painter

power(int) - Method in class org.catacomb.numeric.math.Matrix

power(int) - Method in class org.textensor.stochdiff.numeric.math.Matrix

powx(double) - Method in class org.catacomb.graph.gui.Painter

powx(double) - Method in class org.catacomb.graph.gui.WorldTransform

powy(double) - Method in class org.catacomb.graph.gui.Painter

powy(double) - Method in class org.catacomb.graph.gui.WorldTransform

pR - Variable in class org.catacomb.druid.swing.RolloverEffect

pR - Variable in class org.catacomb.graph.gui.RolloverEffect

pr - Variable in class org.textensor.vis.IcingPoint

preComment - Variable in class org.catacomb.act.FieldSignature

pref - Variable in class org.catacomb.druid.swing.DDotsPanel

pref - Variable in class org.catacomb.druid.swing.DHRPanel

prefDim - Variable in class org.catacomb.graph.gui.DataDisplay

prefDim - Variable in class org.catacomb.graph.gui.MovieDisplay

preferredLayoutSize(Container) - Method in class org.catacomb.druid.swing.split.SplitterLayout

prefh - Variable in class org.catacomb.druid.gui.base.DruAssemblyPanel

prefh - Variable in class org.catacomb.graph.gui.BaseCanvas

prefHeight - Variable in class org.catacomb.druid.blocks.Frame

prefHeight - Variable in class org.catacomb.druid.blocks.Panel

prefix - Variable in class org.catacomb.druid.manifest.MultiManifester

prefixLabel(String) - Method in class org.catacomb.util.StringTree

preformat - Variable in class org.catacomb.druid.blocks.HTMLPanel

preformat - Variable in class org.catacomb.druid.blocks.ScrollingHTMLPanel

preformat - Variable in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

preformatted - Variable in class org.catacomb.druid.gui.edit.DruHTMLPanel

prefTooltip - Variable in class org.catacomb.druid.swing.DChoice

prefw - Variable in class org.catacomb.druid.gui.base.DruAssemblyPanel

prefw - Variable in class org.catacomb.graph.gui.BaseCanvas

prefWidth - Variable in class org.catacomb.druid.blocks.Frame

prefWidth - Variable in class org.catacomb.druid.blocks.Panel

prePaint(Graphics2D) - Method in class org.catacomb.graph.gui.PickWorldCanvas

prePaint(Graphics2D) - Method in class org.catacomb.graph.gui.WorldCanvas

prePaintRegions(Graphics2D) - Method in class org.catacomb.druid.swing.dnd.RegionBoard

prependElement(String, String) - Method in class org.catacomb.serial.quickxml.Element

prependElement(Element) - Method in class org.catacomb.serial.quickxml.Element

prependElementUnique(String, String) - Method in class org.catacomb.serial.quickxml.Element

prependHandler(MouseHandler) - Method in class org.catacomb.graph.gui.Mouse

prependHandler(MouseHandler) - Method in class org.catacomb.graph.gui.WorldCanvas

PreSaveValidable - Interface in org.catacomb.interlish.structure

preSaveValidate() - Method in interface org.catacomb.interlish.structure.PreSaveValidable

present - Variable in class org.textensor.stochdiff.numeric.morph.VolumeSlice

Presentable - Interface in org.catacomb.interlish.structure

Presenter - Interface in org.catacomb.interlish.structure

PreserveTotal - Class in org.textensor.stochdiff.model

PreserveTotal() - Constructor for class org.textensor.stochdiff.model.PreserveTotal

preserveTotals - Variable in class org.textensor.stochdiff.model.FitConstraints

preShowSync() - Method in class org.catacomb.druid.gui.edit.DruMenu

preShowSync() - Method in class org.catacomb.druid.swing.DMenu

press(int, int) - Method in class org.catacomb.druid.swing.dnd.RegionStore

pressOn - Variable in class org.catacomb.druid.swing.DToggleButton

pressRadius - Variable in class org.catacomb.graph.arbor.SegmentGraphVE

pressRegion - Variable in class org.catacomb.druid.swing.dnd.RegionStore

pressX - Variable in class org.catacomb.graph.arbor.SegmentGraphVE

pressY - Variable in class org.catacomb.graph.arbor.SegmentGraphVE

previous() - Method in class org.catacomb.druid.xtext.base.Block

previousBlock - Variable in class org.catacomb.druid.xtext.base.Block

previousDragRegion - Variable in class org.catacomb.druid.swing.dnd.RegionDropTarget

previousTextBlock() - Method in class org.catacomb.druid.xtext.base.TextBlock

previousTime - Variable in class org.catacomb.be.TimePoint

preWrap(String) - Method in class org.catacomb.xdoc.TextTagger

Primary - Interface in org.catacomb.interlish.structure

prime1 - Static variable in class org.catacomb.movie.gif.NeuQuant

prime2 - Static variable in class org.catacomb.movie.gif.NeuQuant

prime3 - Static variable in class org.catacomb.movie.gif.NeuQuant

prime4 - Static variable in class org.catacomb.movie.gif.NeuQuant

PRIMITIVES_ONLY - Static variable in class org.catacomb.serial.SerializationContext

PrimitiveValue - Class in org.catacomb.interlish.content

PrimitiveValue() - Constructor for class org.catacomb.interlish.content.PrimitiveValue

PrimitiveValue(boolean) - Constructor for class org.catacomb.interlish.content.PrimitiveValue

print() - Method in interface org.catacomb.be.Printable

print() - Method in class org.catacomb.numeric.difnet.calc.OrderedNetMap

print() - Method in class org.catacomb.numeric.math.Matrix

print(int) - Static method in class org.catacomb.util.NumUtil

print(double) - Static method in class org.catacomb.util.NumUtil

print(double, double) - Static method in class org.catacomb.util.NumUtil

print() - Method in class org.catacomb.util.StringTree

print(String) - Method in class org.catacomb.util.StringTree

print() - Method in class org.textensor.stochdiff.model.OutputScheme

print() - Method in class org.textensor.stochdiff.model.OutputSet

print() - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

print() - Method in class org.textensor.stochdiff.numeric.math.Column

print() - Method in class org.textensor.stochdiff.numeric.math.Matrix

print(int) - Method in class org.textensor.stochdiff.numeric.stochastic.BinomialTable

print() - Method in class org.textensor.stochdiff.numeric.stochastic.NGoTable

print_1_line(String, Object) - Method in class org.catacomb.util.DiffPrint.Base

print_context_label(String, File, String) - Method in class org.catacomb.util.DiffPrint.ContextPrint

print_function(Object[], int) - Method in class org.catacomb.util.DiffPrint.ContextPrint

print_header(String, String) - Method in class org.catacomb.util.DiffPrint.Base

Print the script header which identifies the files compared.

print_header(String, String) - Method in class org.catacomb.util.DiffPrint.ContextPrint

print_header(String, String) - Method in class org.catacomb.util.DiffPrint.UnifiedPrint

print_hunk(Diff.change) - Method in class org.catacomb.util.DiffPrint.Base

print_hunk(Diff.change) - Method in class org.catacomb.util.DiffPrint.ContextPrint

print_hunk(Diff.change) - Method in class org.catacomb.util.DiffPrint.EdPrint

Print a hunk of an ed diff

print_hunk(Diff.change) - Method in class org.catacomb.util.DiffPrint.NormalPrint

Print a hunk of a normal diff.

print_hunk(Diff.change) - Method in class org.catacomb.util.DiffPrint.UnifiedPrint

print_number_range(char, int, int) - Method in class org.catacomb.util.DiffPrint.Base

Print a pair of line numbers with SEPCHAR, translated for file FILE.

print_number_range(int, int) - Method in class org.catacomb.util.DiffPrint.UnifiedPrint

print_script(Diff.change) - Method in class org.catacomb.util.DiffPrint.Base

Divide SCRIPT into pieces by calling HUNKFUN and print each piece with PRINTFUN.

Printable - Interface in org.catacomb.be

printArray(String, Printable[], int) - Static method in class org.catacomb.datalish.array.Array

printAvailable() - Method in class org.catacomb.druid.build.DruidTargetStore

printAvailable() - Method in interface org.catacomb.interlish.structure.TargetStore

printconc(double[][]) - Method in class org.textensor.stochdiff.reduce.Reducer

PrintEffect - Class in org.catacomb.druid.blocks

PrintEffect() - Constructor for class org.catacomb.druid.blocks.PrintEffect

printIDs() - Method in class org.catacomb.interlish.content.KeyedList

printIntro() - Method in class org.catacomb.interlish.version.BuildInfo

printLink(String, NetMapLink, int) - Method in class org.catacomb.numeric.difnet.calc.OrderedNetMap

PrintLogger - Class in org.catacomb.interlish.report

PrintLogger() - Constructor for class org.catacomb.interlish.report.PrintLogger

printNet() - Method in class org.catacomb.numeric.difnet.calc.NetDiffuser

printNet(NetState) - Method in class org.catacomb.numeric.difnet.calc.NetDiffuser

PrintProgressReport - Class in org.catacomb.interlish.report

PrintProgressReport() - Constructor for class org.catacomb.interlish.report.PrintProgressReport

printRot() - Method in class org.catacomb.graph.gui.WorldTransform

printSizes(Component) - Static method in class org.catacomb.druid.swing.SpringUtilities

A debugging utility that prints to stdout the component's minimum, preferred, and maximum sizes.

printViews() - Method in class org.catacomb.graph.gui.ViewSet

PRIVATE - Static variable in class org.catacomb.act.FieldSignature

Privatizable - Interface in org.catacomb.interlish.structure

privatize() - Method in interface org.catacomb.interlish.structure.Privatizable

ProbabilityTable - Class in org.textensor.stochdiff.numeric.stochastic

ProbabilityTable() - Constructor for class org.textensor.stochdiff.numeric.stochastic.ProbabilityTable

process() - Method in class org.catacomb.dataview.BatchImageMaker

process() - Method in class org.catacomb.movie.gif.NeuQuant

ProcessWatcher - Interface in org.catacomb.interlish.structure

prod(double[]) - Static method in class org.catacomb.numeric.array.MDA

prod(double, double[]) - Static method in class org.catacomb.numeric.array.MDA

prod(double[], double[]) - Static method in class org.catacomb.numeric.array.MDA

prod(double[][], double[][]) - Static method in class org.catacomb.numeric.array.MDA

prod(Matrix) - Method in class org.catacomb.numeric.math.Matrix

prod(Matrix) - Method in class org.textensor.stochdiff.numeric.math.Matrix

Producer - Interface in org.catacomb.interlish.structure

ProducerConsumerBoard - Class in org.catacomb.druid.market

ProducerConsumerBoard() - Constructor for class org.catacomb.druid.market.ProducerConsumerBoard

producers - Variable in class org.catacomb.druid.market.ProducerConsumerBoard

Product - Class in org.textensor.stochdiff.model

Product() - Constructor for class org.textensor.stochdiff.model.Product

productIndices - Variable in class org.textensor.stochdiff.numeric.chem.ReactionTable

productIndices - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

productIndices - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

productionMatrix - Variable in class org.textensor.stochdiff.numeric.chem.ReactionTable

products - Variable in class org.textensor.stochdiff.model.Reaction

productStochiometry - Variable in class org.textensor.stochdiff.numeric.chem.ReactionTable

productStochiometry - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

productStochiometry - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

profHM - Variable in class org.textensor.stochdiff.disc.SpineLocator

profile - Variable in class org.textensor.stochdiff.numeric.morph.SpinePopulation

progrept - Variable in class org.catacomb.serial.xml.XMLReader

progressBar - Variable in class org.catacomb.druid.swing.DListProgressRenderer

progressed(RunProcess) - Method in interface org.catacomb.interlish.structure.ProcessWatcher

Progressed - Interface in org.catacomb.interlish.structure

progressFraction - Variable in class org.catacomb.serial.xml.XMLReader

progressFraction - Variable in class org.textensor.xml.XMLReader

progressLabel - Variable in class org.catacomb.druid.swing.DListProgressRenderer

progressLogController - Static variable in class org.catacomb.druid.dialog.Dialoguer

ProgressLogDialogController - Class in org.catacomb.druid.dialog

ProgressLogDialogController() - Constructor for class org.catacomb.druid.dialog.ProgressLogDialogController

ProgressReport - Class in org.catacomb.druid.blocks

ProgressReport() - Constructor for class org.catacomb.druid.blocks.ProgressReport

ProgressReport - Interface in org.catacomb.interlish.structure

progSelect() - Method in class org.catacomb.druid.swing.DChoice

project(double, double, double) - Method in class org.catacomb.graph.gui.WorldTransform

properties - Variable in class org.textensor.stochdiff.neuroml.segment

propertyType - Variable in class org.catacomb.druid.xtext.data.XTypeStore

propogateChange(Object) - Method in class org.catacomb.druid.xtext.base.DMItem

PROTO - Static variable in class org.catacomb.graph.arbor.SegmentGraphPoint

protoPointColor - Variable in class org.catacomb.graph.drawing.Shape

Provider - Interface in org.catacomb.druid.event

PROVIDER - Static variable in class org.catacomb.interlish.reflect.ObjectBuilder

Provider - Interface in org.catacomb.interlish.structure

providers - Variable in class org.catacomb.druid.market.ProducerConsumerBoard

proximal - Variable in class org.textensor.stochdiff.neuroml.segment

pruneFrom(String, int, double) - Method in class org.textensor.stochdiff.ResultWriter

pruneFromCount(int, double) - Method in class org.textensor.stochdiff.ResultWriter

pSharedOut - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

pSharedOut - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

pT - Variable in class org.catacomb.druid.swing.RolloverEffect

pT - Variable in class org.catacomb.graph.gui.RolloverEffect

pubDxDpix() - Method in class org.catacomb.graph.gui.WorldTransform

pubDyDpix() - Method in class org.catacomb.graph.gui.WorldTransform

PUBLIC - Static variable in class org.catacomb.act.FieldSignature

pubPixDx(double) - Method in class org.catacomb.graph.gui.WorldTransform

pubPixDy(double) - Method in class org.catacomb.graph.gui.WorldTransform

pubPowx(double) - Method in class org.catacomb.graph.gui.WorldTransform

pubPowy(double) - Method in class org.catacomb.graph.gui.WorldTransform

pubWopx(int) - Method in class org.catacomb.graph.gui.WorldTransform

pubWopy(int) - Method in class org.catacomb.graph.gui.WorldTransform

pulseOverlap(double, double, double, double) - Method in class org.textensor.stochdiff.numeric.chem.StimulationTable

PUNCTUATION - Static variable in class org.catacomb.druid.xtext.canvas.TextBoard

PunctuationBlock - Class in org.catacomb.druid.xtext.base

PunctuationBlock() - Constructor for class org.catacomb.druid.xtext.base.PunctuationBlock

push(double, double) - Method in class org.catacomb.datalish.Box

push(double[], double[]) - Method in class org.catacomb.datalish.Box

push(Position) - Method in class org.catacomb.datalish.Box

push(Box) - Method in class org.catacomb.dataview.LinePlotElement

push(Box) - Method in class org.catacomb.dataview.PlotElement

push(Box) - Method in class org.catacomb.dataview.PointsPlotElement

push(Box) - Method in class org.catacomb.dataview.PolygonPlotElement

push(Box) - Method in class org.catacomb.dataview.RasterRowElement

push(Box) - Method in class org.catacomb.dataview.StringPlotElement

push(double, double) - Method in class org.catacomb.graph.gui.Painter

push(V) - Method in class org.catacomb.interlish.content.Stack

push3D(double, double, double) - Method in class org.catacomb.graph.gui.Painter

pushBox(Box) - Method in class org.catacomb.datalish.SpriteData

pushBox(Box) - Method in class org.catacomb.datalish.SpritePart

pushBox(Box) - Method in class org.catacomb.dataview.build.Displayable

pushBox(Box) - Method in class org.catacomb.dataview.build.DisplayablePoint

pushBox(Box) - Method in class org.catacomb.dataview.build.Line

pushBox(Box) - Method in class org.catacomb.dataview.display.Displayable

pushBox(Box) - Method in class org.catacomb.dataview.display.PolyLine

pushX(double[]) - Method in class org.catacomb.datalish.Box

pushX(double[], int) - Method in class org.catacomb.datalish.Box

pushY(double) - Method in class org.catacomb.datalish.Box

pushY(double[]) - Method in class org.catacomb.datalish.Box

pushY(double[], int) - Method in class org.catacomb.datalish.Box

put(String, V) - Method in class org.catacomb.interlish.content.KeyedList

putNew(String, V) - Method in class org.catacomb.interlish.content.KeyedList

pw - Variable in class org.catacomb.druid.swing.DFrame

pwCanvas - Variable in class org.catacomb.graph.gui.DataDisplay

pwCanvas - Variable in class org.catacomb.graph.gui.DrawingCanvas

pwCanvas - Variable in class org.catacomb.graph.gui.MovieDisplay

px - Variable in class org.catacomb.druid.swing.DFrame

px - Variable in class org.textensor.vis.IcingPoint

py - Variable in class org.catacomb.druid.swing.DFrame

py - Variable in class org.textensor.vis.IcingPoint

pz - Variable in class org.textensor.vis.IcingPoint

Q

Q10 - Variable in class org.textensor.stochdiff.model.Reaction

qpowx(double) - Method in class org.catacomb.graph.gui.WorldTransform

qpowy(double) - Method in class org.catacomb.graph.gui.WorldTransform

qualifier - Variable in class org.catacomb.act.Classdef

QuantifiedListValue - Class in org.catacomb.interlish.content

QuantifiedListValue() - Constructor for class org.catacomb.interlish.content.QuantifiedListValue

QuantifiedListValue(NVPair[]) - Constructor for class org.catacomb.interlish.content.QuantifiedListValue

Quantity - Annotation Type in org.catacomb.numeric.data

QuantityDA - Annotation Type in org.catacomb.numeric.data

quantityHM - Variable in class org.catacomb.interlish.content.QuantityList

quantityLabel - Variable in class org.catacomb.druid.swing.DListQuantityRenderer

QuantityList<V> - Class in org.catacomb.interlish.content

QuantityList() - Constructor for class org.catacomb.interlish.content.QuantityList

quantityTF - Variable in class org.catacomb.druid.swing.DListQuantityRenderer

questionDialogController - Static variable in class org.catacomb.druid.dialog.Dialoguer

QuestionDialogController - Class in org.catacomb.druid.dialog

QuestionDialogController() - Constructor for class org.catacomb.druid.dialog.QuestionDialogController

quietGet(String) - Method in class org.catacomb.druid.build.DruidTargetStore

quietSuperceded(V) - Method in class org.catacomb.interlish.content.KeyedList

QuietWriter - Interface in org.catacomb.interlish.structure

quoteStrings - Variable in class org.catacomb.serial.xml.XMLWriter

quoteStrings - Variable in class org.textensor.xml.XMLWriter

R

r - Variable in class org.catacomb.dataview.formats.SWCDisplay.Node

r - Variable in class org.catacomb.numeric.difnet.CellPoint

r - Variable in class org.textensor.stochdiff.model.MorphPoint

r - Variable in class org.textensor.stochdiff.numeric.morph.TreePoint

r - Variable in class org.textensor.vis.IcingPoint

r_catalyst - Variable in class org.textensor.stochdiff.model.Reaction

r_colorTable - Variable in class org.catacomb.graph.gui.DisplayStyleSet

r_parent - Variable in class org.catacomb.graph.drawing.Shape

r_peerPoint - Variable in class org.textensor.stochdiff.model.MorphPoint

r_products - Variable in class org.textensor.stochdiff.model.Reaction

r_profile - Variable in class org.textensor.stochdiff.model.SpineType

r_reactants - Variable in class org.textensor.stochdiff.model.Reaction

r_segment - Variable in class org.textensor.stochdiff.model.MorphPoint

r_spineType - Variable in class org.textensor.stochdiff.model.SpineAllocation

radbias - Static variable in class org.catacomb.movie.gif.NeuQuant

radbiasshift - Static variable in class org.catacomb.movie.gif.NeuQuant

radHM - Variable in class org.textensor.stochdiff.disc.CurvedVolumeSlice

radiiDiffer(MorphPoint) - Method in class org.textensor.stochdiff.model.EndPoint

RadioButtons - Class in org.catacomb.druid.blocks

RadioButtons() - Constructor for class org.catacomb.druid.blocks.RadioButtons

radius - Variable in class org.catacomb.graph.arbor.SegmentGraphPoint

radius - Variable in class org.catacomb.numeric.difnet.model.BasicStructureNode

radius - Variable in class org.catacomb.numeric.mesh.DifMeshPoint

radius - Variable in class org.textensor.stochdiff.numeric.morph.VolumeSlice

radiusa - Variable in class org.textensor.stochdiff.disc.CurvedVolumeSlice

radiusb - Variable in class org.textensor.stochdiff.disc.CurvedVolumeSlice

radiusbias - Static variable in class org.catacomb.movie.gif.NeuQuant

radiusbiasshift - Static variable in class org.catacomb.movie.gif.NeuQuant

radiusdec - Static variable in class org.catacomb.movie.gif.NeuQuant

radpower - Variable in class org.catacomb.movie.gif.NeuQuant

RAISED - Static variable in class org.catacomb.druid.swing.BorderUtil

RAISED - Static variable in class org.catacomb.druid.swing.RolloverEffect

RAISED - Static variable in class org.catacomb.graph.gui.RolloverEffect

random() - Method in class org.catacomb.numeric.math.Matrix

Random - Class in org.catacomb.numeric.math

Random() - Constructor for class org.catacomb.numeric.math.Random

random() - Static method in class org.catacomb.numeric.math.Random

random - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

random() - Method in class org.textensor.stochdiff.numeric.math.Matrix

random() - Method in class org.textensor.stochdiff.numeric.math.MersenneTwister

random() - Static method in class org.textensor.stochdiff.numeric.math.NRRandom

random - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

randomAppearances - Variable in class org.textensor.vis.SceneGraphBuilder

randomColor(Random, double) - Method in class org.textensor.vis.SceneGraphBuilder

randomFill() - Method in class org.catacomb.serial.quickxml.Element

randomIndexFromColumn(int) - Method in class org.catacomb.numeric.math.Matrix

randomIndexFromColumn(int, double) - Method in class org.catacomb.numeric.math.Matrix

randomIndexFromColumn(int) - Method in class org.textensor.stochdiff.numeric.math.Matrix

randomIndexFromColumn(int, double) - Method in class org.textensor.stochdiff.numeric.math.Matrix

randomIndexFromOffsetColumn(int, int) - Method in class org.catacomb.numeric.math.Matrix

randomIndexFromOffsetColumn(int, int) - Method in class org.textensor.stochdiff.numeric.math.Matrix

randomInit() - Method in class org.catacomb.graph.drawing.FixedDrawing

randomise() - Method in class org.catacomb.numeric.math.Matrix

randomise() - Method in class org.textensor.stochdiff.numeric.math.Matrix

RandomMath - Class in org.textensor.stochdiff.numeric.math

RandomMath() - Constructor for class org.textensor.stochdiff.numeric.math.RandomMath

randomNumberTimes() - Static method in class org.textensor.stochdiff.numeric.stochastic.TimeTests

rangeChange(int) - Method in class org.catacomb.graph.gui.WorldTransform

rangeChanged(int, double[]) - Method in class org.catacomb.graph.gui.DataDisplay

rangeChanged(int, double[]) - Method in interface org.catacomb.graph.gui.RangeListener

rangeChanged(int, double[]) - Method in class org.catacomb.graph.gui.XAxisCanvas

rangeChanged(int, double[]) - Method in class org.catacomb.graph.gui.YAxisCanvas

rangeChanged() - Method in interface org.catacomb.interlish.structure.RangeWatcher

rangeDelta - Variable in class org.catacomb.interlish.content.ColorTable

rangeEditable - Variable in class org.catacomb.druid.swing.DInt

RangeListener - Interface in org.catacomb.graph.gui

rangeListeners - Variable in class org.catacomb.graph.gui.WorldTransform

rangeMax - Variable in class org.catacomb.interlish.content.ColorTable

rangeMin - Variable in class org.catacomb.interlish.content.ColorTable

rangesDiffer(double, double, double, double, double) - Method in class org.catacomb.datalish.Box

rangeWatcher - Variable in class org.catacomb.graph.gui.DataDisplay

RangeWatcher - Interface in org.catacomb.interlish.structure

RasterRowElement - Class in org.catacomb.dataview

RasterRowElement(double[], double[], double, double, double, double) - Constructor for class org.catacomb.dataview.RasterRowElement

rate - Variable in class org.textensor.stochdiff.model.InjectionStim

rates - Variable in class org.textensor.stochdiff.numeric.chem.ReactionTable

rates - Variable in class org.textensor.stochdiff.numeric.chem.StimulationTable

rates - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

rates - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

RAW - Static variable in interface org.catacomb.interlish.structure.StateProcess

rawHM - Variable in class org.catacomb.dataview.read.CustomJarReader

rbPanel - Variable in class org.catacomb.druid.gui.edit.DruExpandingTextArea

rcol(Random, double) - Method in class org.textensor.vis.SceneGraphBuilder

rcx - Variable in class org.catacomb.graph.gui.RollHandler

rcy - Variable in class org.catacomb.graph.gui.RollHandler

rcz - Variable in class org.catacomb.graph.gui.RollHandler

reacStep(double[], double, double[]) - Method in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

Reactant - Class in org.textensor.stochdiff.model

Reactant() - Constructor for class org.textensor.stochdiff.model.Reactant

reactantIndices - Variable in class org.textensor.stochdiff.numeric.chem.ReactionTable

reactantIndices - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

reactantIndices - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

reactants - Variable in class org.textensor.stochdiff.model.Reaction

reactantStochiometry - Variable in class org.textensor.stochdiff.numeric.chem.ReactionTable

reactantStochiometry - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

reactantStochiometry - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

Reaction - Class in org.textensor.stochdiff.model

Reaction() - Constructor for class org.textensor.stochdiff.model.Reaction

reactionHM - Variable in class org.textensor.stochdiff.model.ReactionScheme

reactions - Variable in class org.textensor.stochdiff.model.ReactionScheme

ReactionScheme - Class in org.textensor.stochdiff.model

ReactionScheme() - Constructor for class org.textensor.stochdiff.model.ReactionScheme

reactionScheme - Variable in class org.textensor.stochdiff.model.SDRun

reactionSchemeFile - Variable in class org.textensor.stochdiff.model.SDRun

reactionTable - Variable in class org.textensor.stochdiff.numeric.BaseCalc

ReactionTable - Class in org.textensor.stochdiff.numeric.chem

ReactionTable(int, int) - Constructor for class org.textensor.stochdiff.numeric.chem.ReactionTable

READ - Static variable in interface org.catacomb.act.BlockSignature

read(File) - Method in interface org.catacomb.dataview.formats.DataHandler

read(File) - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

read() - Method in class org.catacomb.dataview.formats.MeshDataReader

read(File) - Method in class org.catacomb.dataview.formats.MeshSummary

read(File) - Method in class org.catacomb.dataview.formats.PolyLineHandler

read(File) - Method in class org.catacomb.dataview.formats.SWCDisplay

read(File) - Method in class org.catacomb.dataview.formats.TableDataHandler

read(byte[]) - Static method in class org.catacomb.dataview.read.NumericDataRW

read(InputStream) - Static method in class org.catacomb.dataview.read.NumericDataRW

read(String) - Static method in class org.catacomb.serial.ElementXMLReader

read(String) - Method in class org.catacomb.serial.xml.XMLReader

read(File) - Static method in class org.textensor.stochdiff.inter.ModelReader

read() - Method in class org.textensor.vis.ElementReader

read(String) - Method in class org.textensor.xml.XMLReader

readableRegularize(String) - Static method in class org.catacomb.util.StringUtil

readAll(byte[]) - Method in class org.catacomb.dataview.read.CustomJarReader

readAttributes(String, String[][]) - Method in class org.catacomb.xdoc.TextTagger

readBlock(String, BufferedReader) - Method in interface org.catacomb.dataview.formats.DataReader

readBlock(String, BufferedReader) - Method in class org.catacomb.dataview.formats.MeshDataReader

readBlock(String, BufferedReader) - Method in class org.catacomb.dataview.formats.TableDataReader

readButton(MouseEvent) - Method in class org.catacomb.graph.gui.Mouse

readBytes(InputStream) - Method in class org.catacomb.dataview.read.CustomJarReader

readBytes(File) - Static method in class org.catacomb.util.FileUtil

readBytes(URL) - Static method in class org.catacomb.util.NetUtil

readBytes(File) - Static method in class org.textensor.util.FileUtil

readClassRole(ClassRole) - Method in class org.catacomb.druid.load.DruidContentLoader

readColors() - Static method in class org.catacomb.druid.color.StandardPalette

readDIS(DataInputStream) - Static method in class org.catacomb.dataview.read.NumericDataRW

readDoubleArray(String) - Static method in class org.catacomb.interlish.reflect.Narrower

readDoubleArray(String) - Static method in class org.catacomb.serial.DataIO

readDoubleArray(String) - Static method in class org.textensor.xml.Narrower

readElement(String) - Static method in class org.catacomb.serial.Deserializer

readElement(File) - Method in class org.catacomb.serial.ElementImporter

readFieldIntoParent(XMLTokenizer, Object, XMLToken) - Method in class org.catacomb.serial.xml.XMLReader

readFieldIntoParent(XMLTokenizer, Object, XMLToken) - Method in class org.textensor.xml.XMLReader

readFile(File, XMLReader) - Static method in class org.textensor.stochdiff.inter.ModelReader

readFirstLine(File) - Static method in class org.catacomb.util.FileUtil

readFirstLine(File) - Static method in class org.textensor.util.FileUtil

readFromString(String) - Method in class org.catacomb.serial.xml.XMLReader

readFromString(String) - Method in class org.textensor.xml.XMLReader

readGridConcs(BufferedReader, int, int) - Method in class org.catacomb.dataview.formats.MeshDataReader

readHeader(File, int) - Static method in class org.catacomb.util.FileUtil

readHeader(URL, int) - Static method in class org.catacomb.util.NetUtil

readHeader(File, int) - Static method in class org.textensor.util.FileUtil

readInitialState(String, int, int, String[]) - Method in class org.textensor.stochdiff.numeric.BaseCalc

readInputStream(InputStream) - Static method in class org.catacomb.icon.splash.Splasher

readInputStream(Logger, InputStream) - Static method in class org.catacomb.interlish.util.JUtil

readMesh(BufferedReader, int) - Method in class org.catacomb.dataview.formats.MeshDataReader

readObject(String) - Method in class org.catacomb.druid.load.DruidContentLoader

readObject(String, String) - Method in class org.catacomb.druid.load.DruidContentLoader

readObject(String) - Method in interface org.catacomb.interlish.service.ContentLoader

readObject(String, String) - Static method in class org.catacomb.serial.ReflectionXMLReader

readObject(String) - Method in class org.catacomb.serial.xml.XMLReader

readObject(String) - Method in class org.textensor.xml.XMLReader

readPerimiter(String) - Static method in class org.catacomb.graph.gui.Iconizer

readPosition(Mouse) - Method in class org.catacomb.graph.gui.BoxSelectionHandler

readPosition(MouseEvent) - Method in class org.catacomb.graph.gui.Mouse

readPressPosition(MouseEvent) - Method in class org.catacomb.graph.gui.Mouse

readResource(String) - Method in class org.catacomb.serial.om.OmFileReader

readResource(String) - Method in class org.catacomb.serial.om.OmFileWriter

readResourceRole(ResourceRole) - Method in class org.catacomb.druid.load.DruidContentLoader

readRow(StringTokenizer, int) - Static method in class org.catacomb.numeric.data.AsciiIO

readRow(String) - Static method in class org.catacomb.numeric.data.AsciiIO

readSibling(String) - Method in class org.textensor.stochdiff.ResultWriter

readState(StateLink) - Method in class org.catacomb.numeric.difnet.calc.NetMapLink

readState(StateNode, double) - Method in class org.catacomb.numeric.difnet.calc.NetMapNode

readState(NetState) - Method in class org.catacomb.numeric.difnet.calc.OrderedNetMap

readState(String) - Static method in class org.textensor.stochdiff.inter.StateReader

readStateString(String) - Static method in class org.textensor.stochdiff.inter.StateReader

readStringArray(Element) - Method in class org.catacomb.interlish.reflect.ObjectBuilder

readStringFromFile(File) - Static method in class org.catacomb.graph.gui.Iconizer

readStringFromFile(File) - Static method in class org.catacomb.util.FileUtil

readStringFromFile(File) - Static method in class org.textensor.util.FileUtil

readStringFromURL(URL) - Static method in class org.catacomb.util.NetUtil

readStringFromURL(String, ProgressReport) - Static method in class org.catacomb.util.NetUtil

readStringFromURL(URL, ProgressReport) - Static method in class org.catacomb.util.NetUtil

readStringRow(StringTokenizer, int) - Static method in class org.catacomb.numeric.data.AsciiIO

readTable(File) - Static method in class org.catacomb.numeric.data.AsciiIO

readToken(XMLTokenizer) - Method in class org.catacomb.serial.xml.XMLReader

readToken(XMLTokenizer) - Method in class org.textensor.xml.XMLReader

READY - Static variable in interface org.catacomb.interlish.structure.StateProcess

ready - Variable in class org.textensor.stochdiff.ResultWriter

readyIcon - Variable in class org.catacomb.druid.swing.DListProgressRenderer

REAL - Static variable in class org.catacomb.graph.arbor.SegmentGraphPoint

realindexes - Variable in class org.catacomb.util.Diff.file_data

Vector mapping virtual line numbers (not counting discarded lines) to real ones (counting those lines).

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.AbleEffect

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.Application

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.AutonomousDialog

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.AutonomousPanel

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.BaseEffect

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.CardSelectionEffect

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.CheckboxMenuItem

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.CloseEffect

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.Dialog

realize(DruFrame, Context, GUIPath) - Method in class org.catacomb.druid.blocks.Dialog

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.EditorWindow

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.Frame

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.InitialInfo

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.Insert

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.Menu

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.MenuBar

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.MenuItem

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.Panel

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.PrintEffect

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.Requisite

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.Separator

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.SplitSeparator

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.SuggestEffect

realize(Context, GUIPath) - Method in class org.catacomb.druid.blocks.WindowEditEffect

realize(Context, GUIPath) - Method in interface org.catacomb.druid.build.Realizer

realize() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

realizeEffects(ArrayList<BaseEffect>, Context, GUIPath) - Method in class org.catacomb.druid.blocks.Panel

realizePanel(Context, GUIPath) - Method in class org.catacomb.druid.blocks.SinglePanelContainer

realizer - Variable in class org.catacomb.druid.blocks.CollapsiblePanel

realizer - Variable in class org.catacomb.druid.blocks.SinglePanelContainer

Realizer - Interface in org.catacomb.druid.build

realizers - Variable in class org.catacomb.druid.blocks.KitPanel

realizers - Variable in class org.catacomb.druid.blocks.MultiPanel

realizers - Variable in class org.catacomb.druid.blocks.PanelDesigns

realizers - Variable in class org.catacomb.druid.gui.base.DruKitPanel

reallyBuildVewable(Object) - Method in class org.textensor.vis.Icing3DViewer

reallyRefreshDecoration(Object) - Method in class org.textensor.vis.Icing3DViewer

realPaint(Graphics) - Method in class org.catacomb.druid.swing.DFloatSlider

realPaint(Graphics) - Method in class org.catacomb.druid.swing.DSlider

rebuildManifest(File) - Static method in class org.catacomb.druid.manifest.DecManifest

recAdd(VolumeSlice, TreePoint) - Method in class org.textensor.stochdiff.disc.DiscBoxer

recAdd(CurvedVolumeSlice, TreePoint) - Method in class org.textensor.stochdiff.disc.DiscSplitter

recAdd(VolumeLine, TreePoint) - Method in class org.textensor.stochdiff.disc.LineBoxer

recAppend(StringBuffer, TreePoint, int) - Method in class org.textensor.stochdiff.numeric.morph.TreeWriter

RECEIVE - Static variable in interface org.catacomb.act.BlockSignature

receiveInfo(String) - Method in class org.catacomb.druid.build.InfoAggregator

receiveInfo(String, String) - Method in class org.catacomb.druid.build.InfoAggregator

receiveInfo(String) - Method in class org.catacomb.druid.gui.base.DruInfoPanel

receiveInfo(String, String) - Method in class org.catacomb.druid.gui.base.DruInfoPanel

receiveInfo(String) - Method in interface org.catacomb.interlish.structure.InfoReceiver

receiveInfo(String, String) - Method in interface org.catacomb.interlish.structure.InfoReceiver

receivePaste(Copyable) - Method in interface org.catacomb.interlish.structure.PasteDestination

Receiver - Interface in org.catacomb.interlish.structure

receivers - Variable in class org.catacomb.druid.market.ProducerConsumerBoard

ReceivingController - Class in org.catacomb.druid.build

ReceivingController() - Constructor for class org.catacomb.druid.build.ReceivingController

recHighlight() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

recHighlightPath() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

recindex(NetMapNode[], int[], NetMapLink[][], NetMapNode) - Method in class org.catacomb.numeric.difnet.calc.OrderedNetMap

recIndices - Variable in class org.catacomb.numeric.difnet.model.BasicNetRecorder

recLabels - Variable in class org.catacomb.numeric.difnet.model.BasicNetRecorder

recMerge(MeshPoint, double, double, double) - Static method in class org.catacomb.numeric.mesh.Discretizer

recMerge(TreePoint, double, double, double) - Method in class org.textensor.stochdiff.disc.SegmentMerger

recognizer - Variable in class org.catacomb.druid.swing.dnd.RegionDragSource

recognizer - Variable in class org.catacomb.druid.swing.DTreeDragSource

record() - Method in class org.catacomb.dataview.FrameController

record() - Method in class org.catacomb.dataview.gui.FramePlayerController

record() - Method in class org.catacomb.druid.chunk.MoviePlayController

record(File, Logger) - Method in class org.catacomb.graph.gui.MovieDisplay

record(File, Logger) - Method in interface org.catacomb.interlish.structure.MovieOperator

recordRange - Variable in class org.catacomb.graph.gui.WorldTransform

rect2rvprod(double[], double[], double[]) - Method in class org.catacomb.numeric.math.Matrix

rect2rvprod(double[], double[], double[]) - Method in class org.textensor.stochdiff.numeric.math.Matrix

Rectangle - Class in org.catacomb.graph.drawing

Rectangle() - Constructor for class org.catacomb.graph.drawing.Rectangle

Rectangle(double, double, double, double) - Constructor for class org.catacomb.graph.drawing.Rectangle

RECTANGLE - Static variable in class org.catacomb.graph.drawing.ShapeSymmetry

recurse - Variable in class org.catacomb.serial.SerializationContext

recurseAll() - Method in class org.catacomb.serial.SerializationContext

RED - Static variable in class org.catacomb.numeric.phys.Phys

rediscretize(double, int) - Method in class org.catacomb.numeric.mesh.DifMesh

Reduce - Class in org.textensor.stochdiff.reduce

Reduce() - Constructor for class org.textensor.stochdiff.reduce.Reduce

reduce() - Method in class org.textensor.stochdiff.reduce.Reducer

Reducer - Class in org.textensor.stochdiff.reduce

Reducer(SDRun, SDState) - Constructor for class org.textensor.stochdiff.reduce.Reducer

ReduceTest - Class in org.textensor.stochdiff.examples.restart

ReduceTest() - Constructor for class org.textensor.stochdiff.examples.restart.ReduceTest

redundant() - Method in class org.textensor.stochdiff.model.MorphPoint

ref - Variable in class org.catacomb.druid.swing.ToggleItem

ref - Variable in class org.catacomb.graph.drawing.VectorIcon

refBuildFromElement(Object, Element) - Method in class org.catacomb.interlish.reflect.ObjectBuilder

referentHM - Variable in class org.catacomb.serial.SerializationContext

REFLECT_PUBLIC - Static variable in class org.catacomb.act.FieldSignature

ReflectionConstructor - Class in org.catacomb.interlish.reflect

ReflectionConstructor() - Constructor for class org.catacomb.interlish.reflect.ReflectionConstructor

ReflectionConstructor(String) - Constructor for class org.catacomb.interlish.reflect.ReflectionConstructor

ReflectionInstantiator - Class in org.textensor.xml

ReflectionInstantiator() - Constructor for class org.textensor.xml.ReflectionInstantiator

ReflectionInstantiator(String) - Constructor for class org.textensor.xml.ReflectionInstantiator

ReflectionWrapper - Class in org.catacomb.interlish.reflect

ReflectionWrapper(String, String) - Constructor for class org.catacomb.interlish.reflect.ReflectionWrapper

ReflectionXMLReader - Class in org.catacomb.serial

ReflectionXMLReader() - Constructor for class org.catacomb.serial.ReflectionXMLReader

Reflector - Class in org.catacomb.serial

Reflector() - Constructor for class org.catacomb.serial.Reflector

Reflector - Class in org.catacomb.util

Reflector() - Constructor for class org.catacomb.util.Reflector

reframe() - Method in class org.catacomb.druid.chunk.MouseModeController

reframe() - Method in class org.catacomb.druid.gui.base.DruDataDisplay

reframe() - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

reframe() - Method in class org.catacomb.druid.gui.base.DruMovieDisplay

reframe() - Method in class org.catacomb.graph.gui.DataDisplay

reframe() - Method in class org.catacomb.graph.gui.DrawingCanvas

reframe() - Method in class org.catacomb.graph.gui.MovieDisplay

reframe(Box) - Method in class org.catacomb.graph.gui.Painter

reframe() - Method in class org.catacomb.graph.gui.PickWorldCanvas

reframe() - Method in class org.catacomb.graph.gui.WorldCanvas

reframe(Box) - Method in class org.catacomb.graph.gui.WorldTransform

reframeBox - Variable in class org.catacomb.graph.gui.WorldCanvas

refreshDecoration(Object) - Method in class org.textensor.vis.Icing3DViewer

refreshDecoration(Object) - Method in interface org.textensor.vis.Visualizer

refs - Variable in class org.catacomb.druid.swing.dnd.RegionStore

Region - Class in org.catacomb.druid.swing.dnd

Region(int, int, int, int, String, Object, int) - Constructor for class org.catacomb.druid.swing.dnd.Region

Region(int[], String, Object, int) - Constructor for class org.catacomb.druid.swing.dnd.Region

region - Variable in class org.textensor.stochdiff.model.ConcentrationSet

region - Variable in class org.textensor.stochdiff.model.MaxElementSide

region - Variable in class org.textensor.stochdiff.model.OutputSet

region - Variable in class org.textensor.stochdiff.model.Segment

region - Variable in class org.textensor.stochdiff.model.SpineAllocation

region - Variable in class org.textensor.stochdiff.model.SurfaceDensitySet

region - Variable in class org.textensor.stochdiff.numeric.morph.VolumeElement

region_list - Variable in class org.textensor.stochdiff.numeric.BaseCalc

RegionBoard - Class in org.catacomb.druid.swing.dnd

RegionBoard(DTextCanvas) - Constructor for class org.catacomb.druid.swing.dnd.RegionBoard

regionBoard - Variable in class org.catacomb.druid.swing.dnd.RegionDragSource

regionBoard - Variable in class org.catacomb.druid.swing.dnd.RegionDropTarget

regionClass - Variable in class org.textensor.stochdiff.model.Section

regionClassWith(TreePoint) - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

regionClicked(Region) - Method in class org.catacomb.druid.swing.dnd.RegionBoard

regionClicked(Region) - Method in interface org.catacomb.druid.swing.dnd.RegionListener

regionClicked(Region) - Method in class org.catacomb.druid.xtext.canvas.TextBoard

regionClicked(Region) - Method in class org.catacomb.druid.xtext.edit.TrashBoard

regionClicked(Region) - Method in class org.catacomb.druid.xtext.edit.XRelationTree

regionClicked(Region) - Method in class org.catacomb.druid.xtext.edit.XTypeTree

regionConcentrations - Variable in class org.textensor.stochdiff.numeric.BaseCalc

RegionDragSource - Class in org.catacomb.druid.swing.dnd

RegionDragSource(RegionBoard, int) - Constructor for class org.catacomb.druid.swing.dnd.RegionDragSource

RegionDropTarget - Class in org.catacomb.druid.swing.dnd

RegionDropTarget(RegionBoard) - Constructor for class org.catacomb.druid.swing.dnd.RegionDropTarget

regionHM - Variable in class org.textensor.stochdiff.model.MorphPoint

regionHM - Variable in class org.textensor.stochdiff.numeric.morph.TreePoint

regionHM - Variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

regionLabels - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

regionLabels - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

regionLabels - Variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

regionLabels - Variable in class org.textensor.stochdiff.numeric.StaticCalc

regionLabels - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

regionListener - Variable in class org.catacomb.druid.swing.dnd.ClickableRegionStore

RegionListener - Interface in org.catacomb.druid.swing.dnd

regionPressed() - Method in class org.catacomb.graph.drawing.Shape

regionRefs - Variable in class org.catacomb.graph.gui.PickStore

regions - Variable in class org.catacomb.graph.gui.PickStore

regions - Variable in class org.textensor.stochdiff.disc.DiscretizedSpine

regions - Variable in class org.textensor.stochdiff.numeric.morph.SpineProfile

regionsOut - Variable in class org.textensor.stochdiff.numeric.BaseCalc

RegionsTest - Class in org.textensor.stochdiff.examples.regions

RegionsTest() - Constructor for class org.textensor.stochdiff.examples.regions.RegionsTest

RegionStore - Class in org.catacomb.druid.swing.dnd

RegionStore() - Constructor for class org.catacomb.druid.swing.dnd.RegionStore

regionSurfaceDensities - Variable in class org.textensor.stochdiff.numeric.BaseCalc

regression - Variable in class org.catacomb.numeric.function.AR1Noise

regs - Variable in class org.catacomb.druid.swing.dnd.RegionStore

regularize(String) - Static method in class org.catacomb.util.StringUtil

reinit() - Method in class org.textensor.stochdiff.numeric.StaticCalc

Related - Interface in org.catacomb.interlish.structure

relationHM - Variable in class org.catacomb.druid.xtext.data.PageDataStore

relationHM - Variable in class org.catacomb.druid.xtext.data.XTypeStore

RelationNode - Class in org.catacomb.druid.util.tree

RelationNode(Object, Related) - Constructor for class org.catacomb.druid.util.tree.RelationNode

relations - Variable in class org.catacomb.druid.swing.split.SplitterLayout

relations - Variable in class org.catacomb.druid.xtext.data.PageDataStore

relations - Variable in class org.catacomb.druid.xtext.data.XTypeStore

Relationship - Class in org.catacomb.interlish.structure

Relationship(Related, String) - Constructor for class org.catacomb.interlish.structure.Relationship

relationships - Variable in class org.catacomb.druid.util.examples.TreeItem

RelationTree - Class in org.catacomb.druid.util.tree

RelationTree(ArrayList<Related>) - Constructor for class org.catacomb.druid.util.tree.RelationTree

RelationTree(SingleParent) - Constructor for class org.catacomb.druid.util.tree.RelationTree

relationTypes - Variable in class org.catacomb.druid.util.tree.RelationTree

RELATIVE - Static variable in class org.catacomb.graph.drawing.FixedDrawingComponent

relativize(Position, double, Position) - Method in class org.catacomb.be.Position

release(Mouse) - Method in class org.catacomb.graph.gui.ClickZoomHandler

release(Mouse) - Method in class org.catacomb.graph.gui.MouseHandler

releasePeer() - Method in class org.catacomb.interlish.content.BooleanValue

releasePeer() - Method in class org.catacomb.interlish.content.DoubleValue

Relief - Class in org.catacomb.druid.swing

Relief() - Constructor for class org.catacomb.druid.swing.Relief

reload() - Method in class org.catacomb.dataview.gui.CCVizController

reload() - Method in class org.catacomb.dataview.gui.DViewController

relType - Variable in class org.catacomb.druid.xtext.data.XTypeStore

reluctantReframe() - Method in class org.catacomb.druid.gui.base.DruMovieDisplay

reluctantReframe() - Method in class org.catacomb.graph.gui.MovieDisplay

reluctantReframe() - Method in class org.catacomb.graph.gui.WorldCanvas

remaining - Variable in class org.catacomb.movie.gif.LZWEncoder

remove() - Method in class org.catacomb.druid.gui.edit.ExpandingTextAreaController

remove() - Method in class org.catacomb.druid.xtext.base.TextBlock

remove(XType) - Method in class org.catacomb.druid.xtext.data.XTypeStore

remove(XRelationType) - Method in class org.catacomb.druid.xtext.data.XTypeStore

remove(V) - Method in class org.catacomb.interlish.content.KeyedList

remove(String) - Method in class org.catacomb.interlish.content.KeyedList

removeActionListener(ActionListener) - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

removeAll() - Method in class org.catacomb.druid.gui.base.DruPanel

removeAll() - Method in class org.catacomb.druid.gui.base.DruSubcontainerPanel

removeAll() - Method in class org.catacomb.druid.swing.DPopLabel

removeAll(String) - Method in class org.catacomb.serial.quickxml.Element

removeAllDecoration() - Method in class org.textensor.vis.SceneGraphViewer

removeChangeListener(ChangeListener) - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

removeChild(ArrayListNode) - Method in class org.catacomb.druid.util.tree.ArrayListNode

removeChild(RelationNode) - Method in class org.catacomb.druid.util.tree.RelationNode

removeChild(TablePeer) - Method in class org.catacomb.graph.drawing.Shape

removeChild(TablePeer) - Method in interface org.catacomb.interlish.structure.TablePeer

removeChildListener() - Method in class org.catacomb.interlish.content.PrimitiveValue

removeDataWatcher(DataWatcher) - Method in class org.catacomb.numeric.data.NumDataStore

removeDComponent(DComponent) - Method in class org.catacomb.druid.gui.base.DruPanel

removeDComponent(DComponent) - Method in class org.catacomb.druid.swing.DPanel

removeDeadNeighbors() - Method in class org.catacomb.numeric.difnet.CellPoint

removeDeadNeighbors() - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

removeElement(int) - Method in class org.catacomb.serial.quickxml.Element

removeExtensionProto() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

removeItem(String) - Method in class org.catacomb.interlish.content.QuantifiedListValue

removeItem(int) - Method in class org.catacomb.interlish.content.QuantifiedListValue

removeItemListener(ItemListener) - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

removeKey(String) - Method in class org.catacomb.interlish.content.KeyedList

removeLayoutComponent(Component) - Method in class org.catacomb.druid.swing.split.SplitterLayout

removeLine() - Method in class org.catacomb.druid.gui.edit.DruListPanel

removeLine() - Method in class org.catacomb.druid.swing.DList

removeLine() - Method in class org.catacomb.druid.swing.DTextArea

removeListWatcher(ListWatcher) - Method in class org.catacomb.interlish.content.KeyedList

removeLogNotificand(LogNotificand) - Method in class org.catacomb.druid.guimodel.Log

removeLogNotificand(LogNotificand) - Method in interface org.catacomb.interlish.structure.InfoLog

removeNeighbor(SegmentGraphPoint) - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

removeNeighbor(CellPoint) - Method in class org.catacomb.numeric.difnet.CellPoint

removeNeighbor(MorphPoint) - Method in class org.textensor.stochdiff.model.MorphPoint

removeNeighbor(TreePoint) - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

removeObserver(Observer) - Method in interface org.catacomb.interlish.structure.Observable

removePanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruPanel

removePoint(SegmentGraphPoint) - Method in class org.catacomb.graph.arbor.SegmentGraph

removeSelectionPaths(TreePath[]) - Method in class org.catacomb.druid.swing.CheckTreeSelectionModel

removeStructureWatcher(StructureWatcher) - Method in class org.catacomb.interlish.content.QuantifiedListValue

removeTreeModelListener(TreeModelListener) - Method in class org.catacomb.druid.swing.DTreeModel

removeUnlistedDecoration(HashSet<String>) - Method in class org.textensor.vis.SceneGraphViewer

removeUpdate(DocumentEvent) - Method in class org.catacomb.druid.swing.DTextArea

removeUpdate(DocumentEvent) - Method in class org.catacomb.druid.swing.DTextField

removeUseWatcher(UseWatcher) - Method in class org.catacomb.interlish.content.PrimitiveValue

removeValueWatcher(ValueWatcher) - Method in class org.catacomb.interlish.content.PrimitiveValue

renderer - Variable in class org.catacomb.druid.blocks.List

renderer - Variable in class org.catacomb.druid.blocks.ScrollingCheckboxList

renderer - Variable in class org.catacomb.druid.blocks.ScrollingList

renderer - Variable in class org.catacomb.druid.swing.DTree

repaint() - Method in class org.catacomb.dataview.gui.BasicPlotController

repaint() - Method in class org.catacomb.dataview.gui.DViewPlotController

repaint() - Method in class org.catacomb.dataview.gui.Mesh2plusTimeController

repaint() - Method in class org.catacomb.druid.gui.base.DruPanel

repaint() - Method in class org.catacomb.druid.swing.dnd.RegionBoard

repaint() - Method in class org.catacomb.druid.xtext.canvas.TextBoard

repaint() - Method in class org.catacomb.druid.xtext.edit.TrashBoard

repaint() - Method in class org.catacomb.druid.xtext.edit.XRelationTree

repaint() - Method in class org.catacomb.druid.xtext.edit.XTypeTree

Repaintable - Interface in org.catacomb.interlish.structure

repaintAll() - Method in class org.catacomb.druid.gui.base.DruDataDisplay

repaintAll() - Method in class org.catacomb.graph.gui.DataDisplay

repaintMenu() - Method in class org.catacomb.druid.swing.DPopLabel

repaintPageData() - Method in interface org.catacomb.druid.xtext.base.DocDisplay

repaintStatus - Variable in class org.catacomb.graph.gui.MouseHandler

rePause() - Method in class org.catacomb.dataview.FrameController

rePause() - Method in class org.catacomb.dataview.gui.FramePlayerController

rePause() - Method in class org.catacomb.graph.gui.MovieDisplay

repeat - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

repivot(String) - Method in class org.catacomb.druid.build.TreeController

repivot(String) - Method in class org.catacomb.druid.util.tree.RelationTree

repivot(String) - Method in interface org.catacomb.interlish.structure.PivotedTree

REPLACE - Static variable in class org.catacomb.druid.gui.base.DruInfoPanel

replaceNeighbor(CellPoint, CellPoint) - Method in class org.catacomb.numeric.difnet.CellPoint

replaceNeighbor(MeshPoint, MeshPoint) - Method in class org.catacomb.numeric.mesh.DifMeshPoint

replaceNeighbor(MeshPoint, MeshPoint) - Method in interface org.catacomb.numeric.mesh.MeshPoint

replaceNeighbor(TreePoint, TreePoint) - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

replaceNeighborLabels(MorphPoint, MorphPoint) - Method in class org.textensor.stochdiff.model.MorphPoint

report - Variable in class org.catacomb.druid.blocks.LabelledTextField

report - Variable in class org.catacomb.druid.blocks.TextField

report(String) - Method in class org.catacomb.druid.guimodel.Log

report() - Method in class org.catacomb.druid.swing.DTabbedPane

report(int, String) - Static method in class org.catacomb.report.E

report(String) - Method in interface org.catacomb.report.Reporter

reportableID - Variable in class org.catacomb.interlish.content.PrimitiveValue

reportableSetBoolean(boolean, Object) - Method in class org.catacomb.interlish.content.BooleanValue

reportableSetColor(int, Object) - Method in class org.catacomb.interlish.content.ColorValue

reportableSetColor(String, Object) - Method in class org.catacomb.interlish.content.ColorValue

reportableSetDouble(double, Object) - Method in class org.catacomb.interlish.content.DoubleValue

reportableSetInteger(int, Object) - Method in class org.catacomb.interlish.content.IntegerValue

reportableSetObject(Object, Object) - Method in class org.catacomb.interlish.content.ExternValue

reportableSetQuantity(String, double, Object) - Method in class org.catacomb.interlish.content.QuantifiedListValue

reportableSetString(String, Object) - Method in class org.catacomb.interlish.content.StringValue

reportAction() - Method in class org.catacomb.druid.swing.DDropCanvas

reportAction() - Method in class org.catacomb.druid.swing.DTextField

reportCached() - Static method in class org.catacomb.report.E

reportCached() - Static method in class org.textensor.report.E

reportChange() - Method in class org.catacomb.druid.xtext.data.PageDataStore

reportChange() - Method in class org.catacomb.interlish.content.KeyedList

reportCompletion() - Method in class org.catacomb.numeric.data.NumDataStore

reportComponents() - Method in class org.catacomb.druid.gui.base.PanelPack

reportDataStructureChange() - Method in class org.catacomb.numeric.data.NumDataStore

reportDataValueChange() - Method in class org.catacomb.numeric.data.NumDataStore

reporter - Static variable in class org.catacomb.report.E

Reporter - Interface in org.catacomb.report

reportError(String) - Method in class org.catacomb.druid.guimodel.Log

reportError(String) - Method in interface org.catacomb.report.Reporter

reportFocus - Variable in class org.catacomb.druid.swing.DTextField

reportInfo(String) - Method in class org.catacomb.druid.guimodel.Log

reportInfo(String) - Method in interface org.catacomb.report.Reporter

reportingUse - Variable in class org.catacomb.interlish.content.PrimitiveValue

reportInValid() - Method in class org.catacomb.be.Position

reportNewChild() - Method in class org.catacomb.numeric.data.NumDataStore

reportNewFields() - Method in class org.catacomb.numeric.data.BlockStack

reportProgress() - Method in interface org.catacomb.interlish.structure.RunProcess

reportStructureChange(String) - Method in class org.catacomb.interlish.content.QuantifiedListValue

reportUse(Object) - Method in class org.catacomb.interlish.content.PrimitiveValue

reportValueChange(Object) - Method in class org.catacomb.interlish.content.PrimitiveValue

reportValueChange() - Method in class org.catacomb.numeric.data.BlockStack

reportWarning(String) - Method in class org.catacomb.druid.guimodel.Log

reportWarning(String) - Method in interface org.catacomb.report.Reporter

requestClose() - Method in class org.catacomb.dataview.DataviewController

requestClose() - Method in class org.catacomb.dataview.gui.CCVizController

requestClose() - Method in class org.catacomb.dataview.gui.DViewController

requestClose() - Method in interface org.catacomb.druid.event.ClosureListener

requestClose() - Method in class org.catacomb.druid.gui.base.DruFrame

requestClose() - Method in class org.catacomb.druid.util.ctrl.WindowCloser

requestExit() - Method in class org.catacomb.dataview.DataviewController

requestExit() - Method in class org.catacomb.dataview.gui.CCVizController

requestExit() - Method in class org.catacomb.dataview.gui.DViewController

requestExit() - Method in class org.catacomb.druid.load.DruidAppBase

requestFocus() - Method in class org.catacomb.druid.swing.dnd.RegionBoard

requestRepaint() - Method in class org.catacomb.druid.swing.DDropCanvas

requestRepaint() - Method in class org.catacomb.druid.swing.DTextCanvas

requestRepaint() - Method in class org.catacomb.graph.gui.BaseCanvas

requestRepaint() - Method in class org.catacomb.graph.gui.Mouse

requestRepaint() - Method in interface org.catacomb.interlish.structure.Repaintable

required - Variable in class org.catacomb.druid.blocks.Choice

REQUIRED_USER_SOURCE - Static variable in class org.catacomb.act.MethodSignature

Requisite - Class in org.catacomb.druid.blocks

Requisite() - Constructor for class org.catacomb.druid.blocks.Requisite

requisites - Variable in class org.catacomb.druid.blocks.Application

rerange(double[]) - Static method in class org.catacomb.graph.gui.Iconizer

ReReferencable - Interface in org.catacomb.be

reReference() - Method in interface org.catacomb.be.ReReferencable

reReference() - Method in class org.catacomb.datalish.SColor

reReference() - Method in class org.catacomb.graph.arbor.SegmentGraph

reReference(ArrayList<SegmentGraphPoint>) - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

reReference() - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

reReference() - Method in class org.catacomb.graph.drawing.GenericShape

reReference() - Method in class org.catacomb.graph.drawing.SegmentLine

reReference() - Method in class org.catacomb.graph.drawing.Shape

rescale - Variable in class org.catacomb.dataview.model.Plottable

rescale(double) - Method in class org.catacomb.graph.drawing.Shape

rescale(Color3f, double) - Method in class org.textensor.vis.SceneGraphBuilder

reset() - Method in interface org.catacomb.be.Instantiator

reset() - Method in class org.catacomb.druid.build.GUIStore

reset() - Method in class org.catacomb.graph.gui.MovieDisplay

reset() - Method in class org.catacomb.interlish.reflect.ClassInstantiator

reset() - Method in interface org.catacomb.interlish.structure.MovieOperator

reset() - Method in interface org.catacomb.interlish.structure.RunProcess

resetRange() - Method in class org.catacomb.dataview.gui.Mesh2plusTimeController

resetStore() - Method in class org.catacomb.druid.build.Context

resetStroke() - Method in class org.catacomb.graph.gui.Painter

resizeUpToText() - Method in class org.catacomb.druid.swing.DTextArea

resolution - Variable in class org.textensor.stochdiff.disc.DiscBoxer

resolution - Variable in class org.textensor.stochdiff.disc.DiscSplitter

resolution - Variable in class org.textensor.stochdiff.disc.LineBoxer

Resolution - Class in org.textensor.stochdiff.disc

Resolution(double, HashMap<String, Double>) - Constructor for class org.textensor.stochdiff.disc.Resolution

resolution - Variable in class org.textensor.stochdiff.disc.SegmentSlicer

resolution - Variable in class org.textensor.vis.Icing3DViewer

Resolvable - Interface in org.catacomb.interlish.structure

resolve(HashMap<Related, RelationNode>, HashSet<String>) - Method in class org.catacomb.druid.util.tree.RelationNode

resolve(ArrayList<IDd>) - Method in interface org.catacomb.interlish.structure.IDdResolvable

resolve() - Method in interface org.catacomb.interlish.structure.Resolvable

resolve(HashMap<String, NumDataSet>) - Method in class org.catacomb.numeric.data.DataSlice

resolve(NumDataSet) - Method in class org.catacomb.numeric.data.DataSlice

resolve(int[]) - Method in class org.catacomb.numeric.difnet.model.BasicNetRecorder

resolve(int[]) - Method in class org.catacomb.numeric.difnet.model.BasicNetStim

resolve(HashMap<String, Segment>, MorphPoint) - Method in class org.textensor.stochdiff.model.EndPoint

resolve() - Method in class org.textensor.stochdiff.model.Morphology

resolve(HashMap<String, Specie>) - Method in class org.textensor.stochdiff.model.Reaction

resolve() - Method in class org.textensor.stochdiff.model.ReactionScheme

resolve() - Method in class org.textensor.stochdiff.model.SDRun

resolve(HashMap<String, Segment>) - Method in class org.textensor.stochdiff.model.Segment

resolve(HashMap<String, SpineType>) - Method in class org.textensor.stochdiff.model.SpineAllocation

resolveAll(ArrayList<RelationNode>) - Method in class org.catacomb.druid.util.tree.RelationTree

resolveCalcTypes() - Method in class org.textensor.stochdiff.model.SDRun

resolved - Variable in class org.textensor.stochdiff.model.Morphology

resolved - Variable in class org.textensor.stochdiff.model.Segment

resource - Variable in class org.catacomb.interlish.resource.Role

ResourceAccess - Class in org.catacomb.interlish.service

ResourceAccess() - Constructor for class org.catacomb.interlish.service.ResourceAccess

resourceImporter - Static variable in class org.catacomb.dataview.read.Importer

ResourceImporter - Class in org.catacomb.dataview.read

ResourceImporter() - Constructor for class org.catacomb.dataview.read.ResourceImporter

resourceLoader - Static variable in class org.catacomb.interlish.service.ResourceAccess

ResourceLoader - Interface in org.catacomb.interlish.service

ResourceNotificand - Interface in org.catacomb.interlish.structure

resourceNotify(Object) - Method in interface org.catacomb.interlish.structure.Notificand

ResourceRole - Class in org.catacomb.interlish.resource

ResourceRole(String, String, String) - Constructor for class org.catacomb.interlish.resource.ResourceRole

ResourceRole() - Constructor for class org.catacomb.interlish.resource.ResourceRole

RestartTest - Class in org.textensor.stochdiff.examples.restart

RestartTest() - Constructor for class org.textensor.stochdiff.examples.restart.RestartTest

restoreAA() - Method in class org.catacomb.graph.gui.Mouse

restoreAA() - Method in class org.catacomb.graph.gui.WorldCanvas

resultType - Variable in class org.catacomb.numeric.data.DataSlice

resultWriter - Variable in class org.textensor.stochdiff.numeric.BaseCalc

ResultWriter - Class in org.textensor.stochdiff

ResultWriter(File) - Constructor for class org.textensor.stochdiff.ResultWriter

resultWriter - Variable in class org.textensor.stochdiff.SDCalc

resume() - Method in class org.catacomb.graph.gui.MovieDisplay

resume() - Method in interface org.catacomb.interlish.structure.MovieOperator

resume() - Method in interface org.catacomb.interlish.structure.RunProcess

returnEvents - Variable in class org.catacomb.druid.swing.DTextField

returnType - Variable in class org.catacomb.act.MethodSignature

returnType - Variable in class org.catacomb.act.MethodStub

returnValue - Variable in class org.catacomb.druid.dialog.ConfirmationDialogController

returnValue - Variable in class org.catacomb.druid.dialog.FolderDialogController

returnValue - Variable in class org.catacomb.druid.dialog.NamingDialogController

retval - Variable in class org.catacomb.druid.dialog.QuestionDialogController

revalidate() - Method in class org.catacomb.druid.gui.base.DruPanel

REVERSE_ORDER - Static variable in class org.catacomb.druid.gui.edit.DruListPanel

reverseEnds() - Method in class org.catacomb.numeric.difnet.calc.NetMapLink

reverseRate - Variable in class org.textensor.stochdiff.model.Reaction

reverseScript - Static variable in class org.catacomb.util.Diff

Standard ScriptBuilders.

reverseStringArray(String[]) - Static method in class org.catacomb.util.ArrayUtil

rewind() - Method in class org.catacomb.dataview.FrameController

rewind() - Method in class org.catacomb.dataview.gui.FramePlayerController

rewind() - Method in class org.catacomb.druid.chunk.MoviePlayController

rhs - Variable in class org.catacomb.numeric.difnet.calc.NetMapNode

RIGHT - Static variable in class org.catacomb.druid.gui.base.DruFlowPanel

RIGHT - Static variable in class org.catacomb.graph.gui.Mouse

RIGHT - Static variable in class org.catacomb.util.MouseUtil

RIGHT - Static variable in class org.textensor.vis.SceneGraphViewer

rightButton() - Method in class org.catacomb.graph.gui.Mouse

RightFlowPanel - Class in org.catacomb.druid.blocks

RightFlowPanel() - Constructor for class org.catacomb.druid.blocks.RightFlowPanel

rightMargin - Variable in class org.catacomb.dataview.GraphMaker

rightMargin - Variable in class org.catacomb.graph.gui.WorldTransform

rngen - Variable in class org.textensor.stochdiff.disc.SpineLocator

rnGo(double) - Method in class org.textensor.stochdiff.numeric.stochastic.NGoTable

Role - Class in org.catacomb.interlish.resource

Role() - Constructor for class org.catacomb.interlish.resource.Role

Role(String, String, String) - Constructor for class org.catacomb.interlish.resource.Role

roleMap - Variable in class org.catacomb.druid.load.DruidContentLoader

RoleMap - Class in org.catacomb.druid.load

RoleMap() - Constructor for class org.catacomb.druid.load.RoleMap

roles - Variable in class org.catacomb.druid.manifest.DecManifest

ROLL - Static variable in class org.catacomb.graph.gui.WorldCanvas

ROLL - Static variable in class org.textensor.vis.SceneGraphViewer

RollHandler - Class in org.catacomb.graph.gui

RollHandler() - Constructor for class org.catacomb.graph.gui.RollHandler

rollHandler - Variable in class org.catacomb.graph.gui.WorldCanvas

rollover - Variable in class org.catacomb.druid.swing.DButton

rollover - Variable in class org.catacomb.druid.swing.DCheckbox

rollover - Variable in class org.catacomb.druid.swing.DChoice

rollover - Variable in class org.catacomb.druid.swing.DFloatSlider

rollover - Variable in class org.catacomb.druid.swing.DImageButton

rollover - Variable in class org.catacomb.druid.swing.DSlider

rollover - Variable in class org.catacomb.druid.swing.DValueHistory

RolloverEffect - Class in org.catacomb.druid.swing

RolloverEffect(JComponent) - Constructor for class org.catacomb.druid.swing.RolloverEffect

RolloverEffect(JComponent, int, int) - Constructor for class org.catacomb.druid.swing.RolloverEffect

RolloverEffect - Class in org.catacomb.graph.gui

RolloverEffect(JComponent) - Constructor for class org.catacomb.graph.gui.RolloverEffect

RolloverEffect(JComponent, int, int) - Constructor for class org.catacomb.graph.gui.RolloverEffect

rolloverOffStyle - Variable in class org.catacomb.druid.swing.DButton

rolloverOnStyle - Variable in class org.catacomb.druid.swing.DButton

Root - Class in org.catacomb

Root() - Constructor for class org.catacomb.Root

rootBlock - Variable in class org.catacomb.druid.xtext.base.XTDoc

rootBlock - Variable in class org.catacomb.druid.xtext.canvas.TextBoard

rootClass - Variable in class org.catacomb.druid.load.DruidContentLoader

rootClass - Static variable in class org.catacomb.interlish.util.JUtil

rootComponent - Variable in class org.catacomb.druid.build.Druid

rootContext - Variable in class org.catacomb.dataview.read.JarImportContext

RootController - Interface in org.catacomb.interlish.structure

rootDir - Variable in class org.catacomb.interlish.interact.CodgerTask

rootDir - Variable in class org.catacomb.util.FileAccumulator

rootNode - Variable in class org.catacomb.druid.util.tree.RelationTree

rootPath - Variable in class org.catacomb.druid.manifest.DecManifest

rootPath - Static variable in class org.catacomb.interlish.util.JUtil

rootPolicy - Variable in class org.catacomb.druid.util.tree.RelationTree

rootRef - Variable in class org.catacomb.util.FileAccumulator

rootTransform - Variable in class org.textensor.vis.SceneGraphViewer

rootTransformGroup - Variable in class org.textensor.vis.SceneGraphViewer

rotate(Position) - Method in class org.catacomb.graph.drawing.Shape

rotate(ShapePoint, Position) - Method in class org.catacomb.graph.drawing.Shape

rotate(Direction) - Method in class org.catacomb.interlish.content.Polypoint

rotate(Rotation) - Method in class org.textensor.stochdiff.numeric.morph.TrianglesSet

rotate(Rotation) - Method in class org.textensor.stochdiff.numeric.morph.TriangleStrip

ROTATE_SHAPE - Static variable in class org.catacomb.graph.drawing.Shape

rotateAbout(Position, double) - Method in class org.catacomb.be.Position

rotateAbout(Position[], Position, double) - Static method in class org.catacomb.geom.Geom

rotateAbout(Movable, Position) - Method in class org.textensor.stochdiff.geom.GRotation

rotateAbout(Movable, Position) - Method in interface org.textensor.stochdiff.geom.Rotation

rotateBy(double) - Method in class org.catacomb.be.Position

rotateCosSin(double, double) - Method in class org.catacomb.be.Position

rotateFromTo(Position, Position) - Method in class org.catacomb.graph.drawing.Shape

rotateTo(Direction) - Method in class org.catacomb.be.Position

Rotation - Interface in org.textensor.stochdiff.geom

rotationChanged() - Method in interface org.catacomb.graph.gui.RotationListener

RotationListener - Interface in org.catacomb.graph.gui

rotationListener - Variable in class org.catacomb.graph.gui.WorldTransform

round(double) - Method in class org.catacomb.numeric.math.Matrix

round() - Method in class org.catacomb.numeric.math.Matrix

round(double) - Method in class org.textensor.stochdiff.numeric.math.Matrix

round() - Method in class org.textensor.stochdiff.numeric.math.Matrix

Row - Interface in org.catacomb.interlish.structure

ROW - Static variable in class org.textensor.stochdiff.numeric.math.Matrix

RowPeer - Interface in org.catacomb.interlish.structure

rows - Variable in class org.catacomb.druid.blocks.TextArea

rows - Variable in class org.catacomb.numeric.data.DataTable

rows - Variable in class org.catacomb.numeric.data.VectorSet

rsfMouseDown(int, int, long, int) - Method in class org.catacomb.druid.swing.DFloatSlider

rsfMouseDown(int, int, long, int) - Method in class org.catacomb.druid.swing.DSlider

rsfMouseDrag(int, int) - Method in class org.catacomb.druid.swing.DFloatSlider

rsfMouseDrag(int, int) - Method in class org.catacomb.druid.swing.DSlider

rsfMouseUp(int, int) - Method in class org.catacomb.druid.swing.DFloatSlider

rsfMouseUp(int, int) - Method in class org.catacomb.druid.swing.DSlider

RShape - Class in org.catacomb.interlish.content

RShape(double[], double[], double, SColor, SColor, int) - Constructor for class org.catacomb.interlish.content.RShape

rtab - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

rtab - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

rtab - Variable in class org.textensor.stochdiff.numeric.pool.DeterministicPoolCalc

rtab - Variable in class org.textensor.stochdiff.numeric.StaticCalc

rtab - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

rtPanel - Variable in class org.catacomb.druid.gui.edit.DruExpandingTextArea

rtPanel - Variable in class org.catacomb.druid.swing.DListProgressRenderer

run() - Method in class org.catacomb.dataview.gui.FramePlayer

run() - Method in class org.catacomb.druid.gui.edit.DruLogPanel

run() - Method in class org.catacomb.graph.gui.HoverTimer

run() - Method in class org.catacomb.graph.gui.MovieDisplay.MDThreadRunner

run() - Method in class org.catacomb.graph.gui.MovieFramePlayer

run() - Method in class org.catacomb.icon.splash.Splash

RUN - Static variable in class org.textensor.stochdiff.numeric.BaseCalc

run() - Method in class org.textensor.stochdiff.numeric.BaseCalc

run() - Method in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

run() - Method in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

run() - Method in class org.textensor.stochdiff.numeric.pool.DeterministicPoolCalc

run() - Method in class org.textensor.stochdiff.numeric.StaticCalc

run() - Method in class org.textensor.stochdiff.numeric.tmp.Tmp1A

run() - Method in class org.textensor.stochdiff.SDCalc

run() - Method in class org.textensor.vis.RunBuilder

run() - Method in class org.textensor.vis.RunDecorator

runAction - Variable in class org.textensor.stochdiff.numeric.BaseCalc

RunBuilder - Class in org.textensor.vis

RunBuilder(Icing3DViewer, Object) - Constructor for class org.textensor.vis.RunBuilder

RunDataBlock - Interface in org.catacomb.datalish

RunDataStore - Interface in org.catacomb.datalish

RunDecorator - Class in org.textensor.vis

RunDecorator(Icing3DViewer, Object) - Constructor for class org.textensor.vis.RunDecorator

RunException - Exception in org.catacomb.interlish.report

RunException(String) - Constructor for exception org.catacomb.interlish.report.RunException

RungeKutta4PoolCalc - Class in org.textensor.stochdiff.numeric.pool

RungeKutta4PoolCalc(SDRun) - Constructor for class org.textensor.stochdiff.numeric.pool.RungeKutta4PoolCalc

RUNNING - Static variable in interface org.catacomb.interlish.structure.StateProcess

runningIcon - Variable in class org.catacomb.druid.swing.DListProgressRenderer

RunProcess - Interface in org.catacomb.interlish.structure

runtests() - Static method in class org.textensor.stochdiff.StepgenTests

runtime - Variable in class org.catacomb.be.TimePoint

runtime - Variable in class org.textensor.stochdiff.model.SDRun

rvprod(double[]) - Method in class org.catacomb.numeric.math.Matrix

rvprod(double[]) - Method in class org.textensor.stochdiff.numeric.math.Matrix

rvprodOneElt(double[], int) - Method in class org.catacomb.numeric.math.Matrix

rvprodOneElt(double[], int) - Method in class org.textensor.stochdiff.numeric.math.Matrix

rx - Variable in class org.catacomb.graph.drawing.Oval

rx - Variable in class org.catacomb.graph.drawing.Rectangle

ry - Variable in class org.catacomb.graph.drawing.Oval

ry - Variable in class org.catacomb.graph.drawing.Rectangle

S

s - Variable in class org.catacomb.druid.swing.split.SplitterBarMouseListener

s - Variable in class org.catacomb.druid.swing.split.SplitterBarMouseMotionListener

same(Object, Object) - Static method in class org.catacomb.interlish.lang.U

sameAs(InfoMessage) - Method in class org.catacomb.druid.guimodel.LogEntry

sameAs(InfoMessage) - Method in interface org.catacomb.interlish.structure.InfoMessage

sameAsLast(String, Object) - Method in class org.catacomb.druid.market.SupplyClerk

samePeer(RelationNode) - Method in class org.catacomb.druid.util.tree.RelationNode

sameSubject(Message) - Method in class org.catacomb.interlish.report.Message

sample - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

samplefac - Variable in class org.catacomb.movie.gif.NeuQuant

save() - Method in class org.catacomb.druid.gui.edit.DruLogPanel

save() - Method in interface org.catacomb.interlish.structure.Saver

saveFile(File) - Method in interface org.catacomb.interlish.structure.SaverLoader

saveImage(File, int) - Method in class org.catacomb.dataview.DataviewController

saveJar(File) - Method in class org.catacomb.util.FileAccumulator

savePNG(File) - Method in class org.catacomb.graph.drawing.IconImage

Saver - Interface in org.catacomb.interlish.structure

SaverLoader - Interface in org.catacomb.interlish.structure

saveSnapshot(Object) - Method in class org.catacomb.druid.util.Snapshot

saveThumbnailImage(File, int) - Method in class org.catacomb.dataview.DataviewController

saveToFile(File) - Method in class org.catacomb.druid.build.ReceivingController

saveToFile(File) - Method in class org.catacomb.graph.drawing.IconEditorController

sbod - Variable in class org.textensor.stochdiff.model.SurfaceLayers

SCALAR - Static variable in class org.catacomb.numeric.data.DataSlice

ScalarFunction - Interface in org.catacomb.numeric.function

scalarValue - Variable in class org.catacomb.numeric.data.DataSlice

scale - Variable in class org.catacomb.druid.swing.DFloat

scale - Variable in class org.catacomb.druid.swing.DInt

scale - Variable in class org.catacomb.graph.drawing.IconWrapper

scale - Variable in class org.textensor.vis.SceneGraphViewer

scaleBy(double) - Method in class org.catacomb.graph.drawing.SegmentLine

scaleBy(double) - Method in class org.catacomb.graph.drawing.StraightLine

scaleColumn(double[], double) - Method in class org.catacomb.dataview.model.Plottable

scaleFactor - Variable in class org.textensor.vis.Icing3DViewer

scaleRangeTo(double, double[]) - Static method in class org.catacomb.util.MathUtil

scaleTo(double) - Method in class org.catacomb.graph.gui.PickableRegion

scaleTo(double, double) - Method in class org.catacomb.graph.gui.PickableRegion

scene - Variable in class org.catacomb.numeric.data.SceneBlock

SceneBlock - Class in org.catacomb.numeric.data

SceneBlock(int) - Constructor for class org.catacomb.numeric.data.SceneBlock

SceneConfig - Class in org.catacomb.datalish

SceneConfig(int) - Constructor for class org.catacomb.datalish.SceneConfig

SceneConfig(double, SpritePlacement[], SpriteEvents) - Constructor for class org.catacomb.datalish.SceneConfig

SceneGraphBuilder - Class in org.textensor.vis

SceneGraphBuilder() - Constructor for class org.textensor.vis.SceneGraphBuilder

sceneGraphViewer - Variable in class org.textensor.vis.Icing3DViewer

SceneGraphViewer - Class in org.textensor.vis

SceneGraphViewer() - Constructor for class org.textensor.vis.SceneGraphViewer

SceneItem - Class in org.textensor.vis

SceneItem(String, BranchGroup) - Constructor for class org.textensor.vis.SceneItem

sceneItemHM - Variable in class org.textensor.vis.SceneGraphViewer

SColor - Class in org.catacomb.datalish

SColor() - Constructor for class org.catacomb.datalish.SColor

SColor(String) - Constructor for class org.catacomb.datalish.SColor

SColor(Color) - Constructor for class org.catacomb.datalish.SColor

scolor - Variable in class org.catacomb.interlish.content.ConnectionFlavor

scope - Variable in class org.catacomb.druid.blocks.LogPanel

scope - Variable in class org.catacomb.druid.blocks.ScrollingInfoPanel

Scope - Class in org.catacomb.druid.build

Scope() - Constructor for class org.catacomb.druid.build.Scope

ScratchPanel - Class in org.catacomb.druid.blocks

ScratchPanel() - Constructor for class org.catacomb.druid.blocks.ScratchPanel

screenDistance2(double, double, double, int, int) - Method in class org.catacomb.graph.gui.Painter

ScriptChecker - Interface in org.catacomb.interlish.service

scriptChecker - Variable in class org.catacomb.interlish.service.ScriptManager

ScriptInfo - Interface in org.catacomb.interlish.service

scriptInfo - Variable in class org.catacomb.interlish.service.ScriptManager

ScriptManager - Class in org.catacomb.interlish.service

ScriptManager() - Constructor for class org.catacomb.interlish.service.ScriptManager

scriptMerger - Variable in class org.catacomb.interlish.service.ScriptManager

ScriptMerger - Interface in org.catacomb.interlish.service

ScriptReport - Interface in org.catacomb.interlish.service

ScriptSetter - Interface in org.catacomb.interlish.structure

ScriptSource - Interface in org.catacomb.interlish.service

ScriptStubs - Class in org.catacomb.act

ScriptStubs() - Constructor for class org.catacomb.act.ScriptStubs

ScriptUtil - Class in org.catacomb.util

ScriptUtil() - Constructor for class org.catacomb.util.ScriptUtil

SCROLLABLE - Static variable in class org.catacomb.druid.gui.base.DruPanel

SCROLLABLE - Static variable in class org.catacomb.druid.swing.DTextArea

ScrollableBorderPanel - Class in org.catacomb.druid.blocks

ScrollableBorderPanel() - Constructor for class org.catacomb.druid.blocks.ScrollableBorderPanel

ScrollableTextPanel - Class in org.catacomb.druid.blocks

ScrollableTextPanel() - Constructor for class org.catacomb.druid.blocks.ScrollableTextPanel

ScrollingCheckboxList - Class in org.catacomb.druid.blocks

ScrollingCheckboxList() - Constructor for class org.catacomb.druid.blocks.ScrollingCheckboxList

ScrollingHTMLPanel - Class in org.catacomb.druid.blocks

ScrollingHTMLPanel() - Constructor for class org.catacomb.druid.blocks.ScrollingHTMLPanel

ScrollingInfoPanel - Class in org.catacomb.druid.blocks

ScrollingInfoPanel() - Constructor for class org.catacomb.druid.blocks.ScrollingInfoPanel

ScrollingList - Class in org.catacomb.druid.blocks

ScrollingList() - Constructor for class org.catacomb.druid.blocks.ScrollingList

scrollPane - Variable in class org.catacomb.druid.gui.edit.DruCheckboxTreePanel

scrollPane - Variable in class org.catacomb.druid.gui.edit.DruTreePanel

ScrollPanel - Class in org.catacomb.druid.blocks

ScrollPanel() - Constructor for class org.catacomb.druid.blocks.ScrollPanel

scrollToBottom() - Method in class org.catacomb.druid.swing.DScrollPane

sd(double[]) - Static method in class org.catacomb.util.ArrayUtil

sd(double[][]) - Static method in class org.catacomb.util.ArrayUtil

SDCalc - Class in org.textensor.stochdiff

SDCalc(SDRun, File) - Constructor for class org.textensor.stochdiff.SDCalc

SDCalcType - Enum in org.textensor.stochdiff

SDCalcType(Class) - Constructor for enum org.textensor.stochdiff.SDCalcType

SDGaussianProblem - Class in org.textensor.stochdiff

SDGaussianProblem() - Constructor for class org.textensor.stochdiff.SDGaussianProblem

sdHM - Variable in class org.textensor.stochdiff.model.SurfaceDensitySet

sDouble(double) - Method in class org.catacomb.interlish.content.QuantifiedListValue

sdr - Variable in class org.textensor.stochdiff.reduce.Reducer

SDRun - Class in org.textensor.stochdiff.model

SDRun() - Constructor for class org.textensor.stochdiff.model.SDRun

sdRun - Variable in class org.textensor.stochdiff.numeric.BaseCalc

sdRun - Variable in class org.textensor.stochdiff.numeric.StaticCalc

sdRun - Variable in class org.textensor.stochdiff.SDCalc

sds - Variable in class org.textensor.stochdiff.model.SurfaceDensitySet

sds - Variable in class org.textensor.stochdiff.reduce.Reducer

sdSetHM - Variable in class org.textensor.stochdiff.model.InitialConditions

sdSets - Variable in class org.textensor.stochdiff.model.InitialConditions

SDState - Class in org.textensor.stochdiff.inter

SDState() - Constructor for class org.textensor.stochdiff.inter.SDState

sdstyle - Variable in class org.textensor.stochdiff.disc.SegmentSlicer

SDTest1Stoch - Class in org.textensor.stochdiff

SDTest1Stoch() - Constructor for class org.textensor.stochdiff.SDTest1Stoch

SDTest4 - Class in org.textensor.stochdiff

SDTest4() - Constructor for class org.textensor.stochdiff.SDTest4

SDTestDet - Class in org.textensor.stochdiff

SDTestDet() - Constructor for class org.textensor.stochdiff.SDTestDet

SDTestStoch - Class in org.textensor.stochdiff

SDTestStoch() - Constructor for class org.textensor.stochdiff.SDTestStoch

SDTestStochA - Class in org.textensor.stochdiff

SDTestStochA() - Constructor for class org.textensor.stochdiff.SDTestStochA

SDTestSuite1A - Class in org.textensor.stochdiff

SDTestSuite1A() - Constructor for class org.textensor.stochdiff.SDTestSuite1A

SDTestSuite2A - Class in org.textensor.stochdiff

SDTestSuite2A() - Constructor for class org.textensor.stochdiff.SDTestSuite2A

SDTestSuite3A - Class in org.textensor.stochdiff

SDTestSuite3A() - Constructor for class org.textensor.stochdiff.SDTestSuite3A

SDTestSuite3B - Class in org.textensor.stochdiff

SDTestSuite3B() - Constructor for class org.textensor.stochdiff.SDTestSuite3B

search - Variable in class org.catacomb.interlish.reflect.ReflectionConstructor

search - Variable in class org.textensor.xml.ReflectionInstantiator

Section - Class in org.textensor.stochdiff.model

Section() - Constructor for class org.textensor.stochdiff.model.Section

sections - Variable in class org.textensor.stochdiff.model.SpineType

seForegroundColor(Color) - Method in class org.catacomb.druid.gui.base.DruPanel

segidHM - Variable in class org.textensor.stochdiff.model.MorphPoint

segidHM - Variable in class org.textensor.stochdiff.numeric.morph.TreePoint

Segment - Class in org.textensor.stochdiff.model

Segment() - Constructor for class org.textensor.stochdiff.model.Segment

segment - Class in org.textensor.stochdiff.neuroml

segment() - Constructor for class org.textensor.stochdiff.neuroml.segment

SegmentDemo - Class in org.catacomb.graph.arbor

SegmentDemo() - Constructor for class org.catacomb.graph.arbor.SegmentDemo

SegmentGraph - Class in org.catacomb.graph.arbor

SegmentGraph() - Constructor for class org.catacomb.graph.arbor.SegmentGraph

SegmentGraphPainter - Class in org.catacomb.graph.arbor

SegmentGraphPainter() - Constructor for class org.catacomb.graph.arbor.SegmentGraphPainter

SegmentGraphPoint - Class in org.catacomb.graph.arbor

SegmentGraphPoint() - Constructor for class org.catacomb.graph.arbor.SegmentGraphPoint

SegmentGraphPoint(double, double) - Constructor for class org.catacomb.graph.arbor.SegmentGraphPoint

SegmentGraphPoint(double, double, int) - Constructor for class org.catacomb.graph.arbor.SegmentGraphPoint

SegmentGraphVE - Class in org.catacomb.graph.arbor

SegmentGraphVE() - Constructor for class org.catacomb.graph.arbor.SegmentGraphVE

segmentIDWith(TreePoint) - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

SegmentLine - Class in org.catacomb.graph.drawing

SegmentLine() - Constructor for class org.catacomb.graph.drawing.SegmentLine

SegmentLine(double[], double[], Color) - Constructor for class org.catacomb.graph.drawing.SegmentLine

SegmentMerger - Class in org.textensor.stochdiff.disc

SegmentMerger() - Constructor for class org.textensor.stochdiff.disc.SegmentMerger

segments - Variable in class org.textensor.stochdiff.model.Morphology

segments - Variable in class org.textensor.stochdiff.neuroml.cell

SegmentSlicer - Class in org.textensor.stochdiff.disc

divided into segments either with fixed lengths or with equal integral of the square root of the radiusr.

SegmentSlicer(TreePoint[]) - Constructor for class org.textensor.stochdiff.disc.SegmentSlicer

select() - Method in interface org.catacomb.druid.build.GroupContingent

select(String) - Method in class org.catacomb.druid.gui.base.DruButtonGroup

select() - Method in class org.catacomb.druid.gui.edit.DruToggleButton

select(Object) - Method in class org.catacomb.druid.swing.DTabbedPane

select() - Method in class org.catacomb.graph.drawing.Shape

selectable - Variable in class org.catacomb.graph.arbor.SegmentGraphVE

selectAction - Variable in class org.catacomb.graph.arbor.SegmentGraphVE

selectAll() - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

selectAll() - Method in class org.catacomb.druid.gui.edit.DruToggleListPanel

selectAll() - Method in class org.catacomb.druid.swing.DCheckboxList

selectAt(int) - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

selectAt(int) - Method in class org.catacomb.druid.gui.edit.DruListPanel

selectAt(int) - Method in class org.catacomb.druid.gui.edit.DruToggleListPanel

selectAt(int) - Method in class org.catacomb.druid.swing.DCheckboxList

selectAt(int) - Method in class org.catacomb.druid.swing.DList

selected - Variable in class org.catacomb.druid.swing.DChoice

selected - Variable in class org.catacomb.druid.swing.DRadioButtons

SELECTED - Static variable in class org.catacomb.druid.swing.TristateCheckBox

selectedColor - Static variable in class org.catacomb.druid.swing.LAF

selectedType - Variable in class org.catacomb.druid.xtext.edit.XRelationTree

selectedType - Variable in class org.catacomb.druid.xtext.edit.XTypeTree

selectionAction(Object, String) - Method in class org.catacomb.druid.build.TreeController

selectionAction(Object, String) - Method in class org.catacomb.druid.gui.edit.DruCheckboxTreePanel

selectionAction(Object, String) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

selectionAction(Object, String) - Method in class org.catacomb.druid.xtext.base.DocStore

selectionAction(Object, String) - Method in interface org.catacomb.interlish.structure.SelectionActor

selectionActor - Variable in class org.catacomb.druid.gui.edit.DruTreePanel

selectionActor - Variable in class org.catacomb.druid.swing.DCheckboxTree

selectionActor - Variable in class org.catacomb.druid.swing.DTree

SelectionActor - Interface in org.catacomb.interlish.structure

SelectionListener - Interface in org.catacomb.interlish.structure

selectionModel - Variable in class org.catacomb.druid.swing.CheckTreeRenderer

selectionModel - Variable in class org.catacomb.druid.swing.DCheckboxTree

selectionSource - Variable in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

selectionSource - Variable in class org.catacomb.druid.gui.edit.DruMenuItem

SelectionSource - Interface in org.catacomb.interlish.structure

selectionType - Variable in class org.catacomb.druid.gui.edit.DruCheckboxTreePanel

selectionType - Variable in class org.catacomb.druid.gui.edit.DruTreePanel

selectOne(String) - Method in class org.catacomb.druid.swing.DChoice

Selector - Interface in org.catacomb.interlish.structure

selfActivate() - Method in class org.catacomb.druid.build.Druid

SelfEditor - Interface in org.catacomb.report

SelfSummarizer - Interface in org.catacomb.interlish.structure

semiHTMLize(String) - Static method in class org.catacomb.util.StringUtil

SemiImplicitEulerPoolCalc - Class in org.textensor.stochdiff.numeric.pool

SemiImplicitEulerPoolCalc(SDRun) - Constructor for class org.textensor.stochdiff.numeric.pool.SemiImplicitEulerPoolCalc

SEND - Static variable in interface org.catacomb.act.BlockSignature

sendTo(ArrayList<Dependent>, Object) - Method in class org.catacomb.druid.market.SupplyClerk

sentMessages - Static variable in class org.catacomb.report.E

Separator - Class in org.catacomb.druid.blocks

Separator() - Constructor for class org.catacomb.druid.blocks.Separator

separator - Static variable in class org.catacomb.util.PathUtil

SerializationContext - Class in org.catacomb.serial

SerializationContext() - Constructor for class org.catacomb.serial.SerializationContext

serialize() - Method in interface org.catacomb.interlish.structure.Element

serialize() - Method in class org.catacomb.serial.om.OmElement

serialize(Object) - Static method in class org.catacomb.serial.Serializer

serialize(Object) - Static method in class org.catacomb.serial.xml.XMLWriter

serialize(Object) - Static method in class org.textensor.xml.XMLWriter

serializeColor(Color) - Static method in class org.catacomb.datalish.SColor

serializeColor(Color) - Static method in class org.catacomb.util.ColorUtil

serializeContent(Element) - Static method in class org.catacomb.serial.ElementSerializer

serializeDoubleArray(double[]) - Static method in class org.catacomb.serial.SerialUtil

Serializer - Class in org.catacomb.serial

Serializer() - Constructor for class org.catacomb.serial.Serializer

serializeSWC() - Method in class org.textensor.stochdiff.numeric.morph.TreeWriter

SerialUtil - Class in org.catacomb.serial

SerialUtil() - Constructor for class org.catacomb.serial.SerialUtil

serialVersionUID - Static variable in class org.catacomb.dataview.AppletDataViewer

serialVersionUID - Static variable in class org.catacomb.druid.blocks.ListClickArea

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruAssemblyPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruBorderPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruBoxPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruBrowserPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruButtonGroup

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruCardPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruCollapsiblePanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruDataDisplay

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruDialog

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruDotsPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruDrawingCanvas

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruFloatBoxPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruFlowPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruFormPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruFrame

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruGridPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruHRPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruImageLabelPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruInfoPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruKitPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruLabel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruLabelPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruLeftRightSplitPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruListColorRenderer

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruListProgressRenderer

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruListQuantityRenderer

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruMenuBar

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruMovieDisplay

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruMultiSplitPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruPlaceholderPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruPseudoCardPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruRightAlignedLabel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruScratchPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruScrollableBorderPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruScrollableTextPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruScrollingInfoPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruScrollPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruStatusBar

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruTabbedPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruTextPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruUpDownSplitPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.base.DruVerticalBoxPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruButton

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruCheckbox

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruCheckboxTreePanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruChoice

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruColorChoice

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruDropBox

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruExpandingTextArea

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruFillGuage

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruFloat

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruGCPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruHTMLPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruInt

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruLabelledTextField

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruListPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruLoggedButton

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruLogPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruMenu

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruMenuButton

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruMenuItem

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruProgressReport

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruRadioButtons

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruSimpleSlider

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruSlider

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruTextArea

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruTextField

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruToggleButton

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruToggleListPanel

serialVersionUID - Static variable in class org.catacomb.druid.gui.edit.DruTreePanel

serialVersionUID - Static variable in class org.catacomb.druid.swing.CheckListCellRenderer

serialVersionUID - Static variable in class org.catacomb.druid.swing.CheckTreeRenderer

serialVersionUID - Static variable in class org.catacomb.druid.swing.CheckTreeSelectionModel

serialVersionUID - Static variable in class org.catacomb.druid.swing.DBorderLayout

serialVersionUID - Static variable in class org.catacomb.druid.swing.DBoxPanel

serialVersionUID - Static variable in class org.catacomb.druid.swing.DButton

serialVersionUID - Static variable in class org.catacomb.druid.swing.DButtonGroup

serialVersionUID - Static variable in class org.catacomb.druid.swing.DCardPanel

serialVersionUID - Static variable in class org.catacomb.druid.swing.DCheckbox

serialVersionUID - Static variable in class org.catacomb.druid.swing.DCheckboxList

serialVersionUID - Static variable in class org.catacomb.druid.swing.DCheckboxMenuItem

serialVersionUID - Static variable in class org.catacomb.druid.swing.DCheckboxTree

serialVersionUID - Static variable in class org.catacomb.druid.swing.DChoice

serialVersionUID - Static variable in class org.catacomb.druid.swing.DColorChooser

serialVersionUID - Static variable in class org.catacomb.druid.swing.DComboBox

serialVersionUID - Static variable in class org.catacomb.druid.swing.DDialog

serialVersionUID - Static variable in class org.catacomb.druid.swing.DDotsPanel

serialVersionUID - Static variable in class org.catacomb.druid.swing.DDropCanvas

serialVersionUID - Static variable in class org.catacomb.druid.swing.DDropTextField

serialVersionUID - Static variable in class org.catacomb.druid.swing.DEditorPane

serialVersionUID - Static variable in class org.catacomb.druid.swing.DFileChooser

serialVersionUID - Static variable in class org.catacomb.druid.swing.DFillGuage

serialVersionUID - Static variable in class org.catacomb.druid.swing.DFloat

serialVersionUID - Static variable in class org.catacomb.druid.swing.DFloatSlider

serialVersionUID - Static variable in class org.catacomb.druid.swing.DFormPanel

serialVersionUID - Static variable in class org.catacomb.druid.swing.DFrame

serialVersionUID - Static variable in class org.catacomb.druid.swing.DHRPanel

serialVersionUID - Static variable in class org.catacomb.druid.swing.DHTMLPane

serialVersionUID - Static variable in class org.catacomb.druid.swing.DImageButton

serialVersionUID - Static variable in class org.catacomb.druid.swing.DInfoArea

serialVersionUID - Static variable in class org.catacomb.druid.swing.DInt

serialVersionUID - Static variable in class org.catacomb.druid.swing.DLabel

serialVersionUID - Static variable in class org.catacomb.druid.swing.DList

serialVersionUID - Static variable in class org.catacomb.druid.swing.DListColorRenderer

serialVersionUID - Static variable in class org.catacomb.druid.swing.DListProgressRenderer

serialVersionUID - Static variable in class org.catacomb.druid.swing.DListQuantityRenderer

serialVersionUID - Static variable in class org.catacomb.druid.swing.DMenu

serialVersionUID - Static variable in class org.catacomb.druid.swing.DMenuBar

serialVersionUID - Static variable in class org.catacomb.druid.swing.DMenuItem

serialVersionUID - Static variable in class org.catacomb.druid.swing.dnd.InternalTransferHandler

serialVersionUID - Static variable in class org.catacomb.druid.swing.DPanel

serialVersionUID - Static variable in class org.catacomb.druid.swing.DPlainTextEditor

serialVersionUID - Static variable in class org.catacomb.druid.swing.DPopLabel

serialVersionUID - Static variable in class org.catacomb.druid.swing.DProgressReport

serialVersionUID - Static variable in class org.catacomb.druid.swing.DRadioButton

serialVersionUID - Static variable in class org.catacomb.druid.swing.DRadioButtons

serialVersionUID - Static variable in class org.catacomb.druid.swing.DScrollablePanel

serialVersionUID - Static variable in class org.catacomb.druid.swing.DScrollPane

serialVersionUID - Static variable in class org.catacomb.druid.swing.DSlider

serialVersionUID - Static variable in class org.catacomb.druid.swing.DSplitPane

serialVersionUID - Static variable in class org.catacomb.druid.swing.DSplitPaneDivider

serialVersionUID - Static variable in class org.catacomb.druid.swing.DSubMenu

serialVersionUID - Static variable in class org.catacomb.druid.swing.DTabbedPane

serialVersionUID - Static variable in class org.catacomb.druid.swing.DTextArea

serialVersionUID - Static variable in class org.catacomb.druid.swing.DTextCanvas

serialVersionUID - Static variable in class org.catacomb.druid.swing.DTextField

serialVersionUID - Static variable in class org.catacomb.druid.swing.DToggleButton

serialVersionUID - Static variable in class org.catacomb.druid.swing.DToolablePanel

serialVersionUID - Static variable in class org.catacomb.druid.swing.DTree

serialVersionUID - Static variable in class org.catacomb.druid.swing.DTreePanel

serialVersionUID - Static variable in class org.catacomb.druid.swing.DValueHistory

serialVersionUID - Static variable in class org.catacomb.druid.swing.GradientPanel

serialVersionUID - Static variable in class org.catacomb.druid.swing.split.DSplitterBar

serialVersionUID - Static variable in class org.catacomb.druid.swing.split.DSplitterSpace

serialVersionUID - Static variable in class org.catacomb.druid.swing.split.SplitterExample

serialVersionUID - Static variable in class org.catacomb.druid.swing.split.SplitterLayout

serialVersionUID - Static variable in class org.catacomb.druid.swing.TCRenderer

serialVersionUID - Static variable in class org.catacomb.druid.swing.TristateCheckBox

serialVersionUID - Static variable in class org.catacomb.graph.gui.AboveBelowSplitPanel

serialVersionUID - Static variable in class org.catacomb.graph.gui.AxisGraphDivider

serialVersionUID - Static variable in class org.catacomb.graph.gui.BaseCanvas

serialVersionUID - Static variable in class org.catacomb.graph.gui.BasePanel

serialVersionUID - Static variable in class org.catacomb.graph.gui.CornerCanvas

serialVersionUID - Static variable in class org.catacomb.graph.gui.CornerPanel

serialVersionUID - Static variable in class org.catacomb.graph.gui.DataDisplay

serialVersionUID - Static variable in class org.catacomb.graph.gui.DrawingCanvas

serialVersionUID - Static variable in class org.catacomb.graph.gui.HorizontalAxisAxisDivider

serialVersionUID - Static variable in class org.catacomb.graph.gui.HorizontalAxisGraphDivider

serialVersionUID - Static variable in class org.catacomb.graph.gui.IconButton

serialVersionUID - Static variable in class org.catacomb.graph.gui.IconRadioButton

serialVersionUID - Static variable in class org.catacomb.graph.gui.LeftRightSplitPanel

serialVersionUID - Static variable in class org.catacomb.graph.gui.MovieDisplay

serialVersionUID - Static variable in class org.catacomb.graph.gui.PickWorldCanvas

serialVersionUID - Static variable in class org.catacomb.graph.gui.VerticalAxisGraphDivider

serialVersionUID - Static variable in class org.catacomb.graph.gui.WorldCanvas

serialVersionUID - Static variable in class org.catacomb.graph.gui.XAxisCanvas

serialVersionUID - Static variable in class org.catacomb.graph.gui.YAxisCanvas

serialVersionUID - Static variable in class org.catacomb.icon.DImageIcon

serialVersionUID - Static variable in class org.catacomb.icon.splash.SplashWindow

serialVersionUID - Static variable in exception org.catacomb.interlish.report.RunException

set(XYLocation) - Method in class org.catacomb.be.Position

set(double, double) - Method in class org.catacomb.be.Position

set(double, double) - Method in class org.catacomb.graph.gui.Size

set(double, double) - Method in class org.catacomb.interlish.content.Heading

set(IntPosition) - Method in class org.catacomb.interlish.content.IntPosition

set(int, int) - Method in class org.catacomb.interlish.content.IntPosition

set(String) - Method in class org.catacomb.interlish.content.StringValue

set(String, Object) - Method in class org.catacomb.interlish.reflect.ReflectionWrapper

set(String, Object) - Method in interface org.catacomb.interlish.structure.SettableStructure

set(String, String) - Method in class org.catacomb.serial.quickxml.Element

set(String, String, String) - Method in class org.catacomb.serial.quickxml.Element

set(int, int, double) - Method in class org.textensor.stochdiff.numeric.math.Matrix

set2Center(double[]) - Method in class org.catacomb.graph.gui.WorldTransform

set3Center(double[]) - Method in class org.catacomb.graph.gui.WorldTransform

setA(String, Object) - Method in class org.catacomb.druid.xtext.data.XRelation

setAA(boolean) - Method in class org.textensor.vis.Icing3DViewer

setAA(boolean) - Method in class org.textensor.vis.SceneGraphViewer

setAA(boolean) - Method in interface org.textensor.vis.Visualizer

setAble(boolean) - Method in class org.catacomb.interlish.content.PrimitiveValue

setAbscissa(String) - Method in class org.catacomb.graph.gui.DataView

setAction(String) - Method in class org.catacomb.druid.build.ContingencyGroup

setAction(String) - Method in class org.catacomb.druid.gui.edit.DruGCPanel

setAction(String) - Method in class org.catacomb.druid.gui.edit.DruMenu

setActionCommand(String) - Method in class org.catacomb.druid.gui.edit.DruButton

setActionCommand(String) - Method in class org.catacomb.druid.swing.DBaseButton

setActionCommand(String) - Method in class org.catacomb.druid.swing.DCheckbox

setActionCommand(String) - Method in class org.catacomb.druid.swing.DCheckboxMenuItem

setActionCommand(String) - Method in class org.catacomb.druid.swing.DImageButton

setActionCommand(String) - Method in class org.catacomb.druid.swing.DMenuItem

setActionCommand(String) - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

setActionMethod(String) - Method in class org.catacomb.druid.gui.edit.DruGCPanel

setActionRelay(ActionRelay) - Method in class org.catacomb.druid.gui.base.DruDialog

setActionRelay(ActionRelay) - Method in class org.catacomb.druid.gui.base.DruFrame

setActionRelay(ActionRelay) - Method in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

setActionRelay(ActionRelay) - Method in class org.catacomb.druid.gui.edit.DruGCPanel

setActionRelay(ActionRelay) - Method in class org.catacomb.druid.gui.edit.DruMenu

setActionRelay(ActionRelay) - Method in class org.catacomb.druid.gui.edit.DruMenuItem

setActionRelay(ActionRelay) - Method in interface org.catacomb.interlish.structure.ActionSource

setActiveArea(double) - Method in class org.catacomb.numeric.difnet.model.BasicStructureLink

setAllMultiIndexes() - Method in class org.catacomb.graph.gui.DataView

setAlongArea(double) - Method in class org.textensor.stochdiff.numeric.morph.CuboidVolumeElement

setAlongArea(double) - Method in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

setAmplitude(double) - Method in class org.catacomb.numeric.function.AR1Noise

setAntialias(boolean) - Method in class org.catacomb.druid.chunk.MouseModeController

setAntialias(boolean) - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

setAntialias(boolean) - Method in class org.catacomb.druid.swing.dnd.RegionBoard

setAntialias(boolean) - Method in class org.catacomb.druid.swing.DTextCanvas

setAntialias(boolean) - Method in class org.catacomb.graph.arbor.SegmentGraphPainter

setAntialias(boolean) - Method in class org.catacomb.graph.arbor.SegmentGraphVE

setAntialias(boolean) - Method in class org.catacomb.graph.gui.DrawingCanvas

setAntialias(boolean) - Method in class org.catacomb.graph.gui.WorldCanvas

setAntialiased() - Method in class org.catacomb.druid.gui.edit.DruExpandingTextArea

setAntialiased() - Method in class org.catacomb.druid.gui.edit.DruTextArea

setAntialiased() - Method in class org.catacomb.druid.swing.DTextArea

setAppendMode() - Method in class org.catacomb.druid.gui.base.DruInfoPanel

setApplicationName(String) - Method in class org.catacomb.interlish.service.AppPersist

setArea(double) - Method in class org.catacomb.numeric.difnet.model.BasicStructureNode

setArgList(String) - Method in class org.catacomb.act.MethodStub

setArmed(boolean) - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

Filter: No one may change the armed status except us.

setArrayField(Object, Field, ArrayList) - Method in class org.catacomb.interlish.reflect.ReflectionConstructor

setArrayField(Object, Field, ArrayList) - Method in class org.textensor.xml.ReflectionInstantiator

setAspectRatio(double) - Method in class org.catacomb.graph.gui.WorldTransform

setAspectRatioFree() - Method in class org.catacomb.graph.gui.WorldTransform

setAssembly(Object) - Method in class org.catacomb.druid.gui.base.DruAssemblyPanel

setAssembly(Object) - Method in interface org.catacomb.interlish.interact.Workbench

setAttribute(String, String) - Method in class org.catacomb.serial.om.OmElement

setAttributeField(Object, String, String) - Method in class org.catacomb.interlish.reflect.ReflectionConstructor

setAttributeField(Object, String, String) - Method in interface org.catacomb.interlish.structure.Constructor

setAttributeField(Object, String, String) - Method in class org.catacomb.serial.om.ElementConstructor

setAttributeField(Object, String, String) - Method in class org.catacomb.serial.xml.VectorConstructor

setAttributeField(Object, String, String) - Method in class org.textensor.xml.ReflectionInstantiator

setAttributes(ArrayList<Attribute>) - Method in class org.catacomb.serial.om.OmElement

setAttributes(String[]) - Method in class org.catacomb.serial.xml.XMLToken

setAttributes(String[]) - Method in class org.textensor.xml.XMLToken

setAutoResize(boolean) - Method in class org.catacomb.druid.gui.edit.DruExpandingTextArea

setAutoSelect(int) - Method in class org.catacomb.druid.gui.edit.DruChoice

setAutoSelect(int) - Method in class org.catacomb.druid.gui.edit.DruRadioButtons

setAutoSelect(int) - Method in class org.catacomb.druid.swing.DChoice

setAxialConductance(double) - Method in class org.catacomb.numeric.difnet.model.BasicNetStructure

setAxisColor(Color) - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

setAxisColor(Color) - Method in class org.catacomb.graph.gui.DrawingCanvas

setAxisColor(Color) - Method in class org.catacomb.graph.gui.GridPainter

setAxisColor(Color) - Method in class org.catacomb.graph.gui.PickWorldCanvas

setB(String, Object) - Method in class org.catacomb.druid.xtext.data.XRelation

setBackground(Color) - Method in class org.catacomb.druid.swing.DSplitPane

setBackground(Color) - Method in class org.catacomb.druid.swing.DSplitPaneUI

setBackground(Color) - Method in class org.catacomb.interlish.content.ColorSet

setBackgroundColor(Color) - Method in class org.catacomb.dataview.Plot

setBackgroundColor(Color) - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

setBackgroundColor(Color) - Method in class org.catacomb.druid.gui.base.DruFrame

setBackgroundColor(Color) - Method in class org.catacomb.druid.gui.base.DruPanel

setBackgroundColor(Color) - Method in class org.catacomb.druid.swing.DTextArea

setBackgroundColor(Color) - Method in class org.catacomb.graph.gui.DrawingCanvas

setBaseLabel(String) - Method in class org.catacomb.druid.swing.DCheckbox

setBaseLabel(String) - Method in class org.catacomb.druid.swing.DCheckboxMenuItem

setBaseLabel(String) - Method in class org.catacomb.druid.swing.DMenuItem

setBasicStroke(double) - Method in class org.catacomb.graph.gui.Painter

setBatch() - Static method in class org.catacomb.graph.gui.DataDisplay

setBearing(double) - Method in class org.catacomb.interlish.content.Heading

setBg(Color) - Method in class org.catacomb.druid.build.Context

setBg(Color) - Method in class org.catacomb.druid.gui.base.DruAssemblyPanel

setBg(Color) - Method in class org.catacomb.druid.gui.base.DruBrowserPanel

setBg(Color) - Method in class org.catacomb.druid.gui.base.DruDataDisplay

setBg(Color) - Method in class org.catacomb.druid.gui.base.DruDotsPanel

setBg(Color) - Method in class org.catacomb.druid.gui.base.DruFloatBoxPanel

setBg(Color) - Method in class org.catacomb.druid.gui.base.DruFormPanel

setBg(Color) - Method in class org.catacomb.druid.gui.base.DruInfoPanel

setBg(Color) - Method in class org.catacomb.druid.gui.base.DruLabel

setBg(Color) - Method in class org.catacomb.druid.gui.base.DruLeftRightSplitPanel

setBg(Color) - Method in class org.catacomb.druid.gui.base.DruMovieDisplay

setBg(Color) - Method in class org.catacomb.druid.gui.base.DruPanel

setBg(Color) - Method in class org.catacomb.druid.gui.base.DruScratchPanel

setBg(Color) - Method in class org.catacomb.druid.gui.base.DruScrollableTextPanel

setBg(Color) - Method in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

setBg(Color) - Method in class org.catacomb.druid.gui.base.DruScrollPanel

setBg(Color) - Method in class org.catacomb.druid.gui.base.DruStatusBar

setBg(Color) - Method in class org.catacomb.druid.gui.base.DruTabbedPanel

setBg(Color) - Method in class org.catacomb.druid.gui.base.DruTextPanel

setBg(Color) - Method in class org.catacomb.druid.gui.base.DruUpDownSplitPanel

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruButton

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruCheckbox

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruChoice

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruColorChoice

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruDropBox

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruExpandingTextArea

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruFillGuage

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruFloat

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruHTMLPanel

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruInt

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruLabelledTextField

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruListPanel

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruLogPanel

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruMenu

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruProgressReport

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruRadioButtons

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruSimpleSlider

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruSlider

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruTextArea

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruToggleButton

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruToggleListPanel

setBg(Color) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

setBg(Color) - Method in class org.catacomb.druid.swing.DBaseButton

setBg(Color) - Method in class org.catacomb.druid.swing.DButton

setBg(Color) - Method in class org.catacomb.druid.swing.DCheckbox

setBg(Color) - Method in class org.catacomb.druid.swing.DCheckboxList

setBg(Color) - Method in class org.catacomb.druid.swing.DCheckboxTree

setBg(Color) - Method in class org.catacomb.druid.swing.DChoice

setBg(Color) - Method in class org.catacomb.druid.swing.DDialog

setBg(Color) - Method in class org.catacomb.druid.swing.DDotsPanel

setBg(Color) - Method in class org.catacomb.druid.swing.DEditorPane

setBg(Color) - Method in class org.catacomb.druid.swing.DFillGuage

setBg(Color) - Method in class org.catacomb.druid.swing.DFloat

setBg(Color) - Method in class org.catacomb.druid.swing.DFloatSlider

setBg(Color) - Method in class org.catacomb.druid.swing.DFormPanel

setBg(Color) - Method in class org.catacomb.druid.swing.DFrame

setBg(Color) - Method in class org.catacomb.druid.swing.DHTMLPane

setBg(Color) - Method in class org.catacomb.druid.swing.DImageButton

setBg(Color) - Method in class org.catacomb.druid.swing.DInt

setBg(Color) - Method in class org.catacomb.druid.swing.DLabel

setBg(Color) - Method in class org.catacomb.druid.swing.DList

setBg(Color) - Method in class org.catacomb.druid.swing.DPanel

setBg(Color) - Method in class org.catacomb.druid.swing.DPopLabel

setBg(Color) - Method in class org.catacomb.druid.swing.DProgressReport

setBg(Color) - Method in class org.catacomb.druid.swing.DRadioButtons

setBg(Color) - Method in class org.catacomb.druid.swing.DScrollPane

setBg(Color) - Method in class org.catacomb.druid.swing.DSimpleSlider

setBg(Color) - Method in class org.catacomb.druid.swing.DSlider

setBg(Color) - Method in class org.catacomb.druid.swing.DTabbedPane

setBg(Color) - Method in class org.catacomb.druid.swing.DTextArea

setBg(Color) - Method in class org.catacomb.druid.swing.DToggleButton

setBg(Color) - Method in class org.catacomb.druid.swing.DTree

setBg(Color) - Method in class org.catacomb.druid.swing.DValueHistory

setBg(Color) - Method in class org.catacomb.druid.swing.RolloverEffect

setBg(Color) - Method in class org.catacomb.graph.gui.AboveBelowSplitPanel

setBg(Color) - Method in class org.catacomb.graph.gui.BaseCanvas

setBg(Color) - Method in class org.catacomb.graph.gui.BasePanel

setBg(Color) - Method in class org.catacomb.graph.gui.CornerPanel

setBg(Color) - Method in class org.catacomb.graph.gui.DataDisplay

setBg(Color) - Method in class org.catacomb.graph.gui.IconButton

setBg(Color) - Method in class org.catacomb.graph.gui.MovieDisplay

setBg(Color) - Method in class org.catacomb.graph.gui.PickWorldCanvas

setBg(Color) - Method in class org.catacomb.graph.gui.RolloverEffect

setBg(Color) - Method in class org.catacomb.interlish.content.ColorSet

setBg(Color) - Method in interface org.catacomb.interlish.interact.Workbench

setBlock(Block) - Method in class org.catacomb.druid.xtext.canvas.TextBoard

setBody(String) - Method in class org.catacomb.act.MethodSignature

setBody(String) - Method in interface org.catacomb.interlish.structure.BodyValued

setBody(String) - Method in class org.catacomb.serial.om.OmElement

setBodyValue(String) - Method in interface org.textensor.stochdiff.inter.BodyValued

setBodyValue(String) - Method in class org.textensor.stochdiff.model.MaxAspectRatio

setBodyValue(String) - Method in class org.textensor.stochdiff.model.MaxElementSide

setBodyValue(String) - Method in class org.textensor.stochdiff.model.SurfaceLayers

setBodyValue(String) - Method in class org.textensor.stochdiff.neuroml.MetaItem

setBoldFont() - Method in class org.catacomb.druid.gui.edit.DruButton

setBoldFont() - Method in class org.catacomb.druid.swing.DBaseButton

setBoldFont() - Method in class org.catacomb.druid.swing.DEditorPane

setBoldFont() - Method in class org.catacomb.druid.swing.DLabel

setBoldFont() - Method in class org.catacomb.druid.xtext.base.Guise

setBoolean(String, boolean) - Method in interface org.catacomb.interlish.structure.FlatDataStore

setBooleanState(Boolean) - Method in class org.catacomb.druid.swing.TristateCheckBox

Set the new state to either SELECTED, NOT_SELECTED or DONT_CARE.

setBooleanValue(BooleanValue) - Method in class org.catacomb.druid.gui.edit.DruCheckbox

setBooleanValue(BooleanValue) - Method in interface org.catacomb.interlish.structure.BooleanValueEditor

setBorderBg(Color) - Method in class org.catacomb.graph.gui.DataDisplay

setBorderBg(Color) - Method in class org.catacomb.graph.gui.GraphColors

setBorderFg(Color) - Method in class org.catacomb.graph.gui.GraphColors

setBorderLayout(int, int) - Method in class org.catacomb.druid.gui.base.DruPanel

setBorderLayout() - Method in class org.catacomb.druid.swing.DPanel

setBorderLayout(int, int) - Method in class org.catacomb.druid.swing.DPanel

setBoundary(Position[]) - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

setBox(boolean) - Method in class org.catacomb.druid.chunk.MouseModeController

setBrightness(double) - Method in class org.textensor.vis.SceneGraphViewer

setBuildPaintInstructor(BuildPaintInstructor) - Method in class org.catacomb.graph.gui.DataDisplay

setBuildPaintInstructor(BuildPaintInstructor) - Method in class org.catacomb.graph.gui.DrawingCanvas

setBuildPaintInstructor(BuildPaintInstructor) - Method in class org.catacomb.graph.gui.PickWorldCanvas

setBuildPoints(boolean) - Method in class org.catacomb.graph.arbor.SegmentGraphPainter

setBySetter(String, Object) - Method in class org.catacomb.interlish.reflect.ReflectionWrapper

setByte(int, byte) - Method in class org.catacomb.movie.gif.ByteAccumulator

setByte(int, int) - Method in class org.catacomb.movie.gif.ByteAccumulator

setCache(int) - Method in interface org.catacomb.graph.gui.Pickable

setCache(int) - Method in class org.catacomb.graph.gui.PickablePoint

setCache(int) - Method in class org.catacomb.graph.gui.PickableRegion

setCachedObject(Object) - Method in class org.catacomb.druid.manifest.DecFile

setCachedPosition(int, int, int, int) - Method in class org.catacomb.druid.xtext.base.TextBlock

setCachedText(String) - Method in class org.catacomb.druid.manifest.DecFile

setCanvasColor(Color) - Method in class org.catacomb.druid.gui.base.DruAssemblyPanel

setCanvasColor(Color) - Method in interface org.catacomb.interlish.interact.Workbench

setCanvasSize(int, int) - Method in class org.catacomb.graph.gui.Builder

setCanvasSize(int, int) - Method in class org.catacomb.graph.gui.WorldTransform

setCardLayout() - Method in class org.catacomb.druid.swing.DInfoArea

setCardLayout() - Method in class org.catacomb.druid.swing.DScrollablePanel

setCardLayout() - Method in class org.catacomb.druid.swing.DToolablePanel

setCaretBlock(TextBlock) - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

setCaretPos(int) - Method in class org.catacomb.druid.xtext.canvas.KeyWriter

setCatalyzedReactionData(int, int, int, int, int[][], int[][], double) - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

setCellRenderer(DruListCellRenderer) - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

setCellRenderer(DruListCellRenderer) - Method in class org.catacomb.druid.gui.edit.DruListPanel

setCenterPosition(double, double, double) - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

setChangeNotifiable(ChangeNotifiable) - Method in class org.catacomb.druid.swing.dnd.RegionBoard

setChangeNotifiable(ChangeNotifiable) - Method in class org.catacomb.druid.xtext.edit.GuiseController

setCheckedIndexes(int[]) - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

setCheckedIndexes(int[]) - Method in class org.catacomb.druid.swing.DCheckboxList

setChildListener(ChildListener, String) - Method in class org.catacomb.interlish.content.PrimitiveValue

setChildListener(ChildListener, String) - Method in interface org.catacomb.interlish.structure.ParentReporter

setChildren(ArrayList<? extends TreeNode>) - Method in class org.catacomb.druid.util.tree.ArrayListNode

setClaimIn() - Method in class org.catacomb.graph.gui.MouseHandler

setClaimOut() - Method in class org.catacomb.graph.gui.MouseHandler

setClaimUndecided() - Method in class org.catacomb.graph.gui.MouseHandler

setClassName(String) - Method in class org.catacomb.act.Classdef

setClasspathAccess() - Method in class org.catacomb.druid.manifest.DecFile

setClickListener(ClickListener) - Method in class org.catacomb.druid.swing.DList

setClickListener(ClickListener) - Method in class org.catacomb.graph.gui.DrawingCanvas

setClickListener(ClickListener) - Method in class org.catacomb.graph.gui.Mouse

setClickListener(ClickListener) - Method in class org.catacomb.graph.gui.PickHandler

setClickListener(ClickListener) - Method in class org.catacomb.graph.gui.WorldCanvas

setCloseActionHide() - Method in class org.catacomb.druid.gui.base.DruFrame

setClosed() - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

setClosure(String) - Method in class org.catacomb.graph.drawing.Shape

setClosure(int) - Method in class org.catacomb.interlish.content.Polypoint

setClosureListener(ClosureListener) - Method in class org.catacomb.druid.swing.DFrame

setColor(Color) - Method in class org.catacomb.druid.gui.edit.DruColorChoice

setColor(Color) - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

setColor(int) - Method in class org.catacomb.graph.drawing.ShapePoint

setColor(SColor) - Method in class org.catacomb.graph.gui.Painter

setColor(Color) - Method in class org.catacomb.graph.gui.Painter

setColor(int) - Method in class org.catacomb.graph.gui.PickablePoint

setColor(Color) - Method in class org.catacomb.graph.gui.PickablePoint

setColor(int, Color) - Method in class org.catacomb.interlish.content.ColorTable

setColor(SColor) - Method in class org.catacomb.interlish.content.ConnectionFlavor

setColorBlack() - Method in class org.catacomb.druid.xtext.base.Guise

setColorBlack() - Method in class org.catacomb.graph.gui.Painter

setColorBlue() - Method in class org.catacomb.graph.gui.Painter

setColorCyan() - Method in class org.catacomb.graph.gui.Painter

setColorDarkGray() - Method in class org.catacomb.graph.gui.Painter

setColorDarkGreen() - Method in class org.catacomb.druid.xtext.base.Guise

setColored3d(boolean) - Method in class org.textensor.vis.IcingPoint

setColorGray() - Method in class org.catacomb.graph.gui.Painter

setColorGreen() - Method in class org.catacomb.graph.gui.Painter

setColorMagenta() - Method in class org.catacomb.graph.gui.Painter

setColorOrange() - Method in class org.catacomb.graph.gui.Painter

setColorRange(double, double) - Method in class org.catacomb.druid.gui.base.DruDataDisplay

setColorRange(double, double) - Method in class org.catacomb.graph.gui.DataDisplay

setColorRange(double, double) - Method in class org.catacomb.graph.gui.Painter

setColorRange(double, double) - Method in class org.catacomb.graph.gui.WorldCanvas

setColorRed() - Method in class org.catacomb.graph.gui.Painter

setColors(DruPanel) - Method in class org.catacomb.druid.gui.base.DruPanel

setColors(DruLabel) - Method in class org.catacomb.druid.gui.base.DruPanel

setColorSet(ColorSet) - Method in class org.catacomb.druid.build.Context

setColorSet(ColorSet) - Method in class org.catacomb.graph.gui.AxisGraphDivider

setColorTable(Color[]) - Method in class org.catacomb.druid.gui.base.DruDataDisplay

setColorTable(ColorTable) - Method in class org.catacomb.druid.swing.GradientPanel

setColorTable(Color[]) - Method in class org.catacomb.graph.gui.DataDisplay

setColorTable(String) - Method in class org.catacomb.graph.gui.DisplayStyleSet

setColorTable(ColorTable) - Method in class org.catacomb.graph.gui.DisplayStyleSet

setColorTable(Color[]) - Method in class org.catacomb.graph.gui.Painter

setColorTable(Color[]) - Method in class org.catacomb.graph.gui.WorldCanvas

setColorValue(ColorValue) - Method in class org.catacomb.druid.gui.edit.DruColorChoice

setColorValue(ColorValue) - Method in interface org.catacomb.interlish.structure.ColorValueEditor

setColorWhite() - Method in class org.catacomb.graph.gui.Painter

setColorYellow() - Method in class org.catacomb.graph.gui.Painter

setColumnNames(String[]) - Method in class org.catacomb.dataview.formats.TableDataHandler

setColumns(int) - Method in class org.catacomb.druid.swing.DTextArea

setConciseTags(boolean) - Method in class org.catacomb.serial.xml.XMLWriter

setConciseTags(boolean) - Method in class org.textensor.xml.XMLWriter

setContent(String) - Method in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

setContent(String) - Method in class org.catacomb.druid.gui.edit.DruHTMLPanel

setContent(Object, String, String) - Static method in class org.catacomb.interlish.interact.Clipboard

setContent(Object) - Method in class org.catacomb.serial.xml.XMLHolder

setContent(Object) - Method in class org.textensor.xml.XMLReader.XMLHolder

setContentLoader(ContentLoader) - Static method in class org.catacomb.interlish.service.ResourceAccess

setContext(String) - Method in class org.catacomb.druid.swing.DPlainTextEditor

setContext(String[], SelectionActor) - Method in class org.catacomb.graph.gui.GraphContextMenu

setContext(String, Object) - Method in class org.catacomb.interlish.reflect.ReflectionWrapper

setContext(int) - Static method in class org.catacomb.interlish.service.Env

setContext(String[], SelectionActor) - Method in interface org.catacomb.interlish.structure.ContextMenu

setContext(String, Object) - Method in interface org.catacomb.interlish.structure.SettableStructure

setContextApplet() - Static method in class org.catacomb.interlish.service.Env

setContingencyGroup(ContingencyGroup) - Method in class org.catacomb.druid.gui.edit.DruToggleButton

setControllerPath(String) - Method in class org.catacomb.druid.gui.base.DruRoot

setCursor(String) - Method in class org.catacomb.graph.gui.BaseCanvas

setCursor(String) - Method in interface org.catacomb.interlish.structure.Repaintable

setCurviness(double) - Method in class org.catacomb.graph.drawing.Shape

setDashedStroke(double) - Method in class org.catacomb.graph.gui.Painter

setData(double[][]) - Method in class org.catacomb.dataview.formats.TableDataHandler

setData(double[], double[]) - Method in class org.catacomb.dataview.Plot

setDataBackground(Color) - Method in class org.catacomb.graph.gui.BaseCanvas

setDataBackground(Color) - Method in class org.catacomb.interlish.content.ColorSet

setDataBg(Color) - Method in class org.catacomb.graph.gui.DataDisplay

setDataForeground(Color) - Method in class org.catacomb.interlish.content.ColorSet

setDataHandler(DataHandler) - Method in class org.catacomb.dataview.gui.BasicPlotController

setDataHandler(DataHandler) - Method in class org.catacomb.dataview.gui.DViewPlotController

setDataHandler(DataHandler) - Method in class org.catacomb.dataview.gui.Mesh2plusTimeController

setDataSource(DataExtractor) - Method in class org.catacomb.dataview.DataPlotPainter

setDataSource(DataExtractor) - Method in class org.catacomb.dataview.FrameController

setDataviewController(DataviewController) - Method in class org.catacomb.dataview.FrameController

setDecoration(String, BranchGroup, boolean) - Method in class org.textensor.vis.SceneGraphViewer

setDecorationVisibility(String, boolean) - Method in class org.textensor.vis.SceneGraphViewer

setDefaultColorTable() - Method in class org.catacomb.graph.gui.Painter

setDefaultFolderForMode(String, File) - Method in class org.catacomb.druid.util.FileChooser

setDefaultPivotOrders() - Method in class org.catacomb.druid.util.tree.RelationTree

setDefaultStyleSheet() - Method in class org.catacomb.druid.swing.DHTMLPane

setDelay(int) - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Sets the delay time between each frame, or changes it for subsequent frames (applies to last frame added).

setDeltaZ(double) - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

setDependentDivider(VerticalAxisGraphDivider) - Method in class org.catacomb.graph.gui.AboveBelowSplitPanel

setDescription(String) - Method in interface org.catacomb.interlish.structure.Describable

setDialog(DruDialog) - Method in class org.catacomb.druid.gui.base.DruAutonomousDialog

setDiffusionConstants(double[]) - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

setDims(int, int) - Method in class org.catacomb.numeric.math.Matrix

setDims(int, int) - Method in class org.textensor.stochdiff.numeric.math.Matrix

setDisplays(ArrayList<Object>) - Method in class org.catacomb.dataview.DataviewController

setDisplayVariable(int) - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

setDispose(int) - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Sets the GIF frame disposal code for the last added frame and any subsequent frames.

setDividerLocation(int) - Method in class org.catacomb.graph.gui.AboveBelowSplitPanel

setDividerSize(int) - Method in class org.catacomb.graph.gui.AboveBelowSplitPanel

setDoc(String) - Method in class org.catacomb.druid.gui.base.DruRoot

setDocDisplay(DocDisplay) - Method in class org.catacomb.druid.xtext.base.DocStore

setDouble(String, double) - Method in interface org.catacomb.interlish.structure.FlatDataStore

setDoubleValue(DoubleValue) - Method in class org.catacomb.druid.gui.edit.DruFloat

setDoubleValue(DoubleValue) - Method in interface org.catacomb.interlish.structure.DoubleValueEditor

setDownBlock(DownBlock) - Method in class org.catacomb.druid.xtext.base.ContainerBlock

setDragImage(BufferedImage, Point) - Method in class org.catacomb.druid.swing.dnd.DdndTransferable

setDragImage(BufferedImage, Point) - Method in class org.catacomb.druid.swing.dnd.DragAndDrop

setDragSource(Object) - Method in class org.catacomb.druid.swing.dnd.DragAndDrop

setDropee(Object) - Method in class org.catacomb.druid.swing.DDropTextField

setDruMenuBar(DruMenuBar) - Method in class org.catacomb.druid.gui.base.DruFrame

setDruPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruAppletPrep

setDruPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruDialog

setDruPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruFrame

setDt(double) - Method in class org.catacomb.be.TimePoint

setDValue(double) - Method in class org.catacomb.serial.xml.XMLToken

setDValue(double) - Method in class org.textensor.xml.XMLToken

setEditable(Object, Object) - Method in class org.catacomb.druid.build.AnnotationConnector

setEditable(boolean) - Method in class org.catacomb.druid.gui.edit.DruExpandingTextArea

setEditable(boolean) - Method in class org.catacomb.druid.gui.edit.DruFloat

setEditable(boolean) - Method in class org.catacomb.druid.gui.edit.DruInt

setEditable(boolean) - Method in class org.catacomb.druid.gui.edit.DruLabelledTextField

setEditable(boolean) - Method in class org.catacomb.druid.gui.edit.DruTextArea

setEditable(boolean) - Method in class org.catacomb.druid.gui.edit.DruTextField

setEditable(boolean) - Method in class org.catacomb.druid.swing.DFloat

setEditable(boolean) - Method in class org.catacomb.druid.swing.DInt

setEditable(boolean) - Method in class org.catacomb.druid.swing.DTextArea

setEditable(boolean) - Method in class org.catacomb.druid.swing.DTextField

setEditable(boolean) - Method in interface org.catacomb.interlish.structure.TextArea

setEditable(boolean) - Method in interface org.catacomb.interlish.structure.TextField

setEffects(ArrayList<Effect>) - Method in class org.catacomb.druid.gui.edit.DruButton

setEffects(ArrayList<Effect>) - Method in class org.catacomb.druid.gui.edit.DruCheckbox

setEffects(ArrayList<Effect>) - Method in class org.catacomb.druid.gui.edit.DruChoice

setEffects(ArrayList<Effect>) - Method in class org.catacomb.druid.gui.edit.DruLabelledTextField

setElement(String, String) - Method in class org.catacomb.druid.load.Settings

setElement(String, String) - Method in class org.catacomb.serial.quickxml.Element

setElements(ArrayList<Element>) - Method in class org.catacomb.serial.om.OmElement

setEmptyBorder(int, int, int, int) - Method in class org.catacomb.druid.gui.base.DruPanel

setEmptyBorder(int, int, int, int) - Method in class org.catacomb.druid.swing.DPanel

setEnabled(boolean) - Method in class org.catacomb.druid.gui.base.DruLabelPanel

setEnabled(boolean) - Method in class org.catacomb.druid.swing.DPopLabel

setEnabled(boolean) - Method in class org.catacomb.druid.swing.DTextArea

setEnabled(boolean) - Method in class org.catacomb.druid.swing.DTextField

setEnabled(boolean) - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

We disable focusing on the component when it is not enabled.

setEnableOnSelection(String) - Method in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

setEnableOnSelection(String) - Method in class org.catacomb.druid.gui.edit.DruMenuItem

setEnvironmentValue(double) - Method in class org.catacomb.numeric.difnet.model.BasicNetStructure

setError() - Method in class org.catacomb.numeric.difnet.model.BasicNetState

setError() - Method in interface org.catacomb.numeric.difnet.NetState

setEtchedBorder(Color) - Method in class org.catacomb.druid.gui.base.DruPanel

setEtchedBorder(Color) - Method in class org.catacomb.druid.swing.DPanel

setEtchedUpBorder(Color) - Method in class org.catacomb.druid.gui.base.DruPanel

setEtchedUpBorder(Color) - Method in class org.catacomb.druid.swing.DPanel

setEvents(SpriteEvents) - Method in class org.catacomb.datalish.SceneConfig

setEvents(SpriteEvents) - Method in class org.catacomb.numeric.data.SceneBlock

setEventSequencePath(String) - Method in class org.catacomb.graph.gui.DataView

setExcluded() - Method in class org.catacomb.util.StringTree

setExposedArea(double) - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

setExtern(Object) - Method in interface org.catacomb.interlish.structure.ExternUser

setFallbackBackgroundColor(Color) - Method in class org.catacomb.druid.gui.base.DruPanel

setFallbackForegroundColor(Color) - Method in class org.catacomb.druid.gui.base.DruPanel

setFg(Color) - Method in class org.catacomb.druid.gui.base.DruLabel

setFg(Color) - Method in class org.catacomb.druid.gui.base.DruPanel

setFg(Color) - Method in class org.catacomb.druid.gui.base.DruTabbedPanel

setFg(Color) - Method in class org.catacomb.druid.gui.edit.DruButton

setFg(Color) - Method in class org.catacomb.druid.gui.edit.DruMenu

setFg(Color) - Method in class org.catacomb.druid.gui.edit.DruRadioButtons

setFg(Color) - Method in class org.catacomb.druid.swing.DBaseButton

setFg(Color) - Method in class org.catacomb.druid.swing.DButton

setFg(Color) - Method in class org.catacomb.druid.swing.DLabel

setFg(Color) - Method in class org.catacomb.druid.swing.DPanel

setFg(Color) - Method in class org.catacomb.druid.swing.DTabbedPane

setFg(Color) - Method in class org.catacomb.druid.swing.DToggleButton

setField(String, String) - Method in class org.catacomb.druid.xtext.data.XItem

setField(Object, String, Object) - Method in class org.catacomb.interlish.reflect.ReflectionConstructor

setField(Object, String, Object) - Method in interface org.catacomb.interlish.structure.Constructor

setField(Object, String, Object) - Method in class org.catacomb.serial.om.ElementConstructor

setField(Object, String, Object) - Method in class org.catacomb.serial.xml.VectorConstructor

setField(Object, String, Object) - Method in class org.textensor.xml.ReflectionInstantiator

setFileSystemAccess(File, String) - Method in class org.catacomb.druid.manifest.DecFile

setFillColor(Color) - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

setFillColor(Color) - Method in class org.catacomb.graph.drawing.Shape

setFilled() - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

setFilter(String) - Method in class org.catacomb.druid.swing.DFileChooser

setFinished() - Method in class org.catacomb.druid.gui.edit.DruProgressReport

setFinished() - Method in class org.catacomb.interlish.report.PrintProgressReport

setFinished() - Method in interface org.catacomb.interlish.structure.ProgressReport

setFixed(boolean) - Method in class org.catacomb.numeric.difnet.model.BasicStructureNode

setFixedAspectRatio(double) - Method in class org.catacomb.druid.gui.base.DruDataDisplay

setFixedAspectRatio(double) - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

setFixedAspectRatio(double) - Method in class org.catacomb.druid.gui.base.DruMovieDisplay

setFixedAspectRatio(double) - Method in class org.catacomb.graph.gui.DataDisplay

setFixedAspectRatio(double) - Method in class org.catacomb.graph.gui.DrawingCanvas

setFixedAspectRatio(double) - Method in class org.catacomb.graph.gui.MovieDisplay

setFixedAspectRatio(double) - Method in class org.catacomb.graph.gui.WorldCanvas

setFixedAspectRatio(double) - Method in class org.catacomb.graph.gui.WorldTransform

setFixedAspectRatio(double) - Method in interface org.catacomb.interlish.structure.GraphicsView

setFixedSize(boolean) - Method in class org.catacomb.druid.swing.DPopLabel

setFixedValue(double) - Method in class org.catacomb.numeric.difnet.model.BasicStructureNode

setFlavor(ConnectionFlavor) - Method in class org.catacomb.graph.arbor.SGAttachmentPoint

setFlip() - Method in class org.catacomb.numeric.difnet.model.BasicStructureLink

setFlowCenter(int, int) - Method in class org.catacomb.druid.gui.base.DruPanel

setFlowCenter(int, int) - Method in class org.catacomb.druid.swing.DPanel

setFlowLayout() - Method in class org.catacomb.druid.gui.base.DruPanel

setFlowLayout() - Method in class org.catacomb.druid.swing.DPanel

setFlowLeft(int, int) - Method in class org.catacomb.druid.gui.base.DruPanel

setFlowLeft(int, int) - Method in class org.catacomb.druid.swing.DPanel

setFlowRight(int, int) - Method in class org.catacomb.druid.gui.base.DruPanel

setFlowRight(int, int) - Method in class org.catacomb.druid.swing.DPanel

setFlux(DiffusibleQuantity, double) - Method in class org.catacomb.numeric.difnet.model.BasicStateNode

setFlux(DiffusibleQuantity, double) - Method in interface org.catacomb.numeric.difnet.StateNode

setFocus(double, double) - Method in class org.catacomb.druid.gui.edit.DruProgressReport

setFocus(double, double) - Method in class org.catacomb.interlish.report.PrintProgressReport

setFocus(double, double) - Method in interface org.catacomb.interlish.structure.ProgressReport

setFocusAction(String) - Method in class org.catacomb.druid.gui.edit.DruLabelledTextField

setFont(Font) - Method in class org.catacomb.druid.swing.DTextArea

setFontBold() - Method in class org.catacomb.druid.gui.base.DruLabel

setFontBold() - Method in class org.catacomb.druid.gui.base.DruLabelPanel

setFontBold() - Method in class org.catacomb.druid.swing.DLabel

setFontColor(Color) - Method in class org.catacomb.druid.xtext.base.Guise

setFontFamily(String) - Method in class org.catacomb.druid.xtext.base.Guise

setFontSize(int) - Method in class org.catacomb.druid.gui.edit.DruExpandingTextArea

setFontSize(int) - Method in class org.catacomb.druid.gui.edit.DruTextArea

setFontSize(int) - Method in class org.catacomb.druid.swing.DTextArea

setFontSize(String) - Method in class org.catacomb.druid.xtext.base.Guise

setFontStyle(String) - Method in class org.catacomb.druid.xtext.base.Guise

setForeground(Color) - Method in class org.catacomb.interlish.content.ColorSet

setFourMatrix(double[]) - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

setFourMatrix(double[]) - Method in class org.catacomb.graph.gui.DrawingCanvas

setFourMatrix(double[]) - Method in class org.catacomb.graph.gui.WorldCanvas

setFourMatrix(double[]) - Method in class org.textensor.vis.Icing3DViewer

setFourMatrix(double[]) - Method in class org.textensor.vis.SceneGraphViewer

setFourMatrix(double[]) - Method in interface org.textensor.vis.Visualizer

setFraction(double) - Method in class org.catacomb.druid.gui.edit.DruProgressReport

setFraction(double) - Method in class org.catacomb.interlish.report.PrintProgressReport

setFraction(double) - Method in interface org.catacomb.interlish.structure.ProgressReport

setFrame(int) - Method in interface org.catacomb.dataview.formats.DataHandler

setFrame(int) - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

setFrame(int) - Method in class org.catacomb.dataview.formats.MeshSummary

setFrame(int) - Method in class org.catacomb.dataview.formats.PolyLineHandler

setFrame(int) - Method in class org.catacomb.dataview.formats.SWCDisplay

setFrame(int) - Method in class org.catacomb.dataview.formats.TableDataHandler

setFrame(int) - Method in interface org.catacomb.graph.gui.MoviePaintInstructor

setFrame(int) - Method in class org.catacomb.graph.gui.SpriteMoviePainter

setFrameDisplay(FrameDisplay) - Method in class org.catacomb.dataview.gui.FramePlayerController

setFrameRate(float) - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Sets frame rate in frames per second.

setFree() - Method in class org.catacomb.serial.quickxml.Element

setFromSlider(double) - Method in class org.catacomb.druid.swing.DFloat

setFromSlider(int) - Method in class org.catacomb.druid.swing.DInt

setFullRepaint() - Method in class org.catacomb.graph.gui.MouseHandler

setGraphBg(Color) - Method in class org.catacomb.graph.gui.GraphColors

setGraphics(Graphics2D) - Method in class org.catacomb.graph.gui.Painter

setGraphics(Graphics2D) - Method in class org.catacomb.graph.gui.PointPainter

setGray() - Method in class org.catacomb.interlish.content.ColorSet

setGridBackground(Color) - Method in class org.catacomb.graph.gui.GridPainter

setGridColor(Color) - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

setGridColor(Color) - Method in class org.catacomb.graph.gui.DrawingCanvas

setGridColor(Color) - Method in class org.catacomb.graph.gui.GridPainter

setGridColor(Color) - Method in class org.catacomb.graph.gui.PickWorldCanvas

setGridLayout(int, int, int, int) - Method in class org.catacomb.druid.gui.base.DruPanel

setGridLayout(int, int, int, int) - Method in class org.catacomb.druid.swing.DPanel

setGroup(ButtonGroup) - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

setGroupAction(String) - Method in class org.catacomb.druid.gui.edit.DruToggleButton

setGroupID(String) - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

setHeadings(String[]) - Method in class org.catacomb.numeric.data.DataTable

setHeight(int) - Method in class org.catacomb.graph.gui.WorldTransform

setHelpText(String) - Method in interface org.catacomb.interlish.structure.Helpable

setHookupBoard(HookupBoard) - Method in class org.catacomb.druid.build.DruidTargetStore

setHookupBoard(HookupBoard) - Method in class org.catacomb.druid.build.GUIStore

setHorizontalScrollbarAlways() - Method in class org.catacomb.druid.gui.base.DruScrollPanel

setHorizontalScrollbarAlways() - Method in class org.catacomb.druid.swing.DScrollPane

setHorizontalScrollbarAsNeeded() - Method in class org.catacomb.druid.gui.base.DruScrollPanel

setHorizontalScrollbarAsNeeded() - Method in class org.catacomb.druid.swing.DScrollPane

setHorizontalScrollbarNever() - Method in class org.catacomb.druid.gui.base.DruScrollPanel

setHorizontalScrollbarNever() - Method in class org.catacomb.druid.swing.DScrollPane

setHyperlinkHandler(HyperlinkHandler) - Method in class org.catacomb.druid.swing.DHTMLPane

setIconSource(String) - Method in class org.catacomb.druid.gui.edit.DruButton

setIconSource(String) - Method in class org.catacomb.druid.swing.DBaseButton

setID(String) - Method in class org.catacomb.druid.build.Druid

setID(String) - Method in class org.catacomb.druid.gui.base.DruAutonomousPanel

setID(String) - Method in class org.catacomb.druid.gui.base.DruDialog

setID(String) - Method in class org.catacomb.druid.gui.base.DruFrame

setID(String) - Method in class org.catacomb.druid.gui.base.DruPanel

setID(String) - Method in class org.catacomb.druid.gui.edit.DruMenu

setID(String) - Method in class org.catacomb.druid.xtext.base.Guise

setID(String) - Method in class org.catacomb.graph.arbor.SGAttachmentPoint

setID(String) - Method in class org.catacomb.graph.gui.DataView

setID(String) - Method in class org.catacomb.graph.gui.DisplayStyleSet

setID(String) - Method in class org.catacomb.graph.gui.ViewSet

setID(String) - Method in class org.catacomb.interlish.content.DocumentedComponent

setID(String) - Method in interface org.catacomb.interlish.structure.IDable

setID(String) - Method in class org.catacomb.numeric.data.DataTable

setID(String) - Method in class org.textensor.vis.SceneItem

setIDWith(MorphPoint, String) - Method in class org.textensor.stochdiff.model.MorphPoint

setIDWith(TreePoint, String) - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

setImage(String) - Method in class org.catacomb.druid.gui.edit.DruButton

setImportContext(ImportContext) - Method in class org.catacomb.interlish.reflect.ReflectionConstructor

setIndeterminate(boolean) - Method in class org.catacomb.druid.gui.edit.DruProgressReport

setIndeterminate(boolean) - Method in class org.catacomb.interlish.report.PrintProgressReport

setIndeterminate(boolean) - Method in interface org.catacomb.interlish.structure.ProgressReport

setIndex(int) - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

setIndex(int) - Method in class org.catacomb.graph.drawing.Shape

setIndex(int) - Method in class org.catacomb.graph.drawing.ShapePoint

setIndex(int) - Method in class org.textensor.stochdiff.model.Specie

setInfo(String) - Method in class org.catacomb.act.Classdef

setInfo(String) - Method in class org.catacomb.act.FunctionSignature

setInfo(String) - Method in class org.catacomb.act.MethodSignature

setInfo(String) - Method in class org.catacomb.act.MethodStub

setInfo(String) - Method in class org.catacomb.druid.gui.base.DruPanel

setInfo(String) - Method in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

setInfo(String) - Method in class org.catacomb.druid.gui.edit.DruMenuItem

setInfo(String) - Method in class org.catacomb.interlish.content.DocumentedComponent

setInfo(String) - Method in interface org.catacomb.interlish.structure.Infoable

setInfoAgregator(InfoAggregator) - Method in class org.catacomb.druid.build.Context

setInfoDisplay(InfoDisplay) - Method in interface org.catacomb.druid.gui.base.InfoSource

setInfoReceiver(InfoReceiver) - Method in class org.catacomb.druid.build.DruidTargetStore

setInfoReceiver(InfoReceiver) - Method in class org.catacomb.druid.build.GUIStore

setInfoReceiver(InfoReceiver) - Method in class org.catacomb.druid.build.InfoAggregator

setInfoReceiver(InfoReceiver) - Method in class org.catacomb.druid.gui.base.DruPanel

setInfoReceiver(InfoReceiver) - Method in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

setInfoReceiver(InfoReceiver) - Method in class org.catacomb.druid.gui.edit.DruMenuItem

setInfoReceiver(InfoReceiver) - Method in interface org.catacomb.interlish.interact.Workbench

setInfoReceiver(InfoReceiver) - Method in interface org.catacomb.interlish.structure.InfoExporter

setInitialConditions(InitialConditions) - Method in class org.textensor.stochdiff.model.SDRun

setInitialValue(boolean) - Method in class org.catacomb.druid.gui.edit.DruCheckbox

setInitialValue(boolean) - Method in class org.catacomb.druid.gui.edit.DruToggleButton

setInitialValue(double) - Method in class org.catacomb.numeric.difnet.model.BasicNetStructure

setInitialValue(double) - Method in class org.catacomb.numeric.difnet.model.BasicStructureNode

setInstantiator(Instantiator) - Method in class org.catacomb.interlish.reflect.ReflectionConstructor

setInt(String, int) - Method in interface org.catacomb.interlish.structure.FlatDataStore

setIntColor(int) - Method in class org.catacomb.graph.gui.Painter

setIntegerValue(IntegerValue) - Method in class org.catacomb.druid.gui.edit.DruInt

setIntegerValue(IntegerValue) - Method in interface org.catacomb.interlish.structure.IntegerValueEditor

setIntFromStatic(Object, String, String) - Method in class org.catacomb.interlish.reflect.ReflectionConstructor

setIntFromStatic(Object, String, String) - Method in interface org.catacomb.interlish.structure.Constructor

setIntFromStatic(Object, String, String) - Method in class org.catacomb.serial.om.ElementConstructor

setIntFromStatic(Object, String, String) - Method in class org.catacomb.serial.xml.VectorConstructor

setIntFromStatic(Object, String, String) - Method in class org.textensor.xml.ReflectionInstantiator

setIntPosition(IntPosition) - Method in class org.catacomb.graph.drawing.Shape

setIsPaused() - Method in class org.catacomb.druid.chunk.MoviePlayController

setIsPaused() - Method in interface org.catacomb.interlish.structure.MovieStateDisplay

setItems(String[]) - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

setItems(ArrayList<? extends Object>) - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

setItems(Object[]) - Method in class org.catacomb.druid.gui.edit.DruListPanel

setItems(ArrayList<? extends Object>) - Method in class org.catacomb.druid.gui.edit.DruListPanel

setItems(String[]) - Method in class org.catacomb.druid.gui.edit.DruMenu

setItems(String[]) - Method in class org.catacomb.druid.gui.edit.DruToggleListPanel

setItems(ArrayList<? extends Object>) - Method in class org.catacomb.druid.gui.edit.DruToggleListPanel

setItems(String[]) - Method in class org.catacomb.druid.swing.DCheckboxList

setItems(Object[]) - Method in class org.catacomb.druid.swing.DCheckboxList

setItems(ArrayList<? extends Object>) - Method in interface org.catacomb.druid.util.ListDisplay

setItems(String[]) - Method in interface org.catacomb.interlish.structure.PopulableMenu

setItemsTree(String[]) - Method in class org.catacomb.druid.gui.edit.DruMenu

setItemsTree(String[]) - Method in interface org.catacomb.interlish.structure.PopulableMenu

setIthDouble(int, double) - Method in class org.catacomb.interlish.content.QuantifiedListValue

setJarReader(CustomJarReader) - Method in class org.catacomb.dataview.read.JarImportContext

setKeyedList(KeyedList<? extends IDd>) - Method in class org.catacomb.druid.gui.edit.DruListPanel

setKeyedList(KeyedList<? extends IDd>) - Method in interface org.catacomb.interlish.structure.List

setLabel(String) - Method in class org.catacomb.druid.gui.edit.DruFloat

setLabel(String) - Method in class org.catacomb.druid.gui.edit.DruInt

setLabel(String) - Method in class org.catacomb.druid.swing.DFloat

setLabel(String) - Method in class org.catacomb.druid.swing.DFloatSlider

setLabel(String) - Method in class org.catacomb.druid.swing.DInt

setLabel(String) - Method in class org.catacomb.druid.swing.DPopLabel

setLabel(String) - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

setLabel(String) - Method in class org.catacomb.graph.gui.XAxisCanvas

setLabel(String) - Method in class org.catacomb.graph.gui.YAxisCanvas

setLabel(String) - Method in class org.catacomb.interlish.content.DocumentedComponent

setLabel(String) - Method in interface org.catacomb.interlish.structure.Labelable

setLabel(String) - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

setLabel(String) - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

setLabel(String) - Method in class org.textensor.vis.IcingPoint

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DBaseButton

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DCheckbox

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DCheckboxList

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DCheckboxMenuItem

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DChoice

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DComboBox

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DDropCanvas

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DFloat

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DFloatSlider

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DImageButton

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DInfoArea

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DInt

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DList

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DMenuItem

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DPlainTextEditor

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DPopLabel

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DRadioButton

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DRadioButtons

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DSimpleSlider

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DSlider

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DTextArea

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DTextField

setLabelActor(LabelActor) - Method in class org.catacomb.druid.swing.DValueHistory

setLabelPosition(double, double) - Method in class org.catacomb.graph.gui.Labellee

setLabels(boolean) - Method in class org.catacomb.druid.chunk.MouseModeController

setLabelText(String) - Method in class org.catacomb.druid.gui.edit.DruButton

setLabelText(String) - Method in class org.catacomb.druid.swing.DBaseButton

setLightsPercent(int) - Method in class org.textensor.vis.Icing3DViewer

setLightsPercent(int) - Method in class org.textensor.vis.SceneGraphViewer

setLightsPercent(int) - Method in interface org.textensor.vis.Visualizer

setLimits(double[]) - Method in class org.catacomb.druid.gui.base.DruDataDisplay

setLimits(double[]) - Method in class org.catacomb.druid.gui.base.DruMovieDisplay

setLimits(double[]) - Method in class org.catacomb.graph.gui.DataDisplay

setLimits(double[]) - Method in class org.catacomb.graph.gui.MovieDisplay

setLineBorder(int) - Method in class org.catacomb.druid.gui.edit.DruExpandingTextArea

setLineBorder(int) - Method in class org.catacomb.druid.gui.edit.DruLabelledTextField

setLineBorder(int) - Method in class org.catacomb.druid.gui.edit.DruTextField

setLineBorder(int) - Method in class org.catacomb.druid.swing.DTextArea

setLineBorder(int) - Method in class org.catacomb.druid.swing.DTextField

setLineColor(Color) - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

setLineColor(Color) - Method in class org.catacomb.graph.drawing.Shape

setLineColor(Color) - Method in class org.catacomb.graph.gui.DisplayStyleSet

setLineStyle(String) - Method in class org.catacomb.graph.gui.DisplayStyleSet

setLineWidth(double) - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

setLineWidth(double) - Method in class org.catacomb.graph.drawing.Shape

setLineWidthName(String) - Method in class org.catacomb.graph.gui.DisplayStyleSet

setLinkAction(String) - Method in class org.catacomb.druid.gui.edit.DruHTMLPanel

setLinks(BasicStateLink[]) - Method in class org.catacomb.numeric.difnet.model.BasicNetState

setLinks(BasicStructureLink[]) - Method in class org.catacomb.numeric.difnet.model.BasicNetStructure

setListChild(Object, Object) - Method in class org.catacomb.serial.xml.XMLReader

setListChild(Object, Object) - Method in class org.textensor.xml.XMLReader

setListWatcher(ListWatcher) - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

setListWatcher(ListWatcher) - Method in class org.catacomb.druid.gui.edit.DruToggleListPanel

setLocation(int, int) - Method in class org.catacomb.druid.gui.base.DruAutonomousDialog

setLocation(int, int) - Method in class org.catacomb.druid.gui.base.DruDialog

setLocation(int, int) - Method in class org.catacomb.druid.gui.base.DruEditorWindow

setLocation(int, int) - Method in class org.catacomb.druid.gui.base.DruFrame

setLocation(int, int) - Method in interface org.catacomb.interlish.structure.FrameShowable

setLog(InfoLog) - Method in class org.catacomb.druid.gui.edit.DruLoggedButton

setLog(InfoLog) - Static method in class org.catacomb.interlish.report.UserLog

setLog(InfoLog) - Method in interface org.catacomb.interlish.structure.LogMessageGenerator

setLogNotificand(LogNotificand) - Method in class org.catacomb.druid.guimodel.Log

setLogNotificand(LogNotificand) - Method in interface org.catacomb.interlish.structure.InfoLog

setMainFrame(DruFrame) - Method in class org.catacomb.dataview.DataviewController

setMainFrame(DruFrame) - Method in class org.catacomb.druid.gui.base.DruEditorWindow

setMainPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruAutonomousPanel

setMainPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruInsert

setMainState(MainState) - Method in class org.catacomb.serial.state.ModelState

setMainType(MainType) - Method in class org.catacomb.serial.state.ModelState

setMargins(int, int, int, int) - Method in class org.catacomb.graph.gui.WorldTransform

setMarketplace(Marketplace) - Method in interface org.catacomb.interlish.structure.Marketeer

setMean(double) - Method in class org.catacomb.numeric.function.AR1Noise

setMenu(DruMenu) - Method in class org.catacomb.druid.gui.edit.DruCheckboxTreePanel

setMenu(DruMenu) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

setMenu(DMenu) - Method in class org.catacomb.druid.swing.DCheckboxTree

setMenu(DMenu) - Method in class org.catacomb.druid.swing.DTree

setMenued(Menued) - Method in class org.catacomb.druid.swing.DPopLabel

setMenuOptions(ArrayList<String>) - Method in class org.catacomb.druid.swing.DPopLabel

setMenuOptions(String[]) - Method in class org.catacomb.druid.swing.DPopLabel

setMenuOptions(String[]) - Method in interface org.catacomb.druid.swing.Menued

setMethodName(String) - Method in class org.catacomb.act.MethodStub

setMethodName(String) - Method in class org.catacomb.druid.gui.edit.DruGCPanel

setMnemonic(int) - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

setModal(boolean) - Method in class org.catacomb.druid.build.Druid

setModal(boolean) - Method in class org.catacomb.druid.gui.base.DruAutonomousDialog

setModal(boolean) - Method in class org.catacomb.druid.gui.base.DruDialog

setModal(boolean) - Method in interface org.catacomb.interlish.structure.Dialog

setModality(String) - Method in class org.catacomb.druid.market.ProducerConsumerBoard

setMode(String, String) - Method in class org.catacomb.dataview.DataviewController

setMode(int) - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

setMode(String, String) - Method in class org.catacomb.graph.gui.DataDisplay

setMode(String, boolean) - Method in class org.catacomb.graph.gui.DataDisplay

setMode(String, String) - Method in class org.catacomb.graph.gui.MovieDisplay

setMode(String, boolean) - Method in class org.catacomb.graph.gui.MovieDisplay

setMode(String, String) - Method in class org.catacomb.graph.gui.WorldCanvas

setMode(String, boolean) - Method in class org.catacomb.graph.gui.WorldCanvas

setMode(int) - Method in class org.catacomb.graph.gui.WorldCanvas

setMode(String, String) - Method in interface org.catacomb.interlish.structure.ModeSettable

setMode(String, boolean) - Method in interface org.catacomb.interlish.structure.ModeSettable

setModeController(ModeController) - Method in class org.catacomb.druid.gui.base.DruAssemblyPanel

setModeController(ModeController) - Method in class org.catacomb.druid.gui.base.DruDataDisplay

setModeController(ModeController) - Method in class org.catacomb.druid.gui.base.DruMovieDisplay

setModeController(ModeController) - Method in interface org.catacomb.interlish.interact.Workbench

setModelInstantiator(Instantiator) - Method in class org.catacomb.interlish.service.ScriptManager

setModeSettable(ModeSettable) - Method in interface org.catacomb.interlish.structure.ModeSetter

setMorphology(Morphology) - Method in class org.textensor.stochdiff.model.SDRun

setMouseActor(MouseActor) - Method in class org.catacomb.druid.swing.DBaseButton

setMouseActor(MouseActor) - Method in class org.catacomb.druid.swing.DCheckbox

setMouseActor(MouseActor) - Method in class org.catacomb.druid.swing.DFillGuage

setMouseActor(MouseActor) - Method in class org.catacomb.druid.swing.DFloat

setMouseActor(MouseActor) - Method in class org.catacomb.druid.swing.DFloatSlider

setMouseActor(MouseActor) - Method in class org.catacomb.druid.swing.DLabel

setMouseActor(MouseActor) - Method in class org.catacomb.druid.swing.DPanel

setMouseActor(MouseActor) - Method in class org.catacomb.druid.swing.DSlider

setMouseActor(MouseActor) - Method in interface org.catacomb.interlish.structure.MouseSource

setMouseMode(String) - Method in class org.catacomb.druid.chunk.MouseModeController

setMouseMode(String) - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

setMouseMode(String) - Method in class org.catacomb.graph.gui.DrawingCanvas

setMouseMode(String) - Method in class org.catacomb.graph.gui.WorldCanvas

setMovie(SpriteAnimation) - Method in class org.catacomb.druid.gui.base.DruMovieDisplay

setMovie(SpriteAnimation) - Method in class org.catacomb.graph.gui.MovieDisplay

setMovie(SpriteAnimation) - Method in class org.catacomb.graph.gui.SpriteMoviePainter

setMovieController(MovieController) - Method in class org.catacomb.druid.gui.base.DruMovieDisplay

setMovieOperator(MovieOperator) - Method in class org.catacomb.druid.chunk.MoviePlayController

setMovieOperator(MovieOperator) - Method in interface org.catacomb.interlish.structure.MovieController

setMoviePaintInstructor(MoviePaintInstructor) - Method in class org.catacomb.graph.gui.MovieDisplay

setMoviePath(String) - Method in class org.catacomb.graph.gui.DataView

setMovieStateDisplay(MovieStateDisplay) - Method in class org.catacomb.graph.gui.MovieDisplay

setMovieStateDisplay(MovieStateDisplay) - Method in interface org.catacomb.interlish.structure.MovieOperator

setMulti(boolean) - Method in class org.catacomb.druid.chunk.MouseModeController

setMultiIndexes(int[]) - Method in class org.catacomb.graph.gui.DataView

setMultiOrdinate(String) - Method in class org.catacomb.graph.gui.DataView

setMultiple() - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

setMultiple() - Method in class org.catacomb.druid.gui.edit.DruListPanel

setMultiple() - Method in class org.catacomb.druid.swing.DCheckboxList

setMultiple() - Method in class org.catacomb.druid.swing.DList

setName(String) - Method in class org.catacomb.druid.gui.base.DruRoot

setName(String) - Method in class org.catacomb.druid.swing.DDialog

setName(String) - Method in class org.catacomb.druid.swing.DFrame

setName(String) - Method in interface org.catacomb.interlish.structure.Namable

setName(String) - Method in class org.catacomb.interlish.version.BuildInfo

setName(String) - Method in class org.catacomb.numeric.data.DataItem

setName(String) - Method in class org.catacomb.serial.om.OmElement

setName(String) - Method in class org.textensor.stochdiff.neuroml.MetaItem

setNames(String) - Method in class org.catacomb.numeric.data.VectorSet

setNColor(int) - Method in class org.catacomb.interlish.content.ColorTable

setNColumn(int) - Method in class org.catacomb.numeric.data.DataTable

setNext(Block) - Method in class org.catacomb.druid.xtext.base.Block

setNextPaletteColor() - Method in class org.catacomb.druid.xtext.base.Guise

setNFrame(int) - Method in class org.catacomb.druid.gui.edit.DruSlider

setNoBorder() - Method in class org.catacomb.druid.swing.DScrollPane

setNodeA(StructureNode) - Method in class org.catacomb.numeric.difnet.model.BasicStructureLink

setNodeA(StructureNode) - Method in interface org.catacomb.numeric.difnet.StructureLink

setNodeB(StructureNode) - Method in class org.catacomb.numeric.difnet.model.BasicStructureLink

setNodeB(StructureNode) - Method in interface org.catacomb.numeric.difnet.StructureLink

setNodes(BasicStateNode[]) - Method in class org.catacomb.numeric.difnet.model.BasicNetState

setNodes(BasicStructureNode[]) - Method in class org.catacomb.numeric.difnet.model.BasicNetStructure

setNoGrid() - Method in class org.catacomb.graph.gui.PickWorldCanvas

setNoHorizontalScroll() - Method in class org.catacomb.druid.gui.edit.DruLogPanel

setNoneMultiIndexes() - Method in class org.catacomb.graph.gui.DataView

setNormalStroke() - Method in class org.catacomb.graph.gui.Painter

setNPoint(int) - Method in class org.catacomb.druid.swing.DSlider

setNSelectable(int) - Method in interface org.catacomb.interlish.structure.Selector

setNum(String) - Method in class org.catacomb.interlish.version.BuildInfo

setObject(String, Object) - Method in interface org.catacomb.interlish.structure.FlatDataStore

setObjectValue(String, Object) - Method in class org.catacomb.druid.build.DruidTargetStore

setObjectValue(Object) - Method in interface org.catacomb.interlish.structure.ObjectValueSettable

setObjectValue(String, Object) - Method in interface org.catacomb.interlish.structure.TargetStore

setOff() - Method in class org.catacomb.druid.swing.ToggleItem

setOffIcon(ImageIcon) - Method in class org.catacomb.druid.swing.DToggleButton

setOffImage(String) - Method in class org.catacomb.druid.gui.edit.DruToggleButton

setOK() - Method in class org.catacomb.numeric.difnet.model.BasicNetState

setOK() - Method in interface org.catacomb.numeric.difnet.NetState

setOn() - Method in class org.catacomb.druid.swing.ToggleItem

setOnGridAxes() - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

setOnGridAxes() - Method in class org.catacomb.graph.gui.DrawingCanvas

setOnGridAxes() - Method in class org.catacomb.graph.gui.GridPainter

setOnGridAxes() - Method in class org.catacomb.graph.gui.PickWorldCanvas

setOnIcon(ImageIcon) - Method in class org.catacomb.druid.swing.DToggleButton

setOnImage(String) - Method in class org.catacomb.druid.gui.edit.DruToggleButton

setOpen() - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

setOptions(String[]) - Method in class org.catacomb.druid.gui.edit.DruChoice

setOptions(String[], String[]) - Method in class org.catacomb.druid.gui.edit.DruChoice

setOptions(String[]) - Method in class org.catacomb.druid.gui.edit.DruMenu

setOptions(String[]) - Method in class org.catacomb.druid.gui.edit.DruMenuButton

setOptions(String[]) - Method in class org.catacomb.druid.gui.edit.DruRadioButtons

setOptions(String[], String[]) - Method in class org.catacomb.druid.gui.edit.DruRadioButtons

setOptions(String[], String[]) - Method in class org.catacomb.druid.swing.DChoice

setOptions(ArrayList<String>) - Method in class org.catacomb.druid.swing.DPopLabel

setOptions(String[], String[]) - Method in class org.catacomb.druid.swing.DRadioButtons

setOptions(String[]) - Method in class org.catacomb.druid.swing.DValueHistory

setOptions(String[]) - Method in interface org.catacomb.interlish.structure.OptionsUser

setOptionsSource(OptionsSource) - Method in class org.catacomb.druid.gui.edit.DruChoice

setOptionsSource(OptionsSource) - Method in class org.catacomb.druid.swing.DChoice

setOrder(int) - Method in class org.catacomb.druid.gui.edit.DruListPanel

setOrder(int) - Method in class org.catacomb.druid.gui.edit.DruScrollingCheckboxListPanel

setOrdinates(String[]) - Method in class org.catacomb.graph.gui.DataView

setOrdinates(ArrayList<String>) - Method in class org.catacomb.graph.gui.DataView

setOrientation(int) - Method in class org.catacomb.druid.swing.split.DSplitterBar

setOrientation(int) - Method in class org.catacomb.druid.swing.split.SplitterLayout

setOutput(Writer) - Method in class org.catacomb.util.DiffPrint.Base

setOutputScheme(OutputScheme) - Method in class org.textensor.stochdiff.model.SDRun

setPackage(String) - Method in class org.catacomb.act.Classdef

setPadding(int) - Method in class org.catacomb.druid.gui.edit.DruButton

setPadding(int, int, int, int) - Method in class org.catacomb.druid.gui.edit.DruButton

setPadding(int) - Method in class org.catacomb.druid.gui.edit.DruExpandingTextArea

setPadding(int) - Method in class org.catacomb.druid.gui.edit.DruTextArea

setPadding(int) - Method in class org.catacomb.druid.swing.DBaseButton

setPadding(int, int, int, int) - Method in class org.catacomb.druid.swing.DBaseButton

setPadding(int) - Method in class org.catacomb.druid.swing.DButton

setPadding(int, int, int, int) - Method in class org.catacomb.druid.swing.DButton

setPadding(int) - Method in class org.catacomb.druid.swing.DTextArea

setPadding(int) - Method in class org.catacomb.druid.swing.DToggleButton

setPadding(int, int, int, int) - Method in class org.catacomb.druid.swing.DToggleButton

setPadding(int) - Method in class org.catacomb.druid.swing.RolloverEffect

setPadding(int, int, int, int) - Method in class org.catacomb.druid.swing.RolloverEffect

setPadding(int) - Method in class org.catacomb.graph.gui.RolloverEffect

setPadding(int, int, int, int) - Method in class org.catacomb.graph.gui.RolloverEffect

setPage(Page) - Method in class org.catacomb.druid.gui.edit.DruHTMLPanel

setPageDataStore(PageDataStore) - Method in class org.catacomb.druid.xtext.canvas.DataBoard

setPageDataStore(PageDataStore) - Method in class org.catacomb.druid.xtext.edit.XRelationTree

setPageDataStore(PageDataStore) - Method in class org.catacomb.druid.xtext.edit.XTypeTree

setPageSupplier(PageSupplier) - Method in class org.catacomb.druid.gui.base.DruBrowserPanel

setPageSupplier(PageSupplier) - Method in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

setPageSupplier(PageSupplier) - Method in class org.catacomb.druid.gui.edit.DruHTMLPanel

setPageSupplier(PageSupplier) - Method in interface org.catacomb.interlish.structure.PageDisplay

setPaintInstructor(PaintInstructor) - Method in class org.catacomb.graph.gui.DataDisplay

setPaintInstructor(PaintInstructor) - Method in class org.catacomb.graph.gui.DrawingCanvas

setPaintInstructor(PaintInstructor) - Method in class org.catacomb.graph.gui.WorldCanvas

setPaintWidthFactor(int) - Method in class org.catacomb.dataview.DataPlotPainter

setPaintWidthFactor(int) - Method in class org.catacomb.dataview.DataviewController

setPan(boolean) - Method in class org.catacomb.druid.chunk.MouseModeController

setPanel(DPanel) - Method in class org.catacomb.druid.swing.DDialog

setPanelListener(PanelListener) - Method in class org.catacomb.druid.swing.DTabbedPane

setParent(DMItem) - Method in class org.catacomb.druid.xtext.base.DMItem

setParent(Assembly) - Method in class org.catacomb.graph.drawing.Shape

setParent(TreeNode) - Method in class org.catacomb.util.StringTree

setParent(TreeNode) - Method in class org.catacomb.util.StringTreeLeaf

setParent(IcingPoint) - Method in class org.textensor.vis.IcingPoint

setParentContainer(DPanel) - Method in class org.catacomb.druid.swing.DTextCanvas

setParentMenu(DruMenu) - Method in class org.catacomb.druid.gui.edit.DruMenu

setPathLocation(String) - Method in interface org.catacomb.interlish.structure.PathLocated

setPathToOpen(String) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

setPathToOpen(String, boolean) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

setPauseButton(DruButton) - Method in class org.catacomb.dataview.FrameController

setPeer(BooleanValue) - Method in class org.catacomb.interlish.content.BooleanValue

setPeer(DoubleValue) - Method in class org.catacomb.interlish.content.DoubleValue

setPickListener(PickListener) - Method in class org.catacomb.graph.gui.DataDisplay

setPickListener(PickListener) - Method in class org.catacomb.graph.gui.DrawingCanvas

setPickListener(PickListener) - Method in class org.catacomb.graph.gui.PickHandler

setPickListener(PickListener) - Method in class org.catacomb.graph.gui.PickWorldCanvas

setPivotChoice(DruChoice) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

setPivotNames(String[]) - Method in class org.catacomb.druid.util.tree.RelationTree

setPivotOrders(String[][]) - Method in class org.catacomb.druid.util.tree.RelationTree

setPixelScalingFromTop(double) - Method in class org.catacomb.graph.gui.Painter

setPixelScalingFromTop(double) - Method in class org.catacomb.graph.gui.WorldTransform

setPlainFont() - Method in class org.catacomb.druid.swing.DBaseButton

setPlainFont() - Method in class org.catacomb.druid.swing.DEditorPane

setPlainFont() - Method in class org.catacomb.druid.swing.DFillGuage

setPlainFont() - Method in class org.catacomb.druid.swing.DLabel

setPlainFont() - Method in class org.catacomb.druid.swing.DList

setPlainFont() - Method in class org.catacomb.druid.swing.DProgressReport

setPlot(String) - Method in interface org.catacomb.dataview.formats.DataHandler

setPlot(String) - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

setPlot(String) - Method in class org.catacomb.dataview.formats.MeshSummary

setPlot(String) - Method in class org.catacomb.dataview.formats.PolyLineHandler

setPlot(String) - Method in class org.catacomb.dataview.formats.SWCDisplay

setPlot(String) - Method in class org.catacomb.dataview.formats.TableDataHandler

setPlot(String) - Method in class org.catacomb.dataview.gui.Mesh2plusTimeController

setPoints(double[][]) - Method in class org.catacomb.graph.gui.PickableRegion

setPoints(double[], double[]) - Method in class org.catacomb.graph.gui.PickableRegion

setPoints(MeshPoint[]) - Method in class org.catacomb.numeric.mesh.DifMesh

setPopupToShow(String) - Method in class org.catacomb.druid.gui.edit.DruMenuButton

setPosition(int, int) - Method in class org.catacomb.druid.xtext.base.TextFloat

setPosition(IntPosition) - Method in class org.catacomb.druid.xtext.base.TextFloat

setPosition(double, double) - Method in class org.catacomb.graph.arbor.SGAttachmentPoint

setPosition(Position) - Method in class org.catacomb.graph.arbor.SGAttachmentPoint

setPosition(Position) - Method in class org.catacomb.graph.drawing.Shape

setPosition(Position) - Method in class org.catacomb.graph.drawing.ShapePoint

setPosition(Position) - Method in class org.catacomb.graph.gui.PickablePoint

setPosition(double, double) - Method in class org.catacomb.graph.gui.PickablePoint

setPosition(double[]) - Method in class org.catacomb.numeric.difnet.CellPoint

setPosition(double, double, double) - Method in class org.catacomb.numeric.difnet.model.BasicStructureNode

setPosition(double, double, double) - Method in interface org.catacomb.numeric.difnet.StructureNode

setPosition(double[]) - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

setPositionIndexes(int, int) - Method in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

setPreferredSize(int, int) - Method in class org.catacomb.druid.gui.base.DruFrame

setPreferredSize(int, int) - Method in class org.catacomb.druid.gui.base.DruPanel

setPreferredSize(Dimension) - Method in class org.catacomb.druid.gui.base.DruPanel

setPreferredSize(int, int) - Method in class org.catacomb.druid.gui.base.DruScrollPanel

setPreferredSize(int, int) - Method in class org.catacomb.druid.gui.edit.DruLogPanel

setPreferredSize(int, int) - Method in class org.catacomb.druid.swing.DFrame

setPreferredSize(int, int) - Method in class org.catacomb.druid.swing.DPanel

setPreferredSize(int, int) - Method in class org.catacomb.graph.gui.BaseCanvas

setPreferredSize(int, int) - Method in interface org.catacomb.interlish.interact.Workbench

setPreformat(boolean) - Method in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

setPreformatted(boolean) - Method in class org.catacomb.druid.gui.edit.DruHTMLPanel

setPrefSize(int, int) - Method in class org.catacomb.druid.swing.DHTMLPane

setPrefSize(int, int) - Method in class org.catacomb.graph.gui.DataDisplay

setPresenter(Presenter) - Method in interface org.catacomb.interlish.structure.Presentable

setPressed(boolean) - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

setPrevious(Block) - Method in class org.catacomb.druid.xtext.base.Block

setPrimitivesOnly() - Method in class org.catacomb.serial.SerializationContext

setPrivate() - Method in class org.catacomb.act.FieldSignature

setProcessWatcher(ProcessWatcher) - Method in interface org.catacomb.interlish.structure.RunProcess

setProgressReport(ProgressReport) - Method in class org.catacomb.serial.xml.XMLReader

setProjectionMatrix(double[][]) - Method in class org.catacomb.graph.gui.WorldTransform

setProperties(double, double, double, String) - Method in class org.catacomb.druid.gui.edit.DruFloat

setProperties(int, int, int, String, boolean) - Method in class org.catacomb.druid.gui.edit.DruInt

setProperties(double, double, double, String) - Method in class org.catacomb.druid.swing.DFloat

setProperties(int, int, int, String, boolean) - Method in class org.catacomb.druid.swing.DInt

setProtoNeighbors(SegmentGraphPoint, SegmentGraphPoint) - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

setProvider(AppPersistProvider) - Static method in class org.catacomb.interlish.service.AppPersist

setPublic() - Method in class org.catacomb.act.FieldSignature

setQualifier(String) - Method in class org.catacomb.act.Classdef

setQuality(int) - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Sets quality of color quantization (conversion of images to the maximum 256 colors allowed by the GIF specification).

setQuoteStrings(boolean) - Method in class org.catacomb.serial.xml.XMLWriter

setQuoteStrings(boolean) - Method in class org.textensor.xml.XMLWriter

setR(double) - Method in class org.catacomb.numeric.mesh.DifMeshPoint

setR(double) - Method in interface org.catacomb.numeric.mesh.MeshPoint

setRadius(double) - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

setRadius(double) - Method in class org.catacomb.numeric.difnet.model.BasicStructureNode

setRadius(double) - Method in interface org.catacomb.numeric.difnet.StructureNode

setRange(double, double) - Method in class org.catacomb.druid.swing.DFloatSlider

setRange(int, int) - Method in class org.catacomb.druid.swing.DInt

setRange(int) - Method in class org.catacomb.graph.gui.PickablePoint

setRange(double, double) - Method in class org.catacomb.interlish.content.ColorTable

setRangeMax(double) - Method in class org.catacomb.interlish.content.ColorTable

setRangeMin(double) - Method in class org.catacomb.interlish.content.ColorTable

setReactionData(int, int[][], int[][], double) - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

setReactionScheme(ReactionScheme) - Method in class org.textensor.stochdiff.model.SDRun

setRealizationContext(Context) - Method in class org.catacomb.druid.gui.base.DruKitPanel

setReferencePoint(Position) - Method in class org.catacomb.graph.gui.PickableRegion

setReferencePoint(double, double) - Method in class org.catacomb.graph.gui.PickableRegion

setReflectable() - Method in class org.catacomb.act.FieldSignature

setRegion(String) - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

setRegionListener(RegionListener) - Method in class org.catacomb.druid.swing.dnd.ClickableRegionStore

setRegionTag(String) - Method in class org.catacomb.graph.gui.PickableRegion

setRegionWith(MorphPoint, String) - Method in class org.textensor.stochdiff.model.MorphPoint

setRegionWith(TreePoint, String) - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

setRegression(double) - Method in class org.catacomb.numeric.function.AR1Noise

setRelStyleSheet(Object, String) - Method in class org.catacomb.druid.swing.DHTMLPane

setRepaintStatus(int) - Method in class org.catacomb.graph.gui.MouseHandler

setRepeat(int) - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Sets the number of times the set of GIF frames should be played.

setReplaceMode() - Method in class org.catacomb.druid.gui.base.DruInfoPanel

setReporter(Reporter) - Static method in class org.catacomb.report.E

setRequiredUserSource() - Method in class org.catacomb.act.MethodSignature

setResizeWeight(double) - Method in class org.catacomb.graph.gui.AboveBelowSplitPanel

setResizeWeight(double) - Method in class org.catacomb.graph.gui.LeftRightSplitPanel

setResolution(int) - Method in class org.textensor.vis.Icing3DViewer

setResolution(int) - Method in interface org.textensor.vis.Visualizer

setResource(String) - Method in class org.catacomb.interlish.resource.Role

setResourceLoader(ResourceLoader) - Static method in class org.catacomb.interlish.service.ResourceAccess

setResultWriter(ResultWriter) - Method in class org.textensor.stochdiff.numeric.BaseCalc

setReturnAction(String) - Method in class org.catacomb.druid.gui.edit.DruLabelledTextField

setReturnAction(String) - Method in class org.catacomb.druid.gui.edit.DruTextField

setReturnType(String) - Method in class org.catacomb.act.MethodSignature

setReturnType(String) - Method in class org.catacomb.act.MethodStub

setRollCenter(double, double, double) - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

setRollCenter(double, double, double) - Method in class org.catacomb.graph.gui.DrawingCanvas

setRollCenter(double, double, double) - Method in class org.catacomb.graph.gui.RollHandler

setRollCenter(double, double, double) - Method in class org.catacomb.graph.gui.WorldCanvas

setRollover(boolean) - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

setRolloverPolicy(int, int) - Method in class org.catacomb.druid.gui.edit.DruButton

setRolloverPolicy(int, int) - Method in class org.catacomb.druid.swing.DBaseButton

setRolloverPolicy(int, int) - Method in class org.catacomb.druid.swing.DButton

setRootDirectory(File) - Method in class org.catacomb.druid.swing.DFileChooser

setRootPolicy(int) - Method in class org.catacomb.druid.util.tree.RelationTree

setRootVisibility(boolean) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

setRotationListener(RotationListener) - Method in class org.catacomb.graph.gui.DrawingCanvas

setRotationListener(RotationListener) - Method in class org.catacomb.graph.gui.WorldCanvas

setRotationListener(RotationListener) - Method in class org.catacomb.graph.gui.WorldTransform

setRows(int) - Method in class org.catacomb.druid.swing.DTextArea

setRunTasks(RunProcess[]) - Method in interface org.catacomb.druid.util.TaskProgressDisplay

setRuntime(double) - Method in class org.catacomb.be.TimePoint

setScale(String) - Method in class org.catacomb.druid.swing.DFloat

setScale(int) - Method in class org.catacomb.druid.swing.DFloatSlider

setScale(String) - Method in class org.catacomb.druid.swing.DInt

setScale(double) - Method in class org.catacomb.graph.gui.WorldTransform

setScaleFactor(double) - Method in class org.textensor.vis.Icing3DViewer

setScaleFactor(double) - Method in interface org.textensor.vis.Visualizer

setSceneGraph(BranchGroup, ArrayList<Shape3D>) - Method in class org.textensor.vis.SceneGraphViewer

setScrollSize(int, int) - Method in class org.catacomb.druid.swing.DScrollPane

setSeed(int) - Static method in class org.catacomb.numeric.math.Random

setSeed(long) - Method in class org.textensor.stochdiff.numeric.math.MersenneTwister

setSeed(int) - Static method in class org.textensor.stochdiff.numeric.math.NRRandom

setSegment(Segment) - Method in class org.textensor.stochdiff.model.MorphPoint

setSegmentGraph(SegmentGraph) - Method in class org.catacomb.graph.arbor.SegmentGraphPainter

setSegmentGraph(SegmentGraph) - Method in class org.catacomb.graph.arbor.SegmentGraphVE

setSelectAction(String) - Method in class org.catacomb.graph.arbor.SegmentGraphVE

setSelectAction(int) - Method in class org.catacomb.graph.arbor.SegmentGraphVE

setSelectDirectories() - Method in class org.catacomb.druid.swing.DFileChooser

setSelected(String[]) - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

setSelected(int[]) - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

setSelected(String[]) - Method in class org.catacomb.druid.gui.edit.DruCheckboxTreePanel

setSelected(String) - Method in class org.catacomb.druid.gui.edit.DruChoice

setSelected(Object) - Method in class org.catacomb.druid.gui.edit.DruListPanel

setSelected(String) - Method in class org.catacomb.druid.gui.edit.DruRadioButtons

setSelected(String[]) - Method in class org.catacomb.druid.gui.edit.DruToggleListPanel

setSelected(int[]) - Method in class org.catacomb.druid.gui.edit.DruToggleListPanel

setSelected(String) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

setSelected(int[]) - Method in class org.catacomb.druid.swing.DCheckboxList

setSelected(String[]) - Method in class org.catacomb.druid.swing.DCheckboxList

setSelected(String[]) - Method in class org.catacomb.druid.swing.DCheckboxTree

setSelected(String) - Method in class org.catacomb.druid.swing.DChoice

setSelected(String) - Method in class org.catacomb.druid.swing.DRadioButtons

setSelected(Object[]) - Method in class org.catacomb.druid.swing.DTree

setSelected(boolean) - Method in class org.catacomb.druid.swing.TristateCheckBox

setSelected(boolean) - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

setSelected(Object) - Method in interface org.catacomb.interlish.structure.List

setSelected(String) - Method in interface org.catacomb.interlish.structure.TreeDisplay

setSelectedIndex(int) - Method in class org.catacomb.druid.swing.DRadioButtons

setSelectedItem(Object) - Method in class org.catacomb.druid.gui.edit.DruListPanel

setSelectedName(String) - Method in class org.catacomb.druid.swing.DButtonGroup

setSelectedType(XRelationType) - Method in class org.catacomb.druid.xtext.edit.XRelationTree

setSelectedType(XType) - Method in class org.catacomb.druid.xtext.edit.XTypeTree

setSelectFiles() - Method in class org.catacomb.druid.swing.DFileChooser

setSelectionActor(SelectionActor) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

setSelectionActor(SelectionActor) - Method in class org.catacomb.druid.swing.DCheckboxTree

setSelectionActor(SelectionActor) - Method in class org.catacomb.druid.swing.DTree

setSelectionActor(SelectionActor) - Method in interface org.catacomb.interlish.structure.TreeDisplay

setSelectionInterval(int, int) - Method in class org.catacomb.druid.swing.ToggleSelectionModel

setSelectionPaths(TreePath[]) - Method in class org.catacomb.druid.swing.CheckTreeSelectionModel

setSelectionSource(SelectionSource) - Method in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

setSelectionSource(SelectionSource) - Method in class org.catacomb.druid.gui.edit.DruMenuItem

setSelectionSource(SelectionSource) - Method in interface org.catacomb.interlish.structure.SelectionListener

setShelfColor(Color) - Method in class org.catacomb.druid.gui.base.DruAssemblyPanel

setShelfColor(Color) - Method in interface org.catacomb.interlish.interact.Workbench

setShowGrid(boolean) - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

setShowGrid(boolean) - Method in class org.catacomb.graph.gui.DrawingCanvas

setShowGrid(boolean) - Method in class org.catacomb.graph.gui.PickWorldCanvas

setShowing(boolean) - Method in class org.textensor.vis.SceneItem

setSideArea(double) - Method in class org.textensor.stochdiff.numeric.morph.CuboidVolumeElement

setSideArea(double) - Method in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

setSingle() - Method in class org.catacomb.druid.gui.base.DruPanel

setSingle() - Method in class org.catacomb.druid.swing.DPanel

setSize(int, int) - Method in class org.catacomb.druid.gui.base.DruDataDisplay

setSize(double, double) - Method in class org.catacomb.graph.drawing.Oval

setSize(double, double) - Method in class org.catacomb.graph.drawing.Rectangle

setSize(int) - Method in class org.catacomb.graph.gui.PickablePoint

setSize(double) - Method in interface org.catacomb.interlish.structure.Sizable

setSize(int, int) - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Sets the GIF frame size.

setSlider(DruSlider) - Method in class org.catacomb.dataview.FrameController

setSourceDassieText(String) - Method in class org.catacomb.xdoc.HTMLPage

setSourceFile(File) - Method in interface org.catacomb.be.FileSourcable

setSourceFile(File) - Method in class org.catacomb.interlish.content.DocumentedComponent

setSourceLocation(String) - Method in class org.catacomb.druid.build.Context

setSourceOffset(int, int) - Method in class org.catacomb.druid.swing.DDropCanvas

setSourceStyle(int) - Method in class org.catacomb.xdoc.HTMLPage

setSourceText(String) - Method in class org.catacomb.xdoc.HTMLPage

setSpeciesIDs(String[]) - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

setSpecifier(Specifier) - Method in interface org.catacomb.interlish.structure.Generic

setSplitPanelFollower(AboveBelowSplitPanel) - Method in class org.catacomb.graph.gui.AboveBelowSplitPanel

setStarted() - Method in class org.catacomb.druid.gui.edit.DruProgressReport

setStarted() - Method in class org.catacomb.interlish.report.PrintProgressReport

setStarted() - Method in interface org.catacomb.interlish.structure.ProgressReport

setState(boolean) - Method in class org.catacomb.druid.gui.edit.DruCheckbox

setState(boolean) - Method in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

setState(String, boolean) - Method in class org.catacomb.druid.swing.DPopLabel

setState(boolean) - Method in class org.catacomb.druid.swing.DRadioButton

setState(boolean) - Method in class org.catacomb.druid.swing.DToggleButton

setState(TristateCheckBox.State) - Method in class org.catacomb.druid.swing.TristateCheckBox

setState(TristateCheckBox.State) - Method in class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

setState(boolean) - Method in interface org.catacomb.interlish.structure.Toggle

setStateMethod - Static variable in class org.catacomb.druid.swing.DFrame

setStates(String[], boolean[]) - Method in class org.catacomb.druid.swing.DPopLabel

setStatusDisplay(StatusDisplay) - Method in class org.catacomb.interlish.report.Focus

setStatusDisplay(StatusDisplay) - Method in class org.catacomb.interlish.report.Status

setStatusDisplay(StatusDisplay) - Method in interface org.catacomb.interlish.structure.StatusSource

setStimulationSet(StimulationSet) - Method in class org.textensor.stochdiff.model.SDRun

setStimulus(Stimulus) - Method in class org.catacomb.numeric.difnet.model.BasicStateNode

setStimulus(Stimulus) - Method in interface org.catacomb.numeric.difnet.StateNode

setString(String, String) - Method in interface org.catacomb.interlish.structure.FlatDataStore

setStringValue(String, String) - Method in class org.catacomb.druid.build.DruidTargetStore

setStringValue(StringValue) - Method in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

setStringValue(String, StringValue) - Method in class org.catacomb.druid.gui.base.PanelPack

setStringValue(StringValue) - Method in class org.catacomb.druid.gui.edit.DruChoice

setStringValue(StringValue) - Method in class org.catacomb.druid.gui.edit.DruExpandingTextArea

setStringValue(StringValue) - Method in class org.catacomb.druid.gui.edit.DruHTMLPanel

setStringValue(StringValue) - Method in class org.catacomb.druid.gui.edit.DruLabelledTextField

setStringValue(StringValue) - Method in class org.catacomb.druid.gui.edit.DruRadioButtons

setStringValue(String) - Method in class org.catacomb.druid.gui.edit.DruRadioButtons

setStringValue(StringValue) - Method in class org.catacomb.druid.gui.edit.DruTextArea

setStringValue(StringValue) - Method in class org.catacomb.druid.gui.edit.DruTextField

setStringValue(String) - Method in interface org.catacomb.interlish.structure.HistoriablePrimitive

setStringValue(StringValue) - Method in interface org.catacomb.interlish.structure.StringValueEditor

setStringValue(String) - Method in interface org.catacomb.interlish.structure.StringValueSettable

setStringValue(String, String) - Method in interface org.catacomb.interlish.structure.TargetStore

setStringValue(String) - Method in class org.catacomb.serial.xml.XMLToken

setStringValue(XMLToken, String) - Method in class org.catacomb.serial.xml.XMLTokenizer

setStringValue(String) - Method in class org.textensor.xml.XMLToken

setStringValue(XMLToken, String) - Method in class org.textensor.xml.XMLTokenizer

setStroke(BasicStroke) - Method in class org.catacomb.graph.gui.Painter

setStyleHTML() - Method in class org.catacomb.druid.gui.base.DruLabelPanel

setStyleSheet(StyleSheet) - Method in class org.catacomb.druid.swing.DEditorPane

setStyleSheet(StyleSheet) - Method in class org.catacomb.druid.swing.DHTMLPane

setStylesheetPath(String) - Method in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

setStylesheetPath(String) - Method in class org.catacomb.druid.swing.DHTMLPane

setSubAreaOf(TreePoint) - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

setSubclassName(String) - Method in class org.catacomb.act.Classdef

setSubelements(String, String[]) - Method in class org.catacomb.serial.quickxml.Element

setSubject(Object) - Method in interface org.catacomb.graph.gui.BuildPaintMaster

setSubmembrane() - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

setSubslice(DataSlice) - Method in class org.catacomb.numeric.data.DataSlice

setSunkenBorder(Color) - Method in class org.catacomb.druid.gui.base.DruPanel

setSunkenBorder(Color) - Method in class org.catacomb.druid.swing.DPanel

setSunkenBorder(Color) - Method in interface org.catacomb.interlish.interact.Workbench

setSupercessor(Object) - Method in interface org.catacomb.interlish.structure.Supercedable

setSuperclassName(String) - Method in class org.catacomb.act.Classdef

setSuperDefined() - Method in class org.catacomb.act.MethodSignature

setSuperSource() - Method in class org.catacomb.act.MethodSignature

setSurfaceBoundary(Position[]) - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

setSurfaceCapacitance(double) - Method in class org.catacomb.numeric.difnet.model.BasicNetStructure

setSurfaceConductance(double) - Method in class org.catacomb.numeric.difnet.model.BasicNetStructure

setSymmetry(int) - Method in class org.catacomb.graph.drawing.Shape

setSymmetryString(String) - Method in class org.catacomb.graph.drawing.Shape

setSystemLog(Log) - Static method in class org.catacomb.druid.guimodel.Log

setSystemSource() - Method in class org.catacomb.act.FunctionSignature

setSystemSource() - Method in class org.catacomb.act.MethodSignature

SettableStructure - Interface in org.catacomb.interlish.structure

setTag(String) - Method in class org.catacomb.interlish.content.DocumentedComponent

setTag(String) - Method in interface org.catacomb.interlish.structure.Taggable

setTarget(String[]) - Method in class org.catacomb.druid.swing.DPlainTextEditor

setTarget(Object) - Method in class org.catacomb.druid.xtext.edit.GuiseController

setTarget(Object) - Method in interface org.catacomb.interlish.structure.TableEditor

setTarget(Object) - Method in interface org.catacomb.interlish.structure.Targetable

setTargetIndex(int) - Method in class org.catacomb.numeric.difnet.model.PointStim

setTargetStore(TargetStore) - Method in class org.catacomb.druid.gui.edit.DruMenuButton

setTargetStore(TargetStore) - Method in class org.catacomb.druid.gui.edit.Effect

setTargetStore(TargetStore) - Method in interface org.catacomb.interlish.structure.TargetStoreUser

SETTER - Static variable in interface org.catacomb.act.BlockSignature

setter - Variable in class org.catacomb.act.FieldSignature

setText(String) - Method in class org.catacomb.druid.gui.base.DruInfoPanel

setText(String) - Method in class org.catacomb.druid.gui.base.DruLabel

setText(String) - Method in class org.catacomb.druid.gui.base.DruLabelPanel

setText(String) - Method in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

setText(String, String) - Method in class org.catacomb.druid.gui.base.PanelPack

setText(String) - Method in class org.catacomb.druid.gui.edit.DruDropBox

setText(String) - Method in class org.catacomb.druid.gui.edit.DruHTMLPanel

setText(String) - Method in class org.catacomb.druid.gui.edit.DruProgressReport

setText(String) - Method in class org.catacomb.druid.swing.DDropCanvas

setText(String) - Method in class org.catacomb.druid.swing.DPlainTextEditor

setText(String) - Method in class org.catacomb.druid.swing.DPopLabel

setText(String) - Method in class org.catacomb.druid.swing.DTextArea

setText(String) - Method in class org.catacomb.druid.swing.DTextField

setText(String) - Method in class org.catacomb.druid.xtext.base.TextBlock

setText(String) - Method in class org.catacomb.interlish.report.PrintProgressReport

setText(String) - Method in interface org.catacomb.interlish.structure.ProgressReport

setText(String) - Method in interface org.catacomb.interlish.structure.TextSettable

setTextActor(TextActor) - Method in class org.catacomb.druid.swing.DTextArea

setTextActor(TextActor) - Method in class org.catacomb.druid.swing.DTextField

setTextBg(int) - Method in class org.catacomb.druid.gui.edit.DruExpandingTextArea

setTextPainter(TextPainter) - Method in class org.catacomb.druid.swing.DTextCanvas

setThreeD() - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

setThreeD() - Method in class org.catacomb.graph.gui.DrawingCanvas

setTime(double) - Method in class org.catacomb.datalish.SceneConfig

setTime(double) - Method in class org.catacomb.numeric.data.NumDataStore

setTime(double) - Method in class org.catacomb.numeric.difnet.model.BasicNetState

setTime(double) - Method in interface org.catacomb.numeric.difnet.NetState

settings - Variable in class org.catacomb.druid.load.DruidAppBase

Settings - Class in org.catacomb.druid.load

Settings(String) - Constructor for class org.catacomb.druid.load.Settings

setTip(String) - Method in class org.catacomb.druid.gui.base.DruPanel

setTitle(String) - Method in class org.catacomb.druid.gui.base.DruFrame

setTitle(String) - Method in class org.catacomb.druid.gui.base.DruPanel

setTitle(String) - Method in class org.catacomb.druid.swing.DDialog

setTitle(String) - Method in class org.catacomb.druid.swing.DFrame

setTitleInfo(String, String) - Method in class org.catacomb.druid.gui.base.DruPanel

setToggle(String, String) - Method in class org.catacomb.druid.gui.edit.DruToggleButton

setToggleAction(String) - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

setToggleAction() - Method in class org.catacomb.druid.gui.edit.DruScrollingCheckboxListPanel

setToggleAction() - Method in class org.catacomb.druid.gui.edit.DruScrollingListPanel

setToggleAction() - Method in class org.catacomb.druid.swing.DCheckboxList

setToggleAction() - Method in class org.catacomb.druid.swing.DList

setTooltip(String) - Method in class org.catacomb.druid.gui.edit.DruChoice

setTooltip(String) - Method in class org.catacomb.druid.gui.edit.DruSimpleSlider

setTooltip(String) - Method in class org.catacomb.druid.swing.DBoxPanel

setTooltip(String) - Method in class org.catacomb.druid.swing.DButton

setTooltip(String) - Method in class org.catacomb.druid.swing.DCheckbox

setTooltip(String) - Method in class org.catacomb.druid.swing.DCheckboxList

setTooltip(String) - Method in class org.catacomb.druid.swing.DChoice

setTooltip(String) - Method in class org.catacomb.druid.swing.DDotsPanel

setTooltip(String) - Method in class org.catacomb.druid.swing.DFillGuage

setTooltip(String) - Method in class org.catacomb.druid.swing.DFloat

setTooltip(String) - Method in class org.catacomb.druid.swing.DFormPanel

setTooltip(String) - Method in class org.catacomb.druid.swing.DHRPanel

setTooltip(String) - Method in class org.catacomb.druid.swing.DHTMLPane

setTooltip(String) - Method in class org.catacomb.druid.swing.DInt

setTooltip(String) - Method in class org.catacomb.druid.swing.DLabel

setToolTip(String) - Method in class org.catacomb.druid.swing.DLabel

setTooltip(String) - Method in class org.catacomb.druid.swing.DList

setTooltip(String) - Method in class org.catacomb.druid.swing.DPanel

setTooltip(String) - Method in class org.catacomb.druid.swing.DProgressReport

setTooltip(String) - Method in class org.catacomb.druid.swing.DRadioButtons

setTooltip(String) - Method in class org.catacomb.druid.swing.DScrollPane

setTooltip(String) - Method in class org.catacomb.druid.swing.DSimpleSlider

setTooltip(String) - Method in class org.catacomb.druid.swing.DSlider

setTooltip(String) - Method in class org.catacomb.druid.swing.DSplitPane

setTooltip(String) - Method in class org.catacomb.druid.swing.DTabbedPane

setTooltip(String) - Method in class org.catacomb.druid.swing.DTextCanvas

setTooltip(String) - Method in class org.catacomb.druid.swing.DToggleButton

setTooltip(String) - Method in class org.catacomb.druid.swing.DValueHistory

setTooltip(String) - Method in class org.catacomb.druid.swing.split.DSplitterBar

setTooltip(String) - Method in class org.catacomb.graph.gui.BasePanel

setTooltip(String) - Method in interface org.catacomb.interlish.interact.DComponent

setTooltips(String[]) - Method in class org.catacomb.druid.swing.DList

setTooltipTarget(DComponent) - Method in class org.catacomb.druid.gui.base.DruPanel

setTopArea(double) - Method in class org.textensor.stochdiff.numeric.morph.CuboidVolumeElement

setTopArea(double) - Method in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

setTransform(Transform3D) - Method in class org.textensor.vis.SceneGraphViewer

setTransparent(Color) - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Sets the transparent color for the last added frame and any subsequent frames.

setTree(Tree) - Method in class org.catacomb.druid.build.TreeController

setTree(Tree) - Method in class org.catacomb.druid.gui.edit.DruCheckboxTreePanel

setTree(Tree) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

setTree(Tree) - Method in class org.catacomb.druid.swing.DCheckboxTree

setTree(Tree) - Method in class org.catacomb.druid.swing.DTree

setTree(Tree) - Method in interface org.catacomb.interlish.structure.TreeDisplay

setTreeChangeReporter(TreeChangeReporter) - Method in class org.catacomb.druid.gui.base.DummyTree

setTreeChangeReporter(TreeChangeReporter) - Method in class org.catacomb.druid.swing.EmptyTree

setTreeChangeReporter(TreeChangeReporter) - Method in class org.catacomb.druid.util.tree.RelationTree

setTreeChangeReporter(TreeChangeReporter) - Method in class org.catacomb.druid.xtext.base.DocStore

setTreeChangeReporter(TreeChangeReporter) - Method in interface org.catacomb.interlish.structure.Tree

setTreeChangeReporter(TreeChangeReporter) - Method in class org.catacomb.numeric.data.BlockStack

setTreeChangeReporter(TreeChangeReporter) - Method in class org.catacomb.numeric.data.NumDataStore

setTreeChangeReporter(TreeChangeReporter) - Method in class org.catacomb.util.StringTree

setTreeExplorer(TreeExplorer) - Method in class org.catacomb.druid.xtext.base.DocStore

setTreeExplorer(TreeExplorer) - Method in interface org.catacomb.interlish.structure.TreeProvider

setTreeProvider(TreeProvider) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

setTreeProvider(TreeProvider) - Method in interface org.catacomb.interlish.structure.TreeExplorer

setTriangles(int[], float[][], float[][]) - Method in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

setType(String) - Method in class org.catacomb.act.ArrayDeclaration

setType(int) - Method in class org.catacomb.act.MethodSignature

setType(int) - Method in class org.catacomb.druid.swing.DPopLabel

setType(XType) - Method in class org.catacomb.druid.xtext.base.TextBlock

setType(String) - Method in class org.catacomb.graph.drawing.ShapePoint

setType(int) - Method in class org.catacomb.serial.xml.XMLToken

setType(int) - Method in class org.textensor.xml.XMLToken

setTypeArchive(TypeArchive) - Method in class org.catacomb.serial.state.ModelState

setTypeInstantiator(Instantiator) - Method in class org.catacomb.interlish.service.ScriptManager

setUnderline(boolean) - Method in class org.catacomb.druid.xtext.base.Guise

setUpBlock(UpBlock) - Method in class org.catacomb.druid.xtext.base.ContainerBlock

setUpdatable(Updatable) - Method in class org.catacomb.druid.gui.edit.DruChoice

setUpdatable(Updatable) - Method in class org.catacomb.druid.swing.DChoice

setupOutput() - Method in class org.catacomb.util.DiffPrint.Base

setUserHidden(String) - Method in class org.catacomb.act.Classdef

setUserHidden() - Method in class org.catacomb.act.MethodSignature

setUserSource() - Method in class org.catacomb.act.FunctionSignature

setUserSource() - Method in class org.catacomb.act.MethodSignature

setValue(String) - Method in class org.catacomb.druid.gui.edit.DruRadioButtons

setValue(String, String) - Method in class org.catacomb.druid.load.DruidAppBase

setValue(double) - Method in class org.catacomb.druid.swing.DFloat

setValue(double, Object) - Method in class org.catacomb.druid.swing.DFloat

setValue(double) - Method in class org.catacomb.druid.swing.DFloatSlider

setValue(int) - Method in class org.catacomb.druid.swing.DInt

setValue(int, Object) - Method in class org.catacomb.druid.swing.DInt

setValue(double) - Method in class org.catacomb.interlish.content.DoubleValue

setValue(double) - Method in class org.catacomb.interlish.content.NVPair

setValue(double, String) - Method in class org.catacomb.interlish.content.NVPair

setValue(String, String) - Static method in class org.catacomb.interlish.service.AppPersist

setValue(String, String) - Method in interface org.catacomb.interlish.service.AppPersistProvider

setValue(DiffusibleQuantity, double) - Method in class org.catacomb.numeric.difnet.model.BasicStateNode

setValue(DiffusibleQuantity, double) - Method in interface org.catacomb.numeric.difnet.StateNode

setValue(String) - Method in class org.catacomb.serial.om.OmAttribute

setValue(String) - Method in class org.catacomb.serial.quickxml.Element

setValue(double) - Method in interface org.textensor.stochdiff.inter.FloatValued

setValue(double) - Method in class org.textensor.stochdiff.model.NanoMolarity

setValue(double) - Method in class org.textensor.stochdiff.model.NumberDensity

setValue(double) - Method in class org.textensor.stochdiff.model.PicoSD

setValue(String) - Method in class org.textensor.stochdiff.neuroml.MetaItem

setValues(String[]) - Method in class org.catacomb.druid.gui.edit.DruSlider

setValues(String[]) - Method in class org.catacomb.druid.swing.DSlider

setVectorIcon(VectorIcon) - Method in interface org.catacomb.graph.drawing.VectorIconable

setVerticalScrollbarAlways() - Method in class org.catacomb.druid.gui.base.DruScrollPanel

setVerticalScrollBarAlways() - Method in class org.catacomb.druid.swing.DScrollPane

setVerticalScrollbarAlways() - Method in class org.catacomb.druid.swing.DScrollPane

setVerticalScrollbarAsNeeded() - Method in class org.catacomb.druid.gui.base.DruScrollPanel

setVerticalScrollbarAsNeeded() - Method in class org.catacomb.druid.swing.DScrollPane

setVerticalScrollbarNever() - Method in class org.catacomb.druid.gui.base.DruScrollPanel

setVerticalScrollbarNever() - Method in class org.catacomb.druid.swing.DScrollPane

setViewDComponent(DComponent) - Method in class org.catacomb.druid.swing.DScrollPane

setViewee(Object) - Method in interface org.catacomb.interlish.structure.ObjectViewer

setViewSize(int, int) - Method in class org.catacomb.dataview.gui.DViewPlotController

setViewStyle(String) - Method in interface org.catacomb.dataview.formats.DataHandler

setViewStyle(String) - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

setViewStyle(String) - Method in class org.catacomb.dataview.formats.MeshSummary

setViewStyle(String) - Method in class org.catacomb.dataview.formats.PolyLineHandler

setViewStyle(String) - Method in class org.catacomb.dataview.formats.SWCDisplay

setViewStyle(String) - Method in class org.catacomb.dataview.formats.TableDataHandler

setViewStyle(String) - Method in class org.catacomb.dataview.gui.CCVizController

setViewStyle(String) - Method in class org.catacomb.dataview.gui.DViewController

setVisibility(String) - Method in class org.catacomb.act.MethodStub

setVisible() - Method in class org.catacomb.act.FieldSignature

setVisible(boolean) - Method in class org.catacomb.druid.gui.base.DruDialog

setVisible(boolean) - Method in class org.catacomb.druid.gui.base.DruFrame

setVolume(double) - Method in class org.textensor.stochdiff.numeric.morph.VolumeElement

setWidth(int) - Method in class org.catacomb.druid.xtext.base.TextFloat

setWidth(double) - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

setWidth(int) - Method in class org.catacomb.graph.gui.WorldTransform

setWork(int) - Method in class org.catacomb.numeric.difnet.CellPoint

setWork(int) - Method in class org.catacomb.numeric.difnet.model.BasicStructureNode

setWork(int) - Method in interface org.catacomb.numeric.difnet.StructureNode

Stores an integer for later retrieval.

setWork(int) - Method in class org.catacomb.numeric.mesh.DifMeshPoint

setWork(int) - Method in interface org.catacomb.numeric.mesh.MeshPoint

setWork(int) - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

setWorkbench(Workbench) - Method in class org.catacomb.druid.gui.base.DruAssemblyPanel

setWorldTransform(WorldTransform) - Method in class org.catacomb.graph.gui.Painter

setX(double) - Method in class org.catacomb.be.Position

setX(double) - Method in class org.catacomb.numeric.mesh.DifMeshPoint

setX(double) - Method in interface org.catacomb.numeric.mesh.MeshPoint

setXAxis(XAxis) - Method in class org.catacomb.dataview.formats.PolyLineHandler

setXAxis(String, double, double) - Method in class org.catacomb.druid.gui.base.DruDataDisplay

setXAxis(String, double, double) - Method in class org.catacomb.graph.gui.DataDisplay

setXAxisLabel(String) - Method in class org.catacomb.dataview.GraphMaker

setXAxisLabel(String) - Method in class org.catacomb.druid.gui.base.DruDataDisplay

setXAxisLabel(String) - Method in class org.catacomb.graph.gui.DataDisplay

setXAxisLabel(String) - Method in class org.catacomb.graph.gui.GridPainter

setXAxisLabel(String) - Method in class org.catacomb.graph.gui.PickWorldCanvas

setXLabel(String) - Method in class org.catacomb.dataview.Plot

setXMax(double) - Method in class org.catacomb.datalish.Box

setXMin(double) - Method in class org.catacomb.datalish.Box

setXMLContent(String) - Method in interface org.textensor.stochdiff.inter.XMLContainer

setXMLContent(String) - Method in class org.textensor.stochdiff.neuroml.meta

setXMLContent(String) - Method in class org.textensor.stochdiff.neuroml.MorphMLProperties

setXpts(double[]) - Method in class org.catacomb.interlish.content.Polypoint

setXRange(double, double) - Method in class org.catacomb.dataview.GraphMaker

setXRange(double, double) - Method in class org.catacomb.dataview.Plot

setXRange(double, double) - Method in class org.catacomb.druid.gui.base.DruDataDisplay

setXRange(double, double) - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

setXRange(double, double) - Method in class org.catacomb.druid.gui.base.DruMovieDisplay

setXRange(double, double) - Method in class org.catacomb.graph.gui.DataDisplay

setXRange(double[]) - Method in class org.catacomb.graph.gui.DataView

setXRange(double, double) - Method in class org.catacomb.graph.gui.DataView

setXRange(double, double) - Method in class org.catacomb.graph.gui.DrawingCanvas

setXRange(double, double) - Method in class org.catacomb.graph.gui.MovieDisplay

setXRange(double[]) - Method in class org.catacomb.graph.gui.WorldCanvas

setXRange(double, double) - Method in class org.catacomb.graph.gui.WorldCanvas

setXRange(double, double) - Method in class org.catacomb.graph.gui.WorldTransform

setXRange(double, double) - Method in interface org.catacomb.interlish.structure.GraphicsView

setXRescalable(boolean) - Method in class org.catacomb.graph.gui.WorldTransform

setXYLocation(XYLocation) - Method in interface org.catacomb.interlish.structure.Plug

setXYLocation(XYLocation) - Method in interface org.catacomb.interlish.structure.XYLocatable

setXYXYLimits(double, double, double, double) - Method in class org.catacomb.graph.gui.WorldTransform

setY(double) - Method in class org.catacomb.be.Position

setY(double) - Method in class org.catacomb.numeric.mesh.DifMeshPoint

setY(double) - Method in interface org.catacomb.numeric.mesh.MeshPoint

setYAxis(YAxis) - Method in class org.catacomb.dataview.formats.PolyLineHandler

setYAxis(String, double, double) - Method in class org.catacomb.druid.gui.base.DruDataDisplay

setYAxis(String, double, double) - Method in class org.catacomb.graph.gui.DataDisplay

setYAxisLabel(String) - Method in class org.catacomb.dataview.GraphMaker

setYAxisLabel(String) - Method in class org.catacomb.druid.gui.base.DruDataDisplay

setYAxisLabel(String) - Method in class org.catacomb.graph.gui.DataDisplay

setYLabel(String) - Method in class org.catacomb.dataview.Plot

setYMax(double) - Method in class org.catacomb.datalish.Box

setYMin(double) - Method in class org.catacomb.datalish.Box

setYpts(double[]) - Method in class org.catacomb.interlish.content.Polypoint

setYRange(double, double) - Method in class org.catacomb.dataview.GraphMaker

setYRange(double, double) - Method in class org.catacomb.dataview.Plot

setYRange(double, double) - Method in class org.catacomb.druid.gui.base.DruDataDisplay

setYRange(double, double) - Method in class org.catacomb.graph.gui.DataDisplay

setYRange(double[]) - Method in class org.catacomb.graph.gui.DataView

setYRange(double, double) - Method in class org.catacomb.graph.gui.DataView

setYRange(double[]) - Method in class org.catacomb.graph.gui.WorldCanvas

setYRange(double, double) - Method in class org.catacomb.graph.gui.WorldCanvas

setYRange(double, double) - Method in class org.catacomb.graph.gui.WorldTransform

setYRescalable(boolean) - Method in class org.catacomb.graph.gui.WorldTransform

setZ(double) - Method in class org.catacomb.numeric.mesh.DifMeshPoint

setZ(double) - Method in interface org.catacomb.numeric.mesh.MeshPoint

setZoomIn(boolean) - Method in class org.catacomb.druid.chunk.MouseModeController

setZoomOut(boolean) - Method in class org.catacomb.druid.chunk.MouseModeController

setZValue(double) - Method in interface org.catacomb.dataview.formats.DataHandler

setZValue(double) - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

setZValue(double) - Method in class org.catacomb.dataview.formats.MeshSummary

setZValue(double) - Method in class org.catacomb.dataview.formats.PolyLineHandler

setZValue(double) - Method in class org.catacomb.dataview.formats.SWCDisplay

setZValue(double) - Method in class org.catacomb.dataview.formats.TableDataHandler

severity - Variable in class org.catacomb.druid.guimodel.LogEntry

sfull - Variable in class org.catacomb.util.WSString

sfunc - Variable in class org.catacomb.numeric.difnet.model.PointVoltageStim

sfuncC - Variable in class org.catacomb.numeric.difnet.model.PointCurrentStim

SGAttachmentPoint - Class in org.catacomb.graph.arbor

SGAttachmentPoint() - Constructor for class org.catacomb.graph.arbor.SGAttachmentPoint

sgp1 - Variable in class org.catacomb.graph.arbor.SegmentGraphPainter

sgp1 - Variable in class org.catacomb.graph.arbor.SegmentGraphVE

sgp2 - Variable in class org.catacomb.graph.arbor.SegmentGraphPainter

sgp2 - Variable in class org.catacomb.graph.arbor.SegmentGraphVE

Shape - Class in org.catacomb.graph.drawing

Shape() - Constructor for class org.catacomb.graph.drawing.Shape

Shape(Shape) - Constructor for class org.catacomb.graph.drawing.Shape

ShapePoint - Class in org.catacomb.graph.drawing

ShapePoint(Shape, Position, int) - Constructor for class org.catacomb.graph.drawing.ShapePoint

shapes - Variable in class org.textensor.vis.SceneGraphBuilder

shapes - Variable in class org.textensor.vis.SceneGraphViewer

ShapeSymmetry - Class in org.catacomb.graph.drawing

ShapeSymmetry() - Constructor for class org.catacomb.graph.drawing.ShapeSymmetry

SHARED_DIFF_PARTICLES - Static variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

SHARED_DIFF_PARTICLES - Static variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

sharedDiffusionStep(int, int) - Method in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

sharedDiffusionStep(int, int) - Method in class org.textensor.stochdiff.numeric.tmp.Tmp1A

shelfColor - Variable in class org.catacomb.druid.blocks.AssemblyPanel

shelfColor - Variable in class org.catacomb.druid.gui.base.DruAssemblyPanel

shift(double, double) - Method in class org.catacomb.be.Position

shift(Position) - Method in class org.catacomb.be.Position

shift(double, double) - Method in class org.catacomb.graph.drawing.SegmentLine

shift(int, int) - Method in class org.catacomb.interlish.content.IntPosition

shift_boundaries(Diff.file_data) - Method in class org.catacomb.util.Diff.file_data

Adjust inserts/deletes of blank lines to join changes as much as possible.

shift_boundaries() - Method in class org.catacomb.util.Diff

Adjust inserts/deletes of blank lines to join changes as much as possible.

SHIFT_SHAPE - Static variable in class org.catacomb.graph.drawing.Shape

shiftExpand(double, double, double) - Method in class org.catacomb.graph.drawing.Shape

shiftFromCache(Position) - Method in class org.catacomb.graph.drawing.ShapePoint

shortClassName(Object) - Static method in class org.catacomb.interlish.util.JUtil

shortError(String) - Static method in class org.catacomb.report.E

shortError(String) - Static method in class org.textensor.report.E

shortHM - Variable in class org.catacomb.druid.build.DruidTargetStore

shortID - Variable in class org.catacomb.interlish.content.DocumentedComponent

shortMissing(String) - Static method in class org.catacomb.report.E

shortMissingOnce(String) - Static method in class org.catacomb.report.E

shortName(String) - Static method in class org.catacomb.util.PathUtil

shortToFullHM - Variable in class org.catacomb.interlish.content.KeyedList

shortToFullID - Variable in class org.catacomb.druid.load.XMLStore

shortToFullMulti - Variable in class org.catacomb.druid.load.XMLStore

shortWarning(String) - Static method in class org.catacomb.report.E

shortWarning(String) - Static method in class org.textensor.report.E

shouldStop - Variable in class org.catacomb.dataview.gui.FramePlayer

shouldStop - Variable in class org.catacomb.graph.gui.MovieFramePlayer

shouldWritePackage(String) - Method in class org.catacomb.serial.SerializationContext

SHOW - Static variable in interface org.catacomb.act.BlockSignature

show() - Method in class org.catacomb.dataview.build.Dataview

show(Object) - Method in class org.catacomb.dataview.FrameController

show(Object) - Method in class org.catacomb.dataview.gui.FramePlayerController

show - Variable in class org.catacomb.druid.blocks.BrowserPanel

show - Variable in class org.catacomb.druid.blocks.CardSelectionEffect

show - Variable in class org.catacomb.druid.blocks.HTMLPanel

show - Variable in class org.catacomb.druid.blocks.MenuButton

show - Variable in class org.catacomb.druid.blocks.ScrollableTextPanel

show - Variable in class org.catacomb.druid.blocks.ScrollingHTMLPanel

show - Variable in class org.catacomb.druid.blocks.TextPanel

show - Variable in class org.catacomb.druid.blocks.TreePanel

show() - Method in class org.catacomb.druid.build.Druid

show(Object) - Method in class org.catacomb.druid.build.Druid

show(Object) - Method in class org.catacomb.druid.build.ReceivingController

show(Object) - Method in class org.catacomb.druid.dialog.CheckSeenDialogController

show(Object) - Method in class org.catacomb.druid.dialog.DialogController

show() - Method in class org.catacomb.druid.dialog.DialogController

show(int[], String, String) - Method in class org.catacomb.druid.dialog.MessageDialogController

show() - Method in class org.catacomb.druid.dialog.ProgressLogDialogController

show(int[]) - Method in class org.catacomb.druid.dialog.ProgressLogDialogController

show(int[], StringValue) - Method in class org.catacomb.druid.dialog.TextDialogController

show() - Method in class org.catacomb.druid.gui.base.DruAutonomousDialog

show() - Method in class org.catacomb.druid.gui.base.DruEditorWindow

show(Object) - Method in class org.catacomb.druid.util.ctrl.WindowCloser

show(Object) - Method in class org.catacomb.graph.drawing.IconEditorController

show() - Method in class org.catacomb.icon.splash.Splash

show(String) - Static method in class org.catacomb.interlish.report.Focus

show(String) - Static method in class org.catacomb.interlish.report.Status

show() - Method in interface org.catacomb.interlish.structure.FrameShowable

show(Object) - Method in interface org.catacomb.interlish.structure.Portal

show() - Method in class org.textensor.vis.CCViz3D

show() - Method in class org.textensor.vis.Icing3DViewer

SHOW_MENU - Static variable in class org.catacomb.druid.swing.DPopLabel

SHOW_ROOT - Static variable in interface org.catacomb.interlish.structure.Tree

showAll() - Method in class org.textensor.vis.SceneGraphViewer

showAt(int, int) - Method in class org.catacomb.druid.dialog.CheckSeenDialogController

showAt(int, int) - Method in class org.catacomb.druid.dialog.DialogController

showAt(Position) - Method in class org.catacomb.graph.gui.GraphContextMenu

showAt(Position) - Method in interface org.catacomb.interlish.structure.ContextMenu

showBottom() - Method in class org.catacomb.druid.gui.base.DruBrowserPanel

showCard(String) - Method in class org.catacomb.druid.gui.base.DruCardPanel

showCard(String) - Method in class org.catacomb.druid.gui.base.DruPseudoCardPanel

showCard(String) - Method in class org.catacomb.druid.swing.DCardPanel

showCard(String) - Method in class org.catacomb.druid.swing.DInfoArea

showCard(String) - Method in class org.catacomb.druid.swing.DScrollablePanel

showCard(String) - Method in class org.catacomb.druid.swing.DToolablePanel

showContent() - Method in class org.catacomb.druid.swing.DPlainTextEditor

showDoc(XTDoc) - Method in interface org.catacomb.druid.xtext.base.DocDisplay

showFit(double[], double[]) - Method in class org.textensor.stochdiff.reduce.Reducer

showFraction(double) - Method in class org.textensor.vis.SceneGraphViewer

showFrame(int) - Method in class org.catacomb.dataview.DataPlotPainter

showFrame(int) - Method in class org.catacomb.dataview.DataviewController

showFrame(int) - Method in class org.catacomb.dataview.FrameController

showFrame(int) - Method in class org.catacomb.dataview.gui.FramePlayerController

showFrame(int) - Method in class org.catacomb.dataview.gui.Mesh2plusTimeController

showFrame(int) - Method in class org.catacomb.graph.gui.MovieDisplay

showFrame(int) - Method in interface org.catacomb.interlish.structure.FrameDisplay

showFrame(int) - Method in interface org.catacomb.interlish.structure.MovieOperator

showHTML(String) - Method in class org.catacomb.druid.gui.edit.DruHTMLPanel

showHTML(String) - Method in class org.catacomb.druid.gui.edit.DruLogPanel

showHTML(String) - Method in class org.catacomb.druid.swing.DEditorPane

showHTML(String) - Method in class org.catacomb.druid.swing.DHTMLPane

showHTMLContent(String) - Method in class org.catacomb.druid.gui.base.DruInfoPanel

showIfNotYetSeen(String, String, int[]) - Method in class org.catacomb.druid.dialog.CheckSeenDialogController

showImage(String) - Method in class org.catacomb.druid.gui.base.DruImageLabelPanel

showInfo(String) - Method in class org.catacomb.druid.gui.base.DruInfoPanel

showInfo(String, String) - Method in class org.catacomb.druid.gui.base.DruInfoPanel

showInfo(String) - Method in interface org.catacomb.druid.gui.base.InfoDisplay

showing - Variable in class org.textensor.vis.SceneItem

showIthCard(int) - Method in class org.catacomb.druid.gui.base.DruPseudoCardPanel

showLabel(String) - Method in class org.catacomb.graph.arbor.SegmentGraph

showMenu() - Method in class org.catacomb.druid.swing.DChoice

showMenu() - Method in class org.catacomb.druid.swing.DPopLabel

showMenu() - Method in class org.catacomb.druid.swing.DValueHistory

showModalAt(int, int) - Method in class org.catacomb.druid.dialog.DialogController

showNewItem(Object[]) - Method in class org.catacomb.druid.build.TreeController

showNewItem(Object[]) - Method in class org.catacomb.druid.gui.edit.DruCheckboxTreePanel

showNewItem(Object[]) - Method in class org.catacomb.druid.gui.edit.DruTreePanel

showNewItem(Object[]) - Method in interface org.catacomb.interlish.structure.TreeDisplay

shownFrame - Variable in class org.catacomb.dataview.FrameController

shownFrame - Variable in class org.catacomb.dataview.gui.FramePlayerController

shownFrame - Variable in class org.catacomb.graph.gui.MovieDisplay

showNonModal(int[], StringValue) - Method in class org.catacomb.druid.dialog.TextDialogController

showNonModalAt(int, int) - Method in class org.catacomb.druid.dialog.DialogController

showPage(Page) - Method in class org.catacomb.druid.gui.base.DruBrowserPanel

showPage(Page) - Method in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

showPage(Page) - Method in class org.catacomb.druid.gui.edit.DruHTMLPanel

showPage(Page) - Method in class org.catacomb.druid.swing.DHTMLPane

showPage(Page) - Method in interface org.catacomb.interlish.structure.PageDisplay

showPanel(String, Object) - Method in class org.catacomb.druid.gui.base.DruKitPanel

showPlot(String) - Method in class org.catacomb.dataview.gui.DViewPlotController

showPopup(DruMenuButton, int, int) - Method in class org.catacomb.druid.gui.edit.DruMenu

showPopup(JComponent, int, int) - Method in class org.catacomb.druid.swing.DMenu

showRoot - Variable in class org.catacomb.druid.blocks.TreePanel

showShape(Shape3D) - Method in class org.textensor.vis.SceneGraphViewer

showShortSource() - Static method in class org.catacomb.report.E

showShortSource() - Static method in class org.textensor.report.E

showSource() - Static method in class org.catacomb.report.E

showSource(int) - Static method in class org.catacomb.report.E

showSource() - Static method in class org.textensor.report.E

showSource(int) - Static method in class org.textensor.report.E

showSplash(String) - Static method in class org.catacomb.icon.splash.Splasher

showState() - Method in class org.catacomb.graph.gui.IconRadioButton

showStatus(String) - Method in class org.catacomb.druid.gui.base.DruStatusBar

showStatus(String) - Method in interface org.catacomb.interlish.structure.StatusDisplay

showTab(String) - Method in class org.catacomb.druid.gui.base.DruTabbedPanel

showTab(String) - Method in class org.catacomb.druid.swing.DTabbedPane

showText(String) - Static method in class org.catacomb.druid.dialog.Dialoguer

showText(int[], StringValue) - Static method in class org.catacomb.druid.dialog.Dialoguer

showText(String) - Method in class org.catacomb.druid.gui.base.DruInfoPanel

showText(String) - Method in class org.catacomb.druid.gui.edit.DruLogPanel

showThreads() - Static method in class org.catacomb.dataview.Plotter

showTooltips() - Method in class org.catacomb.graph.gui.WorldCanvas

showValue(double, String) - Method in class org.catacomb.druid.gui.edit.DruFillGuage

showValue(int) - Method in class org.catacomb.druid.gui.edit.DruSlider

showValue(double, String) - Method in class org.catacomb.druid.swing.DFillGuage

showValue() - Method in class org.catacomb.druid.swing.DFloat

showValue() - Method in class org.catacomb.druid.swing.DInt

showValue(int) - Method in class org.catacomb.druid.swing.DSlider

siblings - Variable in class org.textensor.stochdiff.ResultWriter

sideArea - Variable in class org.textensor.stochdiff.numeric.morph.CuboidVolumeElement

sideArea - Variable in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

sign - Variable in class org.catacomb.numeric.math.Matrix

sign - Variable in class org.textensor.stochdiff.numeric.math.Matrix

SIGNAL_TYPE - Static variable in interface org.catacomb.interlish.service.ScriptSource

SignatureComparator - Class in org.catacomb.act

SignatureComparator() - Constructor for class org.catacomb.act.SignatureComparator

siHS - Variable in class org.catacomb.druid.swing.DList

silentAddItem(V) - Method in class org.catacomb.interlish.content.KeyedList

silentAppendLine(String) - Method in class org.catacomb.interlish.content.StringValue

silentGetAsString() - Method in class org.catacomb.interlish.content.StringValue

silentSetBoolean(boolean) - Method in class org.catacomb.interlish.content.BooleanValue

silentSetColor(String) - Method in class org.catacomb.interlish.content.ColorValue

silentSetColor(int) - Method in class org.catacomb.interlish.content.ColorValue

silentSetDouble(double) - Method in class org.catacomb.interlish.content.DoubleValue

silentSetInteger(int) - Method in class org.catacomb.interlish.content.IntegerValue

silentSetObject(Object) - Method in class org.catacomb.interlish.content.ExternValue

silentSetQuantity(String, double) - Method in class org.catacomb.interlish.content.QuantifiedListValue

silentSetString(String) - Method in class org.catacomb.interlish.content.StringValue

SIMPLE - Static variable in class org.catacomb.druid.swing.DPopLabel

SIMPLE - Static variable in class org.catacomb.graph.gui.BoxSelectionHandler

SIMPLE - Static variable in class org.catacomb.graph.gui.PanHandler

SIMPLE - Static variable in class org.catacomb.graph.gui.RollHandler

SIMPLE - Static variable in class org.catacomb.graph.gui.TurntableHandler

simpleActivate() - Method in class org.catacomb.graph.gui.BoxSelectionHandler

simpleActivate() - Method in class org.catacomb.graph.gui.PanHandler

simpleActivate() - Method in class org.catacomb.graph.gui.RollHandler

simpleActivate() - Method in class org.catacomb.graph.gui.TurntableHandler

simpleContentSerialization(Element) - Method in class org.catacomb.interlish.reflect.ObjectBuilder

simpleCopy() - Method in class org.catacomb.druid.build.Context

simpleImport(String) - Static method in class org.catacomb.serial.Archivist

simpleLookup(String) - Static method in class org.catacomb.util.ColorUtil

simpleSerialization(Object) - Static method in class org.catacomb.serial.Archivist

SimpleSlider - Class in org.catacomb.druid.blocks

SimpleSlider() - Constructor for class org.catacomb.druid.blocks.SimpleSlider

SimpleSlider(String) - Constructor for class org.catacomb.druid.blocks.SimpleSlider

SimpleSpriteBlock - Class in org.catacomb.numeric.data

SimpleSpriteBlock(double, double[], double[], double[], double[]) - Constructor for class org.catacomb.numeric.data.SimpleSpriteBlock

simpleStroke(Graphics2D) - Method in class org.catacomb.druid.swing.DDropCanvas

simpleStroke(Graphics2D) - Method in class org.catacomb.druid.swing.DTextCanvas

simpleStroke(Graphics2D) - Method in class org.catacomb.graph.gui.BaseCanvas

SimpleVectorSprite - Class in org.catacomb.graph.gui

SimpleVectorSprite(double[], double[], int, int) - Constructor for class org.catacomb.graph.gui.SimpleVectorSprite

simulationSeed - Variable in class org.textensor.stochdiff.model.SDRun

sine - Variable in class org.catacomb.be.Direction

SinglePanelContainer - Class in org.catacomb.druid.blocks

SinglePanelContainer() - Constructor for class org.catacomb.druid.blocks.SinglePanelContainer

SingleParent - Interface in org.catacomb.interlish.structure

singletons - Variable in class org.catacomb.druid.gui.base.DruKitPanel

sites - Variable in class org.textensor.stochdiff.numeric.chem.StimulationTable

Sizable - Interface in org.catacomb.interlish.structure

size - Variable in class org.catacomb.dataview.build.DisplayablePoint

size() - Method in class org.catacomb.graph.arbor.SegmentGraph

Size - Class in org.catacomb.graph.gui

Size() - Constructor for class org.catacomb.graph.gui.Size

Size(double, double) - Constructor for class org.catacomb.graph.gui.Size

size() - Method in class org.catacomb.interlish.content.KeyedList

size() - Method in class org.catacomb.interlish.content.QuantifiedListValue

size() - Method in class org.catacomb.interlish.content.QuantityList

size() - Method in class org.catacomb.numeric.data.NumDataSet

size() - Method in class org.textensor.stochdiff.numeric.math.Column

size() - Method in class org.textensor.stochdiff.numeric.morph.VolumeGrid

Sized - Interface in org.catacomb.interlish.structure

Sizer - Interface in org.catacomb.interlish.structure

sizeSet - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

sizeSpecified - Variable in class org.catacomb.druid.swing.DScrollPane

slice(String) - Method in class org.catacomb.numeric.data.DataSetArray

slice - Variable in class org.catacomb.numeric.data.DataSlice

sliceHM - Variable in class org.catacomb.numeric.data.BlockStack

slices - Variable in class org.catacomb.numeric.data.BlockStack

Slider - Class in org.catacomb.druid.blocks

Slider() - Constructor for class org.catacomb.druid.blocks.Slider

Slider(String) - Constructor for class org.catacomb.druid.blocks.Slider

slider - Variable in class org.catacomb.druid.chunk.MoviePlayController

sliderMoved() - Method in class org.catacomb.dataview.FrameController

sliderMoved() - Method in class org.catacomb.dataview.gui.FramePlayerController

sliderMoved() - Method in class org.catacomb.druid.chunk.MoviePlayController

sliderMoved(String) - Method in class org.catacomb.druid.chunk.MoviePlayController

sliderMoved() - Method in class org.catacomb.graph.gui.AboveBelowSplitPanel

slightlyBrighter(Color) - Static method in class org.catacomb.util.ColorUtil

slightlyDarker(Color) - Static method in class org.catacomb.util.ColorUtil

Slot - Class in org.catacomb.druid.xtext.base

Slot(Guise, String) - Constructor for class org.catacomb.druid.xtext.base.Slot

slots - Variable in class org.catacomb.druid.xtext.base.Guise

slower() - Method in class org.catacomb.dataview.FrameController

slower() - Method in class org.catacomb.dataview.gui.FramePlayerController

slower() - Method in class org.catacomb.druid.chunk.MoviePlayController

slower() - Method in class org.catacomb.graph.gui.MovieDisplay

Slower - Class in org.catacomb.interlish.report

Slower() - Constructor for class org.catacomb.interlish.report.Slower

slower() - Method in interface org.catacomb.interlish.structure.MovieOperator

slurp(String) - Static method in class org.catacomb.util.DiffPrint

Read a text file into an array of String.

slw - Variable in class org.textensor.stochdiff.numeric.morph.VolumeLine

SMALL - Static variable in class org.catacomb.graph.gui.WorldTransform

smallBigMatchConnect(VolumeLine) - Method in class org.textensor.stochdiff.numeric.morph.VolumeLine

SMatrix - Class in org.catacomb.numeric.math

SMatrix() - Constructor for class org.catacomb.numeric.math.SMatrix

SmoothVolumeTest - Class in org.textensor.stochdiff.examples.smoothvolume

SmoothVolumeTest() - Constructor for class org.textensor.stochdiff.examples.smoothvolume.SmoothVolumeTest

Snapshot - Class in org.catacomb.druid.util

Snapshot() - Constructor for class org.catacomb.druid.util.Snapshot

Socket - Interface in org.catacomb.interlish.structure

Socketed - Interface in org.catacomb.interlish.structure

soleRegion() - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

source - Variable in class org.catacomb.dataview.build.FrameSelector

source - Variable in class org.catacomb.druid.blocks.Insert

source - Variable in class org.catacomb.druid.blocks.Requisite

source - Variable in class org.catacomb.druid.swing.dnd.RegionDragSource

source - Variable in class org.catacomb.druid.swing.DTreeDragSource

sourceCanvas - Variable in class org.catacomb.druid.swing.dnd.RegionDragSource

sourceFile - Variable in class org.catacomb.interlish.content.DocumentedComponent

sourceHM - Variable in class org.catacomb.interlish.service.ScriptManager

sourceLength - Variable in class org.catacomb.serial.xml.XMLReader

sourceLength - Variable in class org.textensor.xml.XMLReader

sourceLocation - Variable in class org.catacomb.druid.build.Context

sourcePath - Variable in class org.catacomb.dataview.FrameController

sourcePath - Variable in class org.catacomb.dataview.gui.FramePlayerController

sources - Variable in class org.catacomb.druid.blocks.InfoPanel

sources - Variable in class org.catacomb.druid.blocks.LogPanel

sources - Variable in class org.catacomb.druid.blocks.ScrollingInfoPanel

sources - Variable in class org.catacomb.numeric.data.DataExtractor

sourceStyle - Variable in class org.catacomb.xdoc.HTMLPage

sourceText - Variable in class org.catacomb.xdoc.HTMLPage

sourceTree - Variable in class org.catacomb.druid.swing.DTreeDragSource

sourceType - Variable in class org.catacomb.act.FunctionSignature

sourceType - Variable in class org.catacomb.act.MethodSignature

South - Class in org.catacomb.druid.blocks

South() - Constructor for class org.catacomb.druid.blocks.South

Sp(String) - Static method in class org.catacomb.datalish.array.Array

Sp(String) - Method in class org.catacomb.numeric.difnet.calc.OrderedNetMap

Sp(String) - Static method in class org.catacomb.numeric.math.DiagonalBlockMatrix

Sp(String) - Method in class org.catacomb.numeric.math.Matrix

Sp(String) - Static method in class org.catacomb.numeric.mesh.Discretizer

Sp(String) - Method in class org.textensor.stochdiff.numeric.math.Matrix

spacing - Variable in class org.catacomb.druid.gui.base.DruBoxPanel

span(double, double, int) - Static method in class org.textensor.util.ArrayUtil

spareGaussian - Variable in class org.textensor.stochdiff.numeric.math.MersenneTwister

sparseNetDiffuse(OrderedNetMap, double) - Method in class org.catacomb.numeric.difnet.calc.NetDiffuser

SpecialStrings - Class in org.catacomb.interlish.structure

SpecialStrings() - Constructor for class org.catacomb.interlish.structure.SpecialStrings

specids - Variable in class org.textensor.stochdiff.inter.SDState

Specie - Class in org.textensor.stochdiff.model

Specie() - Constructor for class org.textensor.stochdiff.model.Specie

specie_names_list - Variable in class org.textensor.stochdiff.numeric.BaseCalc

specieArray - Variable in class org.textensor.stochdiff.model.ReactionScheme

specieHM - Variable in class org.textensor.stochdiff.model.ReactionScheme

specieID - Variable in class org.textensor.stochdiff.model.Concentration

specieID - Variable in class org.textensor.stochdiff.model.InjectionStim

specieID - Variable in class org.textensor.stochdiff.model.PreserveTotal

specieID - Variable in class org.textensor.stochdiff.model.SpecieRef

specieID - Variable in class org.textensor.stochdiff.model.SurfaceDensity

SpecieIDList - Class in org.textensor.stochdiff.model

SpecieIDList() - Constructor for class org.textensor.stochdiff.model.SpecieIDList

specieIDs - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

specieIDs - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

specieIDs - Variable in class org.textensor.stochdiff.numeric.StaticCalc

specieIDs - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

specieNames - Variable in class org.catacomb.dataview.formats.MeshDataReader

SpecieRef - Class in org.textensor.stochdiff.model

SpecieRef() - Constructor for class org.textensor.stochdiff.model.SpecieRef

species - Variable in class org.textensor.stochdiff.model.ReactionScheme

speciesIDs - Variable in class org.textensor.stochdiff.numeric.chem.ReactionTable

speciesIDs - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

speciesIDs - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

speciesList - Variable in class org.textensor.stochdiff.numeric.BaseCalc

Specified - Interface in org.catacomb.interlish.structure

Specifier - Interface in org.catacomb.interlish.structure

specIndexesOut - Variable in class org.textensor.stochdiff.numeric.BaseCalc

specNamesOut - Variable in class org.textensor.stochdiff.numeric.BaseCalc

speed - Variable in class org.catacomb.dataview.FrameController

speed - Variable in class org.catacomb.dataview.gui.FramePlayerController

speed - Variable in class org.catacomb.graph.gui.MovieDisplay

SpineAllocation - Class in org.textensor.stochdiff.model

SpineAllocation() - Constructor for class org.textensor.stochdiff.model.SpineAllocation

spineDeltaX - Variable in class org.textensor.stochdiff.model.Discretization

spineDist - Variable in class org.textensor.stochdiff.disc.SpineLocator

SpineDistribution - Class in org.textensor.stochdiff.numeric.morph

SpineDistribution(SpinePopulation[]) - Constructor for class org.textensor.stochdiff.numeric.morph.SpineDistribution

spineDX - Variable in class org.textensor.stochdiff.disc.SpineLocator

SpineLocator - Class in org.textensor.stochdiff.disc

SpineLocator(int, SpineDistribution, double) - Constructor for class org.textensor.stochdiff.disc.SpineLocator

SpinePopulation - Class in org.textensor.stochdiff.numeric.morph

SpinePopulation(String, SpineProfile, String, double) - Constructor for class org.textensor.stochdiff.numeric.morph.SpinePopulation

SpineProfile - Class in org.textensor.stochdiff.numeric.morph

SpineProfile(String, double[], double[], String[], String[]) - Constructor for class org.textensor.stochdiff.numeric.morph.SpineProfile

spineSeed - Variable in class org.textensor.stochdiff.disc.SpineLocator

spineSeed - Variable in class org.textensor.stochdiff.model.SDRun

spineType - Variable in class org.textensor.stochdiff.model.SpineAllocation

SpineType - Class in org.textensor.stochdiff.model

SpineType() - Constructor for class org.textensor.stochdiff.model.SpineType

spineTypes - Variable in class org.textensor.stochdiff.model.Morphology

Splash - Class in org.catacomb.icon.splash

Splash(String, String) - Constructor for class org.catacomb.icon.splash.Splash

splash - Variable in class org.catacomb.icon.splash.Splasher

Splasher - Class in org.catacomb.icon.splash

Splasher(String) - Constructor for class org.catacomb.icon.splash.Splasher

splasher - Static variable in class org.catacomb.icon.splash.Splasher

splashScreen - Variable in class org.catacomb.druid.blocks.Application

SplashScreen - Class in org.catacomb.druid.blocks

SplashScreen() - Constructor for class org.catacomb.druid.blocks.SplashScreen

splashWindow - Variable in class org.catacomb.icon.splash.Splash

SplashWindow - Class in org.catacomb.icon.splash

SplashWindow(BufferedImage, Frame) - Constructor for class org.catacomb.icon.splash.SplashWindow

split(String) - Static method in class org.catacomb.druid.build.Scope

SplitSeparator - Class in org.catacomb.druid.blocks

SplitSeparator() - Constructor for class org.catacomb.druid.blocks.SplitSeparator

SplitterBarMouseListener - Class in org.catacomb.druid.swing.split

SplitterBarMouseListener(DSplitterBar) - Constructor for class org.catacomb.druid.swing.split.SplitterBarMouseListener

SplitterBarMouseMotionListener - Class in org.catacomb.druid.swing.split

SplitterBarMouseMotionListener(DSplitterBar) - Constructor for class org.catacomb.druid.swing.split.SplitterBarMouseMotionListener

SplitterExample - Class in org.catacomb.druid.swing.split

SplitterExample() - Constructor for class org.catacomb.druid.swing.split.SplitterExample

SplitterLayout - Class in org.catacomb.druid.swing.split

SplitterLayout is a layout manager that will layout a container holding other components and SplitterBars.

SplitterLayout() - Constructor for class org.catacomb.druid.swing.split.SplitterLayout

SplitterLayout(int) - Constructor for class org.catacomb.druid.swing.split.SplitterLayout

SpringUtilities - Class in org.catacomb.druid.swing

A 1.4 file that provides utility methods for creating form- or grid-style layouts with SpringLayout.

SpringUtilities() - Constructor for class org.catacomb.druid.swing.SpringUtilities

SpriteAnim - Interface in org.catacomb.numeric.data

SpriteAnimation - Interface in org.catacomb.datalish

spriteAt(String, double, double[], double[], double[], double[]) - Method in class org.catacomb.numeric.data.NumDataStore

SpriteData - Class in org.catacomb.datalish

SpriteData(String) - Constructor for class org.catacomb.datalish.SpriteData

SpriteEvents - Class in org.catacomb.datalish

SpriteEvents(ArrayList<Event>) - Constructor for class org.catacomb.datalish.SpriteEvents

spriteID - Variable in class org.catacomb.datalish.SpritePlacement

SpriteMarker - Class in org.catacomb.datalish

SpriteMarker(String, Position) - Constructor for class org.catacomb.datalish.SpriteMarker

SpriteMoviePainter - Class in org.catacomb.graph.gui

SpriteMoviePainter() - Constructor for class org.catacomb.graph.gui.SpriteMoviePainter

SpriteMoviePainter(SpriteAnimation) - Constructor for class org.catacomb.graph.gui.SpriteMoviePainter

SpritePart - Class in org.catacomb.datalish

SpritePart(double[], double[], double, SColor, SColor, int) - Constructor for class org.catacomb.datalish.SpritePart

SpritePlacement - Class in org.catacomb.datalish

SpritePlacement(String, Placement) - Constructor for class org.catacomb.datalish.SpritePlacement

sprites - Variable in class org.catacomb.datalish.SpriteStore

SpriteState - Annotation Type in org.catacomb.numeric.data

SpriteStore - Class in org.catacomb.datalish

SpriteStore() - Constructor for class org.catacomb.datalish.SpriteStore

spriteStore - Variable in class org.catacomb.numeric.data.AnimSlice

spriteStore - Variable in class org.catacomb.numeric.data.NumDataStore

Sq(String) - Static method in class org.catacomb.datalish.array.Array

SQUARE - Static variable in class org.catacomb.graph.drawing.ShapeSymmetry

Square - Class in org.catacomb.graph.drawing

Square() - Constructor for class org.catacomb.graph.drawing.Square

Square(double, double, double, double) - Constructor for class org.catacomb.graph.drawing.Square

SQUARE - Static variable in class org.catacomb.graph.gui.PickablePoint

src - Variable in class org.catacomb.be.ChangeEvent

src - Variable in class org.catacomb.druid.blocks.ChildrenOf

src - Variable in class org.catacomb.druid.blocks.SplashScreen

src - Variable in class org.catacomb.druid.blocks.StateImage

srcObject - Variable in class org.catacomb.druid.xtext.base.TextFloat

srcPattern - Variable in class org.catacomb.druid.manifest.MultiManifester

srcPoints - Variable in class org.textensor.stochdiff.disc.DiscBoxer

srcPoints - Variable in class org.textensor.stochdiff.disc.DiscSplitter

srcPoints - Variable in class org.textensor.stochdiff.disc.LineBoxer

srcPoints - Variable in class org.textensor.stochdiff.disc.SegmentSlicer

srcPoints - Variable in class org.textensor.stochdiff.disc.TreeBoxDiscretizer

srcPoints - Variable in class org.textensor.stochdiff.disc.TreeCurvedElementDiscretizer

srcptHM - Variable in class org.textensor.stochdiff.neuroml.cell

srcs - Variable in class org.catacomb.druid.gui.edit.IconSwitcher

srcSlice - Variable in class org.catacomb.numeric.data.DDSubSlice

srcString - Variable in class org.catacomb.serial.xml.XMLTokenizer

srcString - Variable in class org.textensor.xml.XMLTokenizer

ss - Variable in class org.catacomb.util.WSString

Stack<V> - Class in org.catacomb.interlish.content

Stack() - Constructor for class org.catacomb.interlish.content.Stack

stack(RunDataBlock) - Method in class org.catacomb.numeric.data.NumDataStore

stack(String, double) - Method in class org.catacomb.numeric.data.NumDataStore

stack(String, double[]) - Method in class org.catacomb.numeric.data.NumDataStore

stack(String, String[], double[]) - Method in class org.catacomb.numeric.data.NumDataStore

stack(String, RunDataBlock) - Method in class org.catacomb.numeric.data.NumDataStore

stackHM - Variable in class org.catacomb.numeric.data.NumDataStore

StackMultipleSlice - Class in org.catacomb.numeric.data

StackMultipleSlice(BlockStack, String, Field, String, String) - Constructor for class org.catacomb.numeric.data.StackMultipleSlice

StackSingleSlice - Class in org.catacomb.numeric.data

StackSingleSlice(BlockStack, String, Field, String, String) - Constructor for class org.catacomb.numeric.data.StackSingleSlice

StackSlice - Class in org.catacomb.numeric.data

StackSlice(BlockStack, String, Field, String, String) - Constructor for class org.catacomb.numeric.data.StackSlice

stackTrace() - Static method in class org.catacomb.report.E

stackTrace() - Static method in class org.textensor.report.E

stampTime(double) - Method in class org.catacomb.numeric.data.SceneBlock

stampTime(double) - Method in interface org.catacomb.numeric.data.Timestampable

Standalone - Interface in org.catacomb.interlish.structure

standardColors - Static variable in class org.catacomb.util.ColorUtil

StandardColors - Class in org.catacomb.util

StandardColors() - Constructor for class org.catacomb.util.StandardColors

StandardGuises - Class in org.catacomb.druid.xtext

StandardGuises() - Constructor for class org.catacomb.druid.xtext.StandardGuises

StandardPalette - Class in org.catacomb.druid.color

StandardPalette() - Constructor for class org.catacomb.druid.color.StandardPalette

start() - Method in class org.catacomb.dataview.FrameController

start() - Method in class org.catacomb.dataview.gui.FramePlayer

start() - Method in class org.catacomb.dataview.gui.FramePlayerController

start() - Method in class org.catacomb.graph.gui.HoverTimer

start() - Method in class org.catacomb.graph.gui.MovieDisplay

start() - Method in class org.catacomb.graph.gui.MovieFramePlayer

start() - Method in interface org.catacomb.interlish.structure.MovieOperator

start() - Method in interface org.catacomb.interlish.structure.RunProcess

start(OutputStream) - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Initiates GIF file creation on the given stream.

start(File) - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Initiates writing of a GIF file with the specified name.

start - Variable in class org.textensor.stochdiff.model.Segment

startArrayDeclaration(String, String) - Method in class org.catacomb.act.Classdef

startBox() - Method in class org.catacomb.graph.gui.Painter

started - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

startMesh() - Method in interface org.catacomb.interlish.structure.MeshBuilder

startMesh() - Method in class org.catacomb.numeric.mesh.DifMeshBuilder

startRangeRecording() - Method in class org.catacomb.graph.gui.WorldTransform

startText - Variable in class org.catacomb.serial.xml.XMLReader

starttime - Variable in class org.textensor.stochdiff.model.SDRun

state - Variable in class org.catacomb.druid.blocks.AbleEffect

state - Variable in class org.catacomb.druid.swing.DFloatSlider

state - Variable in class org.catacomb.druid.swing.DSlider

state - Variable in class org.catacomb.druid.swing.DToggleButton

stateChanged(String) - Method in interface org.catacomb.druid.event.StateListener

stateChanged(String) - Method in class org.catacomb.druid.gui.edit.IconSwitcher

stateChanged(ChangeEvent) - Method in class org.catacomb.druid.swing.DChoice

stateChanged(ChangeEvent) - Method in class org.catacomb.druid.swing.DSimpleSlider

stateChanged(ChangeEvent) - Method in class org.catacomb.druid.swing.DTabbedPane

stateChanged(ChangeEvent) - Method in class org.catacomb.druid.swing.DValueHistory

stateChanged(RunProcess) - Method in interface org.catacomb.interlish.structure.ProcessWatcher

stateChanged(ChangeEvent) - Method in class org.textensor.vis.SceneGraphViewer

stateExposure - Variable in class org.catacomb.druid.blocks.Application

StateImage - Class in org.catacomb.druid.blocks

StateImage() - Constructor for class org.catacomb.druid.blocks.StateImage

stateImages - Variable in class org.catacomb.druid.blocks.ImageLabel

StateInstance - Class in org.catacomb.serial.state

StateInstance(String) - Constructor for class org.catacomb.serial.state.StateInstance

Stateless - Interface in org.catacomb.interlish.structure

StateLink - Interface in org.catacomb.numeric.difnet

a link in a diffusive net.

StateListener - Interface in org.catacomb.druid.event

StateNode - Interface in org.catacomb.numeric.difnet

a node in a diffusive network.

StateProcess - Interface in org.catacomb.interlish.structure

StateQueryable - Interface in org.catacomb.interlish.structure

StateReader - Class in org.textensor.stochdiff.inter

StateReader() - Constructor for class org.textensor.stochdiff.inter.StateReader

states - Variable in class org.catacomb.druid.gui.edit.IconSwitcher

stateSaveInterval - Variable in class org.textensor.stochdiff.model.SDRun

stateSavePrefix - Variable in class org.textensor.stochdiff.model.SDRun

stateSaveTime - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

stateSaveTime - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

stateSaveTime - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

stateSettable - Static variable in class org.catacomb.druid.swing.DFrame

STATIC - Static variable in interface org.catacomb.dataview.formats.DataHandler

StaticCalc - Class in org.textensor.stochdiff.numeric

StaticCalc(SDRun) - Constructor for class org.textensor.stochdiff.numeric.StaticCalc

staticCalc - Variable in class org.textensor.stochdiff.reduce.Reducer

Status - Class in org.catacomb.interlish.report

Status() - Constructor for class org.catacomb.interlish.report.Status

StatusBar - Class in org.catacomb.druid.blocks

StatusBar() - Constructor for class org.catacomb.druid.blocks.StatusBar

StatusBoard - Class in org.catacomb.druid.market

StatusBoard() - Constructor for class org.catacomb.druid.market.StatusBoard

StatusDisplay - Interface in org.catacomb.interlish.structure

statusLabel - Variable in class org.catacomb.druid.swing.DListProgressRenderer

StatusSource - Interface in org.catacomb.interlish.structure

stdColorNames - Static variable in class org.catacomb.util.ColorUtil

stdColors - Static variable in class org.catacomb.util.ColorUtil

StepGenerator - Class in org.textensor.stochdiff.numeric.stochastic

StepGenerator() - Constructor for class org.textensor.stochdiff.numeric.stochastic.StepGenerator

StepgenTests - Class in org.textensor.stochdiff

StepgenTests() - Constructor for class org.textensor.stochdiff.StepgenTests

SteppedStochaticGridCalc - Class in org.textensor.stochdiff.numeric.grid

SteppedStochaticGridCalc(SDRun) - Constructor for class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

Stepper - Interface in org.catacomb.interlish.structure

stepResiduals(Column, Column, double) - Method in class org.textensor.stochdiff.numeric.chem.ReactionTable

stimProcesses - Variable in class org.textensor.stochdiff.model.StimulationSet

stimTab - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

stimTab - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

stimTab - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

stimtargets - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

stimtargets - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

stimtargets - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

stimulationFile - Variable in class org.textensor.stochdiff.model.SDRun

stimulationSet - Variable in class org.textensor.stochdiff.model.SDRun

StimulationSet - Class in org.textensor.stochdiff.model

StimulationSet() - Constructor for class org.textensor.stochdiff.model.StimulationSet

stimulationTable - Variable in class org.textensor.stochdiff.numeric.BaseCalc

StimulationTable - Class in org.textensor.stochdiff.numeric.chem

StimulationTable() - Constructor for class org.textensor.stochdiff.numeric.chem.StimulationTable

stimulus - Variable in class org.catacomb.numeric.difnet.model.BasicStateNode

Stimulus - Interface in org.catacomb.numeric.difnet

StochDiff - Class in org.textensor.stochdiff

StochDiff() - Constructor for class org.textensor.stochdiff.StochDiff

stok(int) - Method in class org.catacomb.serial.xml.XMLTokenizer

stok(int) - Method in class org.textensor.xml.XMLTokenizer

stop() - Method in class org.catacomb.dataview.FrameController

stop() - Method in class org.catacomb.dataview.gui.FramePlayer

stop() - Method in class org.catacomb.dataview.gui.FramePlayerController

stop() - Method in class org.catacomb.druid.chunk.MoviePlayController

stop() - Method in class org.catacomb.graph.gui.MovieDisplay

stop() - Method in class org.catacomb.graph.gui.MovieFramePlayer

stop() - Method in interface org.catacomb.interlish.structure.MovieOperator

stoppedIcon - Variable in class org.catacomb.druid.swing.DListProgressRenderer

stopRangeRecording() - Method in class org.catacomb.graph.gui.WorldTransform

store - Variable in class org.catacomb.druid.blocks.Checkbox

store - Variable in class org.catacomb.druid.blocks.Choice

store - Variable in class org.catacomb.druid.blocks.ColorChoice

store - Variable in class org.catacomb.druid.blocks.FloatSlider

store - Variable in class org.catacomb.druid.blocks.IntSlider

store - Variable in class org.catacomb.druid.blocks.LabelledTextField

store - Variable in class org.catacomb.druid.blocks.RadioButtons

store - Variable in class org.catacomb.druid.blocks.TextArea

store - Variable in class org.catacomb.druid.blocks.TextField

store - Variable in class org.catacomb.druid.blocks.ToggleButton

store - Variable in class org.catacomb.druid.load.DruidContentLoader

store - Variable in class org.catacomb.numeric.data.BlockStack

store - Variable in class org.catacomb.numeric.data.NDSAccessor

storeChanged(String) - Method in interface org.catacomb.interlish.structure.StoreWatcher

StoreWatcher - Interface in org.catacomb.interlish.structure

storeXMLOnly(Object, File) - Static method in class org.catacomb.serial.Archivist

storeXMLWithReferents(Object, File) - Static method in class org.catacomb.serial.Archivist

StraightLine - Class in org.catacomb.graph.drawing

StraightLine() - Constructor for class org.catacomb.graph.drawing.StraightLine

StraightLine(double, double, double, double) - Constructor for class org.catacomb.graph.drawing.StraightLine

streamTokenizer - Variable in class org.catacomb.serial.xml.XMLTokenizer

streamTokenizer - Variable in class org.textensor.xml.XMLTokenizer

string - Variable in class org.catacomb.datalish.SColor

STRING - Static variable in class org.catacomb.serial.xml.XMLToken

STRING - Static variable in class org.textensor.xml.XMLToken

stringAction(String) - Method in interface org.catacomb.interlish.structure.StringActor

StringActor - Interface in org.catacomb.interlish.structure

StringArrayUser - Interface in org.catacomb.druid.event

stringd(double) - Method in class org.textensor.stochdiff.numeric.BaseCalc

stringDims() - Method in class org.textensor.stochdiff.numeric.math.Matrix

StringEncoder - Class in org.catacomb.serial.xml

StringEncoder() - Constructor for class org.catacomb.serial.xml.StringEncoder

StringEncoder - Class in org.textensor.xml

StringEncoder() - Constructor for class org.textensor.xml.StringEncoder

stringi(int) - Method in class org.textensor.stochdiff.numeric.BaseCalc

StringIdentifiable - Interface in org.catacomb.be

stringify(double[]) - Static method in class org.catacomb.serial.SerialUtil

stringify(int[]) - Static method in class org.catacomb.serial.SerialUtil

stringifyObject(Object) - Static method in class org.catacomb.serial.SerialUtil

StringPlotElement - Class in org.catacomb.dataview

StringPlotElement(double, double, String) - Constructor for class org.catacomb.dataview.StringPlotElement

StringPlotElement(double, double, Color, String) - Constructor for class org.catacomb.dataview.StringPlotElement

StringPlotElement(double, double, Color, String, int, int) - Constructor for class org.catacomb.dataview.StringPlotElement

StringQuietWriter - Class in org.catacomb.interlish.report

StringQuietWriter() - Constructor for class org.catacomb.interlish.report.StringQuietWriter

StringTree - Class in org.catacomb.util

StringTree(String, String) - Constructor for class org.catacomb.util.StringTree

StringTreeLeaf - Class in org.catacomb.util

StringTreeLeaf(String) - Constructor for class org.catacomb.util.StringTreeLeaf

StringUser - Interface in org.catacomb.druid.event

StringUtil - Class in org.catacomb.util

StringUtil() - Constructor for class org.catacomb.util.StringUtil

stringValue - Variable in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

stringValue - Variable in class org.catacomb.druid.gui.edit.DruChoice

stringValue - Variable in class org.catacomb.druid.gui.edit.DruExpandingTextArea

stringValue - Variable in class org.catacomb.druid.gui.edit.DruHTMLPanel

stringValue - Variable in class org.catacomb.druid.gui.edit.DruLabelledTextField

stringValue - Variable in class org.catacomb.druid.gui.edit.DruRadioButtons

stringValue - Variable in class org.catacomb.druid.gui.edit.DruTextArea

stringValue - Variable in class org.catacomb.druid.gui.edit.DruTextField

StringValue - Class in org.catacomb.interlish.content

StringValue() - Constructor for class org.catacomb.interlish.content.StringValue

StringValue(String) - Constructor for class org.catacomb.interlish.content.StringValue

StringValue(String, boolean) - Constructor for class org.catacomb.interlish.content.StringValue

StringValueEditor - Interface in org.catacomb.interlish.structure

StringValueSettable - Interface in org.catacomb.interlish.structure

stringWidth(Graphics, String) - Method in class org.catacomb.druid.xtext.canvas.FontStore

stringWidth(String) - Method in class org.catacomb.graph.gui.Painter

stripLengths - Variable in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

strips - Variable in class org.textensor.stochdiff.numeric.morph.TrianglesSet

strokes - Variable in class org.catacomb.graph.gui.DisplayStrokes

Struct - Annotation Type in org.catacomb.numeric.data

StructElement - Class in org.catacomb.be

StructElement(String, String) - Constructor for class org.catacomb.be.StructElement

Structure - Interface in org.catacomb.interlish.structure

structure - Variable in class org.catacomb.numeric.difnet.model.BasicNetState

structure - Variable in class org.catacomb.numeric.difnet.model.BasicStateLink

structure - Variable in class org.catacomb.numeric.difnet.model.BasicStateNode

structureChanged(Object, String) - Method in interface org.catacomb.interlish.structure.StructureWatcher

StructureLink - Interface in org.catacomb.numeric.difnet

properties of a link in a NetStructure.

StructureNode - Interface in org.catacomb.numeric.difnet

properties of a node in a diffusible network.

StructureWatcher - Interface in org.catacomb.interlish.structure

stubs - Variable in class org.catacomb.act.ScriptStubs

style - Variable in class org.catacomb.druid.blocks.FloatSlider

style - Variable in class org.catacomb.druid.blocks.IntSlider

style - Variable in class org.catacomb.druid.blocks.Label

style - Variable in class org.catacomb.graph.gui.DataView

styleNames - Variable in class org.catacomb.graph.gui.DisplayStrokes

styleNames - Static variable in class org.catacomb.graph.gui.DisplayStyleSet

styleSets - Variable in class org.catacomb.graph.gui.DisplayStylesData

stylesheet - Variable in class org.catacomb.druid.blocks.ScrollingHTMLPanel

styleSheet - Variable in class org.catacomb.druid.swing.DEditorPane

styleSheet - Variable in class org.catacomb.druid.swing.DHTMLPane

subAddDComponent(DComponent) - Method in class org.catacomb.druid.gui.base.DruBoxPanel

subAddDComponent(DComponent) - Method in class org.catacomb.druid.gui.base.DruFormPanel

subAddDComponent(DComponent) - Method in class org.catacomb.druid.gui.base.DruPseudoCardPanel

subAddDComponent(DComponent) - Method in class org.catacomb.druid.gui.base.DruScrollPanel

subAddDComponent(DComponent) - Method in class org.catacomb.druid.gui.base.DruSubcontainerPanel

subAddPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruBoxPanel

subAddPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruFormPanel

subAddPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruPseudoCardPanel

subAddPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruScrollPanel

subAddPanel(DruPanel) - Method in class org.catacomb.druid.gui.base.DruSubcontainerPanel

subAreaPeer - Variable in class org.textensor.stochdiff.numeric.morph.TreePoint

subclassImports - Variable in class org.catacomb.act.Classdef

subclassName - Variable in class org.catacomb.act.Classdef

subConstructor - Variable in class org.catacomb.act.Classdef

subdivDx - Variable in class org.catacomb.datalish.Box

subdivDy - Variable in class org.catacomb.datalish.Box

subdivide(int) - Method in class org.catacomb.datalish.Box

submembrane - Variable in class org.textensor.stochdiff.numeric.morph.VolumeElement

submembranes - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

submembranes - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

submembranes - Variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

submembranes - Variable in class org.textensor.stochdiff.numeric.StaticCalc

submembranes - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

SubMenu - Class in org.catacomb.druid.blocks

SubMenu() - Constructor for class org.catacomb.druid.blocks.SubMenu

subPlaneConnect(TreePoint, TreePoint, CurvedVolumeSlice, double) - Method in class org.textensor.stochdiff.disc.CurvedVolumeSlice

subPlaneConnect(TreePoint, TreePoint, VolumeLine, double) - Method in class org.textensor.stochdiff.numeric.morph.VolumeLine

subPlaneConnect(TreePoint, TreePoint, VolumeSlice, double) - Method in class org.textensor.stochdiff.numeric.morph.VolumeSlice

subRemoveAll() - Method in class org.catacomb.druid.gui.base.DruBoxPanel

subRemoveAll() - Method in class org.catacomb.druid.gui.base.DruFormPanel

subRemoveAll() - Method in class org.catacomb.druid.gui.base.DruPseudoCardPanel

subRemoveAll() - Method in class org.catacomb.druid.gui.base.DruScrollPanel

subRemoveAll() - Method in class org.catacomb.druid.gui.base.DruSubcontainerPanel

subselect(int) - Method in interface org.catacomb.interlish.structure.Subselectable

Subselectable - Interface in org.catacomb.interlish.structure

subslice - Variable in class org.catacomb.numeric.data.DataSlice

subsliceArray - Variable in class org.catacomb.numeric.data.DataSlice

subtract(Position) - Method in class org.catacomb.be.Position

subtract(IntPosition) - Method in class org.catacomb.interlish.content.IntPosition

subtract(Matrix) - Method in class org.textensor.stochdiff.numeric.math.Matrix

subtractIdentity() - Method in class org.textensor.stochdiff.numeric.math.Matrix

subtreeify(RelationNode, ArrayList, String) - Method in class org.catacomb.druid.util.tree.RelationNode

suggest() - Method in class org.catacomb.druid.gui.edit.DruButton

suggest() - Method in class org.catacomb.druid.swing.DBaseButton

suggest() - Method in class org.catacomb.druid.swing.DButton

suggest() - Method in class org.catacomb.druid.swing.DToggleButton

suggest() - Method in interface org.catacomb.interlish.structure.Suggestible

SuggestEffect - Class in org.catacomb.druid.blocks

SuggestEffect() - Constructor for class org.catacomb.druid.blocks.SuggestEffect

Suggestible - Interface in org.catacomb.interlish.structure

sum(double[][]) - Static method in class org.catacomb.numeric.array.MDA

sum(double[]) - Static method in class org.catacomb.numeric.array.MDA

sum(Matrix) - Method in class org.catacomb.numeric.math.Matrix

sum(Matrix) - Method in class org.textensor.stochdiff.numeric.math.Matrix

summary - Variable in class org.catacomb.interlish.report.Message

SUPER_SOURCE - Static variable in class org.catacomb.act.MethodSignature

SuperCallConstructor - Class in org.catacomb.act

SuperCallConstructor(String) - Constructor for class org.catacomb.act.SuperCallConstructor

SuperCallConstructor(String, String) - Constructor for class org.catacomb.act.SuperCallConstructor

Supercedable<V> - Interface in org.catacomb.interlish.structure

superceded(V) - Method in class org.catacomb.interlish.content.KeyedList

superceded() - Method in interface org.catacomb.interlish.structure.Supercedable

superdefd - Variable in class org.catacomb.act.MethodSignature

superDefined() - Method in class org.catacomb.act.MethodSignature

Supplier - Interface in org.catacomb.interlish.structure

suppliers - Variable in class org.catacomb.druid.market.ProducerConsumerBoard

SupplyAgent - Class in org.catacomb.druid.market

SupplyAgent() - Constructor for class org.catacomb.druid.market.SupplyAgent

SupplyClerk - Class in org.catacomb.druid.market

SupplyClerk(String) - Constructor for class org.catacomb.druid.market.SupplyClerk

supplySize(double, double, double, double) - Method in class org.textensor.stochdiff.model.EndPoint

surfaceAreas - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

surfaceAreas - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

surfaceAreas - Variable in class org.textensor.stochdiff.numeric.StaticCalc

surfaceAreas - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

surfaceBoundary - Variable in class org.textensor.stochdiff.numeric.morph.VolumeElement

SurfaceDensity - Class in org.textensor.stochdiff.model

SurfaceDensity() - Constructor for class org.textensor.stochdiff.model.SurfaceDensity

SurfaceDensitySet - Class in org.textensor.stochdiff.model

SurfaceDensitySet() - Constructor for class org.textensor.stochdiff.model.SurfaceDensitySet

surfaceLayer - Variable in class org.textensor.stochdiff.model.Discretization

surfaceLayers - Variable in class org.textensor.stochdiff.disc.DiscBoxer

surfaceLayers - Variable in class org.textensor.stochdiff.disc.DiscSplitter

surfaceLayers - Variable in class org.textensor.stochdiff.disc.LineBoxer

surfaceLayers - Variable in class org.textensor.stochdiff.model.Discretization

SurfaceLayers - Class in org.textensor.stochdiff.model

SurfaceLayers() - Constructor for class org.textensor.stochdiff.model.SurfaceLayers

svalue - Variable in class org.catacomb.graph.gui.GraphContextMenu.GCMHandler

sValue - Variable in class org.catacomb.interlish.content.NVPair

svalue - Variable in class org.catacomb.serial.xml.XMLToken

svalue - Variable in class org.textensor.xml.XMLToken

sw - Variable in class org.catacomb.interlish.report.StringQuietWriter

swapOrientation() - Method in class org.catacomb.druid.swing.split.DSplitterBar

swapOrientation(Container) - Method in class org.catacomb.druid.swing.split.SplitterLayout

SWCDisplay - Class in org.catacomb.dataview.formats

SWCDisplay() - Constructor for class org.catacomb.dataview.formats.SWCDisplay

SWCDisplay.Node - Class in org.catacomb.dataview.formats

SWCDisplay.Node(int, double, double, double, double, SWCDisplay.Node) - Constructor for class org.catacomb.dataview.formats.SWCDisplay.Node

symmetry - Variable in class org.catacomb.graph.drawing.GenericShape

symmetry - Variable in class org.catacomb.graph.drawing.Shape

symmetryNames - Static variable in class org.catacomb.graph.drawing.ShapeSymmetry

sync() - Method in class org.catacomb.druid.gui.edit.DruCheckboxMenuItem

sync() - Method in class org.catacomb.druid.gui.edit.DruMenu

sync() - Method in class org.catacomb.druid.gui.edit.DruMenuItem

sync() - Method in interface org.catacomb.interlish.structure.Syncable

sync() - Method in class org.catacomb.serial.quickxml.XMLFileElement

Syncable - Interface in org.catacomb.interlish.structure

syncArrays() - Method in class org.catacomb.graph.drawing.Shape

syncEffects() - Method in class org.catacomb.druid.gui.edit.DruCheckbox

syncEffects() - Method in class org.catacomb.druid.gui.edit.DruLabelledTextField

syncExtensionProto() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

syncFromKeyedList() - Method in class org.catacomb.druid.gui.edit.DruListPanel

syncFromOperator() - Method in class org.catacomb.druid.chunk.MoviePlayController

syncFromOperator() - Method in interface org.catacomb.interlish.structure.MovieController

Synchronizee - Interface in org.catacomb.interlish.structure

Synchronizer - Interface in org.catacomb.interlish.structure

synchronizeTo(Object) - Method in interface org.catacomb.interlish.structure.Synchronizee

syncIcon() - Method in interface org.catacomb.graph.drawing.VectorIconAdopter

syncLocation() - Method in interface org.catacomb.interlish.structure.Plug

syncOptions() - Method in class org.catacomb.dataview.gui.CCVizController

syncOptions() - Method in class org.catacomb.dataview.gui.DViewController

syncRangeDelta() - Method in class org.catacomb.interlish.content.ColorTable

syncSize() - Method in class org.catacomb.graph.gui.WorldCanvas

syncSizes() - Method in class org.catacomb.druid.gui.base.DruDataDisplay

syncSizes() - Method in class org.catacomb.graph.gui.DataDisplay

SYSTEM_SOURCE - Static variable in interface org.catacomb.act.BlockSignature

SYSTEM_SOURCE - Static variable in class org.catacomb.act.MethodSignature

systemLog - Static variable in class org.catacomb.druid.guimodel.Log

SystemTime - Class in org.catacomb.interlish.service

SystemTime() - Constructor for class org.catacomb.interlish.service.SystemTime

T

ta - Variable in class org.catacomb.druid.swing.DPlainTextEditor

TabbedPanel - Class in org.catacomb.druid.blocks

TabbedPanel() - Constructor for class org.catacomb.druid.blocks.TabbedPanel

Table - Interface in org.catacomb.interlish.structure

TableDataHandler - Class in org.catacomb.dataview.formats

TableDataHandler() - Constructor for class org.catacomb.dataview.formats.TableDataHandler

TableDataReader - Class in org.catacomb.dataview.formats

TableDataReader(TableDataHandler) - Constructor for class org.catacomb.dataview.formats.TableDataReader

TableEditor - Interface in org.catacomb.interlish.structure

TablePeer - Interface in org.catacomb.interlish.structure

tables - Variable in class org.textensor.stochdiff.numeric.stochastic.FixedPStepGenerator

TableTree - Class in org.catacomb.druid.blocks

TableTree() - Constructor for class org.catacomb.druid.blocks.TableTree

tabNames - Variable in class org.catacomb.druid.swing.DTabbedPane

tag - Variable in class org.catacomb.druid.blocks.StateImage

tag - Variable in class org.catacomb.druid.swing.DTextField

tag - Variable in class org.catacomb.graph.gui.PickableRegion

tag - Variable in class org.catacomb.interlish.content.DocumentedComponent

tag - Variable in class org.catacomb.numeric.difnet.model.PointRecorder

tag - Variable in class org.catacomb.numeric.difnet.model.PointStim

tag - Variable in class org.textensor.stochdiff.neuroml.meta

Taggable - Interface in org.catacomb.interlish.structure

Tagged - Interface in org.catacomb.interlish.structure

Tagger - Interface in org.catacomb.interlish.structure

tagger - Static variable in class org.catacomb.xdoc.TextTagger

tags - Variable in class org.catacomb.druid.gui.base.DruImageLabelPanel

tags - Variable in class org.catacomb.druid.swing.dnd.RegionStore

tagText(String) - Method in class org.catacomb.xdoc.TextTagger

taper() - Method in class org.textensor.vis.IcingPoint

TAPERED - Static variable in class org.textensor.vis.IcingPoint

target - Variable in class org.catacomb.druid.blocks.AbleEffect

target - Variable in class org.catacomb.druid.blocks.CardSelectionEffect

target - Variable in class org.catacomb.druid.blocks.CloseEffect

target - Variable in class org.catacomb.druid.blocks.SuggestEffect

target - Variable in class org.catacomb.druid.blocks.WindowEditEffect

target - Variable in class org.catacomb.druid.gui.edit.Effect

target - Variable in class org.catacomb.druid.gui.edit.IconSwitcher

target - Variable in class org.catacomb.druid.swing.dnd.RegionDropTarget

target - Variable in class org.catacomb.druid.swing.dnd.TextFieldDropTarget

target - Variable in class org.catacomb.druid.swing.DPlainTextEditor

target - Variable in class org.catacomb.druid.swing.DTreeDropTarget

target - Variable in class org.catacomb.interlish.reflect.ObjectAccessor

target - Variable in class org.catacomb.interlish.reflect.ReflectionWrapper

target - Variable in class org.catacomb.interlish.structure.Relationship

Targetable - Interface in org.catacomb.interlish.structure

targetChanged(Object, Object) - Method in interface org.catacomb.interlish.structure.TargetWatcher

Targeted - Interface in org.catacomb.interlish.structure

targetID - Variable in class org.catacomb.druid.gui.edit.Effect

targetIndex - Variable in class org.catacomb.numeric.difnet.model.PointStim

targetKL - Variable in class org.catacomb.druid.gui.edit.DruListPanel

targetRegion - Variable in class org.textensor.stochdiff.numeric.morph.SpinePopulation

TargetReporter - Interface in org.catacomb.interlish.structure

targets - Variable in class org.catacomb.druid.util.tree.RelationNode

targetStore - Variable in class org.catacomb.druid.build.AnnotationConnector

targetStore - Variable in class org.catacomb.druid.build.GUIStore

targetStore - Variable in class org.catacomb.druid.gui.edit.DruMenuButton

targetStore - Variable in class org.catacomb.druid.gui.edit.Effect

TargetStore - Interface in org.catacomb.interlish.structure

TargetStoreBoard - Class in org.catacomb.druid.market

TargetStoreBoard() - Constructor for class org.catacomb.druid.market.TargetStoreBoard

TargetStoreUser - Interface in org.catacomb.interlish.structure

targetTree - Variable in class org.catacomb.druid.swing.DTreeDropTarget

TargetWatcher - Interface in org.catacomb.interlish.structure

TaskProgressDisplay - Interface in org.catacomb.druid.util

TCRenderer - Class in org.catacomb.druid.swing

TCRenderer() - Constructor for class org.catacomb.druid.swing.TCRenderer

tcReporter - Variable in class org.catacomb.druid.util.tree.RelationTree

tcReporter - Variable in class org.catacomb.druid.xtext.base.DocStore

tcReporter - Variable in class org.catacomb.numeric.data.BlockStack

tcReporter - Variable in class org.catacomb.numeric.data.NumDataStore

tcTrans - Variable in class org.textensor.vis.SceneGraphViewer

TEMPERING_MASK_B - Static variable in class org.textensor.stochdiff.numeric.math.MersenneTwister

TEMPERING_MASK_C - Static variable in class org.textensor.stochdiff.numeric.math.MersenneTwister

TestReader - Class in org.catacomb.dataview.test

TestReader() - Constructor for class org.catacomb.dataview.test.TestReader

text - Variable in class org.catacomb.druid.blocks.ContainerPanel

text - Variable in class org.catacomb.druid.blocks.DashedLine

text - Variable in class org.catacomb.druid.blocks.FillGuage

text - Variable in class org.catacomb.druid.blocks.InfoButton

text - Variable in class org.catacomb.druid.blocks.InfoPanel

text - Variable in class org.catacomb.druid.blocks.Label

text - Variable in class org.catacomb.druid.blocks.LogPanel

text - Variable in class org.catacomb.druid.blocks.Placeholder

text - Variable in class org.catacomb.druid.blocks.PrintEffect

text - Variable in class org.catacomb.druid.blocks.ProgressReport

text - Variable in class org.catacomb.druid.blocks.ScrollingInfoPanel

text - Variable in class org.catacomb.druid.blocks.StatusBar

text - Variable in class org.catacomb.druid.gui.base.DruLabel

text - Variable in class org.catacomb.druid.gui.base.DruLabelPanel

text - Variable in class org.catacomb.druid.gui.base.DruPrintEffect

text - Variable in class org.catacomb.druid.gui.edit.DruProgressReport

text - Variable in class org.catacomb.druid.guimodel.LogEntry

text - Variable in class org.catacomb.druid.swing.DDropCanvas

text - Variable in class org.catacomb.druid.xtext.base.TextBlock

text - Variable in class org.catacomb.druid.xtext.base.TextFloat

text - Variable in class org.catacomb.interlish.content.StringValue

TEXT - Static variable in class org.textensor.stochdiff.ResultWriter

TextActor - Interface in org.catacomb.druid.event

textActor - Variable in class org.catacomb.druid.swing.DTextArea

textActor - Variable in class org.catacomb.druid.swing.DTextField

textAdded() - Method in class org.catacomb.druid.gui.base.DruInfoPanel

textAdded() - Method in class org.catacomb.druid.gui.base.DruScrollingInfoPanel

TextArea - Class in org.catacomb.druid.blocks

TextArea() - Constructor for class org.catacomb.druid.blocks.TextArea

TextArea - Interface in org.catacomb.interlish.structure

TextBlock - Class in org.catacomb.druid.xtext.base

TextBlock() - Constructor for class org.catacomb.druid.xtext.base.TextBlock

TextBlock(String) - Constructor for class org.catacomb.druid.xtext.base.TextBlock

textBoard - Variable in class org.catacomb.druid.xtext.canvas.KeyWriter

TextBoard - Class in org.catacomb.druid.xtext.canvas

TextBoard(DTextCanvas) - Constructor for class org.catacomb.druid.xtext.canvas.TextBoard

textBuffer - Variable in class org.catacomb.druid.guimodel.Log

textCanvas - Variable in class org.catacomb.druid.swing.dnd.RegionDropTarget

textChanged(String) - Method in interface org.catacomb.druid.event.TextActor

textChanged(String) - Method in class org.catacomb.druid.gui.edit.DruExpandingTextArea

textChanged(String) - Method in class org.catacomb.druid.gui.edit.DruLabelledTextField

textChanged(String) - Method in class org.catacomb.druid.gui.edit.DruTextArea

textChanged(String) - Method in class org.catacomb.druid.gui.edit.DruTextField

textChanged(String) - Method in class org.catacomb.druid.swing.DFloat

textChanged(String) - Method in class org.catacomb.druid.swing.DInt

textDialogController - Static variable in class org.catacomb.druid.dialog.Dialoguer

TextDialogController - Class in org.catacomb.druid.dialog

TextDialogController() - Constructor for class org.catacomb.druid.dialog.TextDialogController

TextDisplayed - Interface in org.catacomb.interlish.structure

textEdited(String) - Method in interface org.catacomb.druid.event.TextActor

textEdited(String) - Method in class org.catacomb.druid.gui.edit.DruExpandingTextArea

textEdited(String) - Method in class org.catacomb.druid.gui.edit.DruLabelledTextField

textEdited(String) - Method in class org.catacomb.druid.gui.edit.DruTextArea

textEdited(String) - Method in class org.catacomb.druid.gui.edit.DruTextField

textEdited(String) - Method in class org.catacomb.druid.swing.DFloat

textEdited(String) - Method in class org.catacomb.druid.swing.DInt

textEntered(String) - Method in interface org.catacomb.druid.event.TextActor

textEntered(String) - Method in class org.catacomb.druid.gui.edit.DruExpandingTextArea

textEntered(String) - Method in class org.catacomb.druid.gui.edit.DruLabelledTextField

textEntered(String) - Method in class org.catacomb.druid.gui.edit.DruTextArea

textEntered(String) - Method in class org.catacomb.druid.gui.edit.DruTextField

textEntered(String) - Method in class org.catacomb.druid.swing.DFloat

textEntered(String) - Method in class org.catacomb.druid.swing.DInt

TextField - Class in org.catacomb.druid.blocks

TextField() - Constructor for class org.catacomb.druid.blocks.TextField

TextField(String) - Constructor for class org.catacomb.druid.blocks.TextField

textField - Variable in class org.catacomb.druid.gui.edit.DruDropBox

TextField - Interface in org.catacomb.interlish.structure

TextFieldDropTarget - Class in org.catacomb.druid.swing.dnd

TextFieldDropTarget(JTextField, DDropTextField) - Constructor for class org.catacomb.druid.swing.dnd.TextFieldDropTarget

TextFloat - Class in org.catacomb.druid.xtext.base

TextFloat(String, int, int, Object) - Constructor for class org.catacomb.druid.xtext.base.TextFloat

TextFloat(String, IntPosition, Object) - Constructor for class org.catacomb.druid.xtext.base.TextFloat

TextGettable - Interface in org.catacomb.interlish.structure

textLength() - Method in class org.catacomb.druid.xtext.base.NewlineBlock

textLength() - Method in class org.catacomb.druid.xtext.base.TextBlock

textLevels - Static variable in interface org.catacomb.interlish.structure.InfoMessage

textPainter - Variable in class org.catacomb.druid.swing.DTextCanvas

TextPainter - Interface in org.catacomb.interlish.structure

TextPanel - Class in org.catacomb.druid.blocks

TextPanel() - Constructor for class org.catacomb.druid.blocks.TextPanel

textSB - Variable in class org.catacomb.druid.gui.base.DruInfoPanel

TextSettable - Interface in org.catacomb.interlish.structure

TextSplitter - Class in org.catacomb.druid.xtext.parse

TextSplitter(String) - Constructor for class org.catacomb.druid.xtext.parse.TextSplitter

TextTagger - Class in org.catacomb.xdoc

TextTagger() - Constructor for class org.catacomb.xdoc.TextTagger

textToEdit(String, String) - Method in class org.catacomb.xdoc.TextTagger

textToEdit(File, File) - Method in class org.catacomb.xdoc.TextTagger

textToXML(String, String) - Method in class org.catacomb.xdoc.TextTagger

textToXML(File, File) - Method in class org.catacomb.xdoc.TextTagger

thepicture - Variable in class org.catacomb.movie.gif.NeuQuant

thingType - Variable in class org.catacomb.druid.xtext.data.XTypeStore

thread - Variable in class org.catacomb.graph.gui.HoverTimer

threadRecord(File, Logger) - Method in class org.catacomb.graph.gui.MovieDisplay

threeD - Variable in class org.catacomb.druid.blocks.DrawingCanvas

thresh - Variable in class org.catacomb.dataview.RasterRowElement

tidyLimits() - Method in class org.catacomb.datalish.Box

tidyLinkArray(NetMapLink[]) - Method in class org.catacomb.numeric.difnet.calc.OrderedNetMap

tiHM - Variable in class org.catacomb.druid.swing.DCheckboxList

tiHM - Variable in class org.catacomb.druid.swing.DCheckboxTree

time - Variable in class org.catacomb.be.Placement

time - Variable in class org.catacomb.be.TimePoint

time - Variable in class org.catacomb.datalish.SceneConfig

time() - Method in class org.catacomb.interlish.content.BasicTouchTime

time() - Static method in class org.catacomb.interlish.service.SystemTime

time() - Method in interface org.catacomb.interlish.structure.TouchTime

time - Variable in class org.catacomb.interlish.version.BuildInfo

time - Variable in class org.catacomb.numeric.data.NumDataStore

time - Variable in class org.catacomb.numeric.data.SimpleSpriteBlock

time - Variable in class org.catacomb.numeric.difnet.model.BasicNetState

time - Variable in class org.textensor.stochdiff.numeric.pool.DeterministicPoolCalc

time0 - Static variable in class org.catacomb.report.E

time0 - Static variable in class org.textensor.report.E

TimeComparable - Interface in org.catacomb.interlish.structure

TimePoint - Class in org.catacomb.be

TimePoint() - Constructor for class org.catacomb.be.TimePoint

TimePoint(double, double) - Constructor for class org.catacomb.be.TimePoint

times - Variable in class org.catacomb.numeric.data.AnimSlice

times - Variable in class org.catacomb.numeric.data.EventSequence

times - Variable in class org.catacomb.numeric.function.HoldLastScalarFunction

times(GRotation) - Method in class org.textensor.stochdiff.geom.GRotation

times(double) - Method in class org.textensor.stochdiff.numeric.math.Column

times(Matrix) - Method in class org.textensor.stochdiff.numeric.math.Matrix

times(Column) - Method in class org.textensor.stochdiff.numeric.math.Matrix

timestamp - Variable in class org.catacomb.druid.guimodel.LogEntry

timestamp - Variable in class org.catacomb.interlish.report.Message

Timestamp - Class in org.catacomb.util

Timestamp() - Constructor for class org.catacomb.util.Timestamp

timestamp() - Static method in class org.catacomb.util.Timestamp

Timestampable - Interface in org.catacomb.numeric.data

timestep - Variable in class org.catacomb.be.TimePoint

Timestep - Interface in org.catacomb.be

timeTest() - Method in class org.textensor.stochdiff.numeric.stochastic.InterpolatingStepGenerator

TimeTests - Class in org.textensor.stochdiff.numeric.stochastic

TimeTests() - Constructor for class org.textensor.stochdiff.numeric.stochastic.TimeTests

tip - Variable in class org.catacomb.druid.blocks.Panel

tip - Variable in class org.catacomb.druid.gui.base.DruPanel

title - Variable in class org.catacomb.dataview.build.DVPanel

title - Variable in class org.catacomb.druid.blocks.AutonomousDialog

title - Variable in class org.catacomb.druid.blocks.AutonomousPanel

title - Variable in class org.catacomb.druid.blocks.Dialog

title - Variable in class org.catacomb.druid.blocks.EditorWindow

title - Variable in class org.catacomb.druid.blocks.Frame

title - Variable in class org.catacomb.druid.blocks.Panel

title - Variable in class org.catacomb.druid.blocks.TableTree

title - Variable in class org.catacomb.druid.gui.base.DruPanel

title - Variable in class org.catacomb.druid.xtext.base.XTDoc

title - Variable in class org.catacomb.numeric.data.StackSlice

Titled - Interface in org.catacomb.interlish.structure

titleLabel - Variable in class org.catacomb.druid.dialog.MessageDialogController

Tmp1A - Class in org.textensor.stochdiff.numeric.tmp

Tmp1A(SDRun) - Constructor for class org.textensor.stochdiff.numeric.tmp.Tmp1A

toAbstractJavaSource() - Method in class org.catacomb.act.MethodSignature

toFront() - Method in class org.catacomb.druid.gui.base.DruAutonomousDialog

toFront() - Method in class org.catacomb.druid.gui.base.DruDialog

toFront() - Method in class org.catacomb.druid.gui.base.DruEditorWindow

toFront() - Method in class org.catacomb.druid.gui.base.DruFrame

toFront() - Method in interface org.catacomb.interlish.structure.FrameShowable

toggle() - Method in class org.catacomb.druid.swing.ToggleItem

Toggle - Interface in org.catacomb.interlish.structure

toggleAction - Variable in class org.catacomb.druid.blocks.ScrollingCheckboxList

toggleAction - Variable in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

ToggleButton - Class in org.catacomb.druid.blocks

ToggleButton() - Constructor for class org.catacomb.druid.blocks.ToggleButton

ToggleButton(String) - Constructor for class org.catacomb.druid.blocks.ToggleButton

toggleButton - Variable in class org.catacomb.druid.gui.edit.DruToggleButton

toggleHide() - Method in class org.textensor.vis.SceneGraphViewer

toggleHideShape(Shape3D) - Method in class org.textensor.vis.SceneGraphViewer

ToggleItem - Class in org.catacomb.druid.swing

ToggleItem(Object) - Constructor for class org.catacomb.druid.swing.ToggleItem

toggleItems - Variable in class org.catacomb.druid.swing.DCheckboxList

toggleItems - Variable in class org.catacomb.druid.swing.DCheckboxTree

toggleLink(WordBlock) - Method in class org.catacomb.druid.xtext.base.WordBlock

ToggleList - Class in org.catacomb.druid.blocks

ToggleList() - Constructor for class org.catacomb.druid.blocks.ToggleList

toggleRemoveSelection(TreePath) - Method in class org.catacomb.druid.swing.CheckTreeSelectionModel

toggleSelection(int) - Method in class org.catacomb.druid.swing.DCheckboxList

ToggleSelectionModel - Class in org.catacomb.druid.swing

ToggleSelectionModel() - Constructor for class org.catacomb.druid.swing.ToggleSelectionModel

toJava() - Method in class org.catacomb.act.ArrayDeclaration

toJavaDeclaration() - Method in class org.catacomb.act.EnumOption

toJavaScriptStub() - Method in class org.catacomb.act.FunctionSignature

toJavaSource(String) - Method in class org.catacomb.act.DefaultConstructor

toJavaSource() - Method in class org.catacomb.act.MethodSignature

toJavaSource(String) - Method in class org.catacomb.act.MethodSignature

toJavaSource(String) - Method in class org.catacomb.act.SuperCallConstructor

tolerance - Variable in class org.textensor.stochdiff.model.SDRun

toLin(double) - Method in class org.catacomb.druid.swing.DFloatSlider

toolbarbgcolor - Static variable in class org.catacomb.druid.swing.LAF

tooltips - Variable in class org.catacomb.druid.gui.edit.DruListPanel

tooltips - Variable in class org.catacomb.druid.swing.DList

tooltips - Variable in class org.catacomb.graph.gui.WorldCanvas

tooltipTarget - Variable in class org.catacomb.druid.gui.base.DruPanel

topArea - Variable in class org.textensor.stochdiff.numeric.morph.CuboidVolumeElement

topArea - Variable in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

topMargin - Variable in class org.catacomb.dataview.GraphMaker

topMargin - Variable in class org.catacomb.graph.gui.WorldTransform

toPrefixedCodeComment(String) - Method in class org.catacomb.act.EnumOption

toString() - Method in class org.catacomb.be.Placement

toString() - Method in class org.catacomb.be.Position

toString() - Method in class org.catacomb.datalish.Box

toString() - Method in class org.catacomb.datalish.SColor

toString() - Method in class org.catacomb.druid.build.GUIPath

toString() - Method in class org.catacomb.druid.gui.base.DruFrame

toString() - Method in class org.catacomb.druid.gui.base.DruMenuBar

toString() - Method in class org.catacomb.druid.gui.base.DruPanel

toString() - Method in class org.catacomb.druid.gui.base.DummyTree

toString() - Method in class org.catacomb.druid.gui.edit.DruButton

toString() - Method in class org.catacomb.druid.gui.edit.DruMenu

toString() - Method in class org.catacomb.druid.gui.edit.DruMenuButton

toString() - Method in class org.catacomb.druid.manifest.ClassRole

toString() - Method in class org.catacomb.druid.manifest.DecFile

toString() - Method in class org.catacomb.druid.market.HookupBoard

toString() - Method in class org.catacomb.druid.swing.DButton

toString() - Method in class org.catacomb.druid.swing.DCheckbox

toString() - Method in class org.catacomb.druid.swing.DCheckboxMenuItem

toString() - Method in class org.catacomb.druid.swing.DChoice

toString() - Method in class org.catacomb.druid.swing.DImageButton

toString() - Method in class org.catacomb.druid.swing.DMenuItem

toString() - Method in class org.catacomb.druid.swing.dnd.Region

toString() - Method in class org.catacomb.druid.swing.DToggleButton

toString() - Method in class org.catacomb.druid.swing.split.SplitterLayout

Returns a String representation of the Layout

toString() - Method in class org.catacomb.druid.swing.ToggleItem

toString() - Method in class org.catacomb.druid.util.examples.DemoNode

toString() - Method in class org.catacomb.druid.util.examples.TreeItem

toString() - Method in class org.catacomb.druid.util.tree.ArrayListNode

toString() - Method in class org.catacomb.druid.util.tree.RelationNode

toString() - Method in class org.catacomb.druid.xtext.base.DocStore

toString() - Method in class org.catacomb.druid.xtext.base.XTDoc

toString() - Method in class org.catacomb.graph.gui.DisplayStyleSet

toString() - Method in class org.catacomb.interlish.content.BasicTouchTime

toString() - Method in class org.catacomb.interlish.content.BooleanValue

toString() - Method in class org.catacomb.interlish.content.ColorTable

toString() - Method in class org.catacomb.interlish.content.ConnectionFlavor

toString() - Method in class org.catacomb.interlish.content.DoubleValue

toString() - Method in class org.catacomb.interlish.content.ExternValue

toString() - Method in class org.catacomb.interlish.content.Heading

toString() - Method in class org.catacomb.interlish.content.IntegerValue

toString() - Method in class org.catacomb.interlish.content.NVPair

toString() - Method in class org.catacomb.interlish.content.QuantifiedListValue

toString() - Method in class org.catacomb.interlish.content.StringValue

toString() - Method in class org.catacomb.interlish.report.Message

toString() - Method in class org.catacomb.numeric.data.BlockStack

toString() - Method in class org.catacomb.numeric.data.DDSubSlice

toString() - Method in class org.catacomb.numeric.data.DVector

toString() - Method in class org.catacomb.numeric.data.NumDataSet

toString() - Method in class org.catacomb.numeric.data.NumDataStore

toString() - Method in class org.catacomb.numeric.data.StackSlice

toString() - Method in class org.catacomb.numeric.difnet.CellPoint

toString(double[]) - Static method in class org.catacomb.report.E

toString() - Method in class org.catacomb.serial.om.OmElement

toString() - Method in class org.catacomb.serial.xml.XMLToken

toString() - Method in class org.catacomb.util.StringTree

toString() - Method in class org.catacomb.util.StringTreeLeaf

toString() - Method in class org.catacomb.util.WSString

toString() - Method in class org.textensor.stochdiff.geom.GPosition

toString() - Method in class org.textensor.stochdiff.geom.GVector

toString() - Method in class org.textensor.stochdiff.numeric.morph.TreePoint

toString() - Method in class org.textensor.vis.IcingPoint

toString() - Method in class org.textensor.xml.XMLToken

toTreePoint() - Method in class org.textensor.stochdiff.model.MorphPoint

touch() - Method in class org.catacomb.druid.xtext.base.Guise

Touchable - Interface in org.catacomb.interlish.structure

touchedAt - Variable in class org.catacomb.interlish.content.BasicTouchTime

touchTime - Variable in class org.catacomb.druid.xtext.base.Guise

touchTime - Variable in class org.catacomb.graph.drawing.IconImage

touchTime - Variable in class org.catacomb.graph.drawing.VectorIcon

touchTime - Variable in class org.catacomb.interlish.content.DocumentedComponent

touchTime - Variable in class org.catacomb.interlish.content.PrimitiveValue

TouchTime - Interface in org.catacomb.interlish.structure

touchTime - Variable in class org.catacomb.numeric.data.DDSubSlice

TouchTimed - Interface in org.catacomb.interlish.structure

TRACE - Static variable in class org.catacomb.graph.arbor.SegmentGraphVE

transferable - Variable in class org.catacomb.druid.swing.DTreeDragSource

transferConnections() - Method in class org.textensor.stochdiff.model.MorphPoint

transIndex - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

Transitional - Interface in org.catacomb.interlish.structure

Transitional - Interface in org.textensor.stochdiff.inter

translate(Position) - Method in class org.catacomb.interlish.content.Polypoint

translate(Translation) - Method in class org.textensor.stochdiff.numeric.morph.TrianglesSet

translate(Translation) - Method in class org.textensor.stochdiff.numeric.morph.TriangleStrip

translatedRotatedPoint(Position, Position, Heading) - Static method in class org.catacomb.geom.Geom

translatedRotatedPoints(Position[], Position, Heading) - Static method in class org.catacomb.geom.Geom

translatedRotatedPoints(Position[], Position, Heading, Position) - Static method in class org.catacomb.geom.Geom

translation(Position) - Static method in class org.textensor.stochdiff.geom.Geom

Translation - Interface in org.textensor.stochdiff.geom

transparent - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

transpose() - Method in class org.catacomb.numeric.math.Matrix

transpose(double[][]) - Static method in class org.catacomb.numeric.math.SMatrix

transpose() - Method in class org.textensor.stochdiff.numeric.math.Matrix

TrashBoard - Class in org.catacomb.druid.xtext.edit

TrashBoard(DTextCanvas) - Constructor for class org.catacomb.druid.xtext.edit.TrashBoard

trashPressed() - Method in class org.catacomb.graph.arbor.SegmentGraphVE

trashPressed() - Method in interface org.catacomb.graph.gui.PickListener

trashPressed() - Method in class org.catacomb.graph.gui.ZoneDemo

trawl(Related) - Static method in class org.catacomb.druid.util.tree.Trawler

trawlChildren(SingleParent) - Static method in class org.catacomb.druid.util.tree.Trawler

Trawler - Class in org.catacomb.druid.util.tree

Trawler() - Constructor for class org.catacomb.druid.util.tree.Trawler

tree - Variable in class org.catacomb.druid.build.TreeController

tree - Variable in class org.catacomb.druid.gui.edit.DruCheckboxTreePanel

tree - Variable in class org.catacomb.druid.gui.edit.DruTreePanel

tree - Variable in class org.catacomb.druid.swing.DTreeModel

TREE - Static variable in class org.catacomb.graph.arbor.SegmentGraphVE

Tree - Interface in org.catacomb.interlish.structure

TREE_PATH_FLAVOR - Static variable in class org.catacomb.druid.swing.dnd.DdndTransferable

TreeBoard - Class in org.catacomb.druid.market

TreeBoard() - Constructor for class org.catacomb.druid.market.TreeBoard

TreeBoxDiscretizer - Class in org.textensor.stochdiff.disc

TreeBoxDiscretizer(TreePoint[]) - Constructor for class org.textensor.stochdiff.disc.TreeBoxDiscretizer

TreeChangeReporter - Interface in org.catacomb.interlish.structure

TreeController - Class in org.catacomb.druid.build

TreeController() - Constructor for class org.catacomb.druid.build.TreeController

TreeCurvedElementDiscretizer - Class in org.textensor.stochdiff.disc

TreeCurvedElementDiscretizer(TreePoint[]) - Constructor for class org.textensor.stochdiff.disc.TreeCurvedElementDiscretizer

TreeDemo - Class in org.catacomb.druid.util.examples

TreeDemo() - Constructor for class org.catacomb.druid.util.examples.TreeDemo

treeDisplay - Variable in class org.catacomb.druid.build.TreeController

TreeDisplay - Interface in org.catacomb.interlish.structure

treeExp - Variable in class org.catacomb.druid.xtext.base.DocStore

TreeExplorer - Interface in org.catacomb.interlish.structure

treeify(ArrayList<RelationNode>, ArrayList<RelationNode>, String) - Method in class org.catacomb.druid.util.tree.RelationTree

treeify(String[], String) - Static method in class org.catacomb.util.StringUtil

TreeItem - Class in org.catacomb.druid.util.examples

TreeItem(String) - Constructor for class org.catacomb.druid.util.examples.TreeItem

treeModelListeners - Variable in class org.catacomb.druid.swing.DTreeModel

treeModified() - Method in class org.catacomb.druid.build.TreeController

treeModified() - Method in class org.catacomb.druid.gui.edit.DruTreePanel

treeModified() - Method in class org.catacomb.druid.swing.DTree

treeModified() - Method in class org.catacomb.druid.swing.DTreeModel

treeModified() - Method in interface org.catacomb.interlish.structure.TreeDisplay

TreeNode - Interface in org.catacomb.interlish.structure

TreePanel - Class in org.catacomb.druid.blocks

TreePanel() - Constructor for class org.catacomb.druid.blocks.TreePanel

TreePoint - Class in org.textensor.stochdiff.numeric.morph

TreePoint() - Constructor for class org.textensor.stochdiff.numeric.morph.TreePoint

TreePoint(double, double, double, double) - Constructor for class org.textensor.stochdiff.numeric.morph.TreePoint

treeProvider - Variable in class org.catacomb.druid.gui.edit.DruTreePanel

TreeProvider - Interface in org.catacomb.interlish.structure

TreeRoot - Interface in org.catacomb.interlish.structure

TreeSelectionBoard - Class in org.catacomb.druid.market

TreeSelectionBoard() - Constructor for class org.catacomb.druid.market.TreeSelectionBoard

TreeUtil - Class in org.textensor.stochdiff.disc

TreeUtil() - Constructor for class org.textensor.stochdiff.disc.TreeUtil

TreeWriter - Class in org.textensor.stochdiff.numeric.morph

TreeWriter(TreePoint[]) - Constructor for class org.textensor.stochdiff.numeric.morph.TreeWriter

trialPan(int, int, int, int) - Method in class org.catacomb.graph.gui.Mouse

trialPan(int, int, int, int) - Method in class org.catacomb.graph.gui.WorldCanvas

trialPan(int, int, int, int) - Method in class org.catacomb.graph.gui.WorldTransform

trialPanning - Variable in class org.catacomb.graph.gui.WorldTransform

Triangle - Class in org.catacomb.graph.drawing

Triangle() - Constructor for class org.catacomb.graph.drawing.Triangle

Triangle(double, double, double, double, double, double) - Constructor for class org.catacomb.graph.drawing.Triangle

TrianglesSet - Class in org.textensor.stochdiff.numeric.morph

TrianglesSet() - Constructor for class org.textensor.stochdiff.numeric.morph.TrianglesSet

TriangleStrip - Class in org.textensor.stochdiff.numeric.morph

TriangleStrip() - Constructor for class org.textensor.stochdiff.numeric.morph.TriangleStrip

trim() - Method in class org.catacomb.movie.gif.ByteAccumulator

trim(double, int) - Static method in class org.catacomb.util.Formatter

trimPointArray() - Method in class org.catacomb.numeric.mesh.DifMeshBuilder

TristateCheckBox - Class in org.catacomb.druid.swing

Maintenance tip - There were some tricks to getting this code working: 1.

TristateCheckBox(String, Icon, TristateCheckBox.State) - Constructor for class org.catacomb.druid.swing.TristateCheckBox

TristateCheckBox(String, TristateCheckBox.State) - Constructor for class org.catacomb.druid.swing.TristateCheckBox

TristateCheckBox(String) - Constructor for class org.catacomb.druid.swing.TristateCheckBox

TristateCheckBox() - Constructor for class org.catacomb.druid.swing.TristateCheckBox

TristateCheckBox.State - Class in org.catacomb.druid.swing

This is a type-safe enumerated type

TristateCheckBox.State() - Constructor for class org.catacomb.druid.swing.TristateCheckBox.State

TristateCheckBox.TristateDecorator - Class in org.catacomb.druid.swing

Exactly which Design Pattern is this? Is it an Adapter, a Proxy or a Decorator? In this case, my vote lies with the Decorator, because we are extending functionality and "decorating" the original model with a more powerful model.

TristateCheckBox.TristateDecorator(ButtonModel) - Constructor for class org.catacomb.druid.swing.TristateCheckBox.TristateDecorator

tryHighlight(SegmentGraphPoint) - Method in class org.catacomb.graph.arbor.SegmentGraphVE

tstfield - Variable in class org.catacomb.act.CaseRelayBody

turn(double) - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

turn(double) - Method in class org.catacomb.graph.gui.DrawingCanvas

TURN - Static variable in class org.catacomb.graph.gui.WorldCanvas

turn(double) - Method in class org.catacomb.graph.gui.WorldCanvas

TurntableHandler - Class in org.catacomb.graph.gui

TurntableHandler() - Constructor for class org.catacomb.graph.gui.TurntableHandler

turntableHandler - Variable in class org.catacomb.graph.gui.WorldCanvas

TurnZoomHandler - Class in org.catacomb.graph.gui

TurnZoomHandler() - Constructor for class org.catacomb.graph.gui.TurnZoomHandler

turnZoomHandler - Variable in class org.catacomb.graph.gui.WorldCanvas

twrcTrans - Variable in class org.textensor.vis.SceneGraphViewer

twTrans - Variable in class org.textensor.vis.SceneGraphViewer

txt - Variable in class org.catacomb.dataview.StringPlotElement

txtHeight - Variable in class org.catacomb.druid.swing.DTextCanvas

type - Variable in class org.catacomb.act.ArrayDeclaration

type - Variable in class org.catacomb.act.FieldSignature

type - Variable in class org.catacomb.act.FunctionSignature

type - Variable in class org.catacomb.act.MethodSignature

type - Variable in class org.catacomb.be.ChangeEvent

type - Variable in class org.catacomb.be.StructElement

type - Variable in class org.catacomb.druid.blocks.TableTree

type - Variable in class org.catacomb.druid.swing.DPopLabel

type - Variable in class org.catacomb.druid.xtext.base.TextBlock

type - Variable in class org.catacomb.druid.xtext.data.XItem

type - Variable in class org.catacomb.druid.xtext.data.XRelation

type - Variable in class org.catacomb.graph.drawing.ShapePoint

type - Variable in class org.catacomb.interlish.structure.Relationship

type - Variable in class org.catacomb.serial.xml.XMLToken

type - Variable in class org.textensor.xml.XMLToken

TYPE_STATE - Static variable in interface org.catacomb.interlish.service.ScriptSource

TYPE_STRUCTURE - Static variable in interface org.catacomb.interlish.service.ScriptSource

typeArchive - Variable in class org.catacomb.serial.state.ModelState

TypeArchive - Class in org.catacomb.serial.state

TypeArchive() - Constructor for class org.catacomb.serial.state.TypeArchive

TypeClass - Class in org.catacomb.serial.state

TypeClass(String, String, int) - Constructor for class org.catacomb.serial.state.TypeClass

typeClasses - Variable in class org.catacomb.serial.state.TypeArchive

typeHM - Variable in class org.catacomb.druid.xtext.data.XTypeStore

TypeInstance - Class in org.catacomb.serial.state

TypeInstance(String) - Constructor for class org.catacomb.serial.state.TypeInstance

typeInstantiator - Variable in class org.catacomb.interlish.service.ScriptManager

typeName - Variable in class org.catacomb.interlish.reflect.ObjectAccessor

types - Variable in class org.catacomb.dataview.read.ResourceImporter

types - Variable in class org.catacomb.druid.util.tree.RelationNode

types - Variable in class org.catacomb.druid.xtext.data.XTypeStore

types - Variable in class org.catacomb.serial.xml.XMLToken

types - Variable in class org.textensor.xml.XMLToken

typeStore - Variable in class org.catacomb.druid.xtext.edit.TrashBoard

typeStore - Variable in class org.catacomb.druid.xtext.edit.XRelationTree

typeStore - Variable in class org.catacomb.druid.xtext.edit.XTypeTree

typeType - Variable in class org.catacomb.druid.xtext.data.XTypeStore

U

U - Class in org.catacomb.interlish.lang

U() - Constructor for class org.catacomb.interlish.lang.U

UIColors - Class in org.catacomb.druid.gui.base

UIColors() - Constructor for class org.catacomb.druid.gui.base.UIColors

umark - Variable in class org.catacomb.numeric.difnet.CellPoint

UnaryPredicate - Interface in org.catacomb.util

unbiasnet() - Method in class org.catacomb.movie.gif.NeuQuant

uncollapse() - Method in class org.catacomb.druid.gui.edit.DruExpandingTextArea

UNDECIDED - Static variable in class org.catacomb.graph.gui.MouseHandler

underline() - Method in class org.catacomb.druid.xtext.base.Guise

undiscarded - Variable in class org.catacomb.util.Diff.file_data

Vector, like the previous one except that the elements for discarded lines have been squeezed out.

unecho(Region) - Method in class org.catacomb.druid.swing.dnd.ClickableRegionStore

unecho(Region) - Method in class org.catacomb.druid.swing.dnd.RegionBoard

unHighlight() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

UNIFORM - Static variable in class org.textensor.vis.IcingPoint

uniform() - Method in class org.textensor.vis.IcingPoint

uniformRV() - Static method in class org.catacomb.numeric.math.Random

uniformRV() - Static method in class org.textensor.stochdiff.numeric.math.NRRandom

uninstallDefaults() - Method in class org.catacomb.druid.swing.DSplitPaneUI

uninstallDefaults() - Method in class org.catacomb.graph.gui.AboveBelowSplitAxisPanelUI

uninstallDefaults() - Method in class org.catacomb.graph.gui.AboveBelowSplitPanelUI

uninstallDefaults() - Method in class org.catacomb.graph.gui.LeftRightSplitPanelUI

uninstallUI(JComponent) - Method in class org.catacomb.druid.swing.ui.DruidTreeUI

unique - Variable in class org.catacomb.druid.build.GUIPath

unit - Variable in class org.catacomb.numeric.data.StackSlice

unitBox() - Static method in class org.catacomb.graph.drawing.SegmentLine

Units - Class in org.catacomb.numeric.phys

Units() - Constructor for class org.catacomb.numeric.phys.Units

unitX() - Static method in class org.textensor.stochdiff.geom.Geom

unitY() - Static method in class org.textensor.stochdiff.geom.Geom

unitZ() - Static method in class org.textensor.stochdiff.geom.Geom

universe - Variable in class org.textensor.vis.SceneGraphViewer

UNKNOWN - Static variable in interface org.catacomb.act.BlockSignature

UNKNOWN - Static variable in class org.catacomb.druid.swing.DFrame

UNKNOWN - Static variable in class org.catacomb.interlish.reflect.ObjectBuilder

UNKNOWN - Static variable in interface org.catacomb.interlish.structure.InfoMessage

unMark() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

unpackJar(File, File) - Static method in class org.catacomb.interlish.util.JUtil

unselect() - Method in class org.catacomb.druid.gui.edit.DruChoice

unselect() - Method in class org.catacomb.druid.gui.edit.DruRadioButtons

unselect() - Method in interface org.catacomb.interlish.structure.Choice

unstoredValueChange(boolean) - Method in class org.catacomb.druid.gui.edit.DruGCPanel

upBlock - Variable in class org.catacomb.druid.xtext.base.ContainerBlock

UpBlock - Class in org.catacomb.druid.xtext.base

UpBlock(ContainerBlock) - Constructor for class org.catacomb.druid.xtext.base.UpBlock

upButton - Variable in class org.catacomb.druid.gui.edit.DruExpandingTextArea

updatable - Variable in class org.catacomb.druid.swing.DChoice

Updatable - Interface in org.catacomb.interlish.structure

update() - Method in class org.catacomb.druid.gui.edit.DruProgressReport

update(Graphics) - Method in class org.catacomb.druid.swing.split.DSplitterBar

Called by AWT to update the image produced by the JSplitterBar

update(double[], double[], String, Color) - Method in class org.catacomb.graph.gui.Labellee

update(Graphics) - Method in class org.catacomb.icon.splash.SplashWindow

update() - Method in class org.catacomb.interlish.report.PrintProgressReport

update(Object) - Method in interface org.catacomb.interlish.structure.Observer

update() - Method in interface org.catacomb.interlish.structure.ProgressReport

update(int) - Method in interface org.catacomb.interlish.structure.Updatable

updateCache() - Method in class org.catacomb.druid.xtext.base.Guise

updateCanvasDimensions() - Method in class org.catacomb.graph.gui.Mouse

updateDisplay() - Method in class org.catacomb.druid.gui.edit.DruCheckboxListPanel

updateDisplay() - Method in class org.catacomb.druid.gui.edit.DruListPanel

updateDisplay() - Method in class org.catacomb.druid.gui.edit.DruToggleListPanel

updateDisplay() - Method in interface org.catacomb.druid.util.Display

updateDisplay() - Method in interface org.catacomb.druid.util.TaskProgressDisplay

updateDisplays() - Method in class org.catacomb.dataview.DataviewController

updateLabellee(int, Labellee) - Method in class org.catacomb.graph.gui.Labeller

updateOptions() - Method in class org.catacomb.druid.gui.edit.DruChoice

updateOptions() - Method in class org.catacomb.druid.swing.DValueHistory

updatePickable - Variable in class org.catacomb.graph.drawing.Shape

updateProtoPosition() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

updateProtos() - Method in class org.catacomb.graph.arbor.SegmentGraphPoint

Updater - Interface in org.catacomb.interlish.structure

updateThread - Variable in class org.catacomb.druid.gui.edit.DruLogPanel

updateTree() - Method in class org.catacomb.druid.xtext.base.DocStore

UpDownSplitPanel - Class in org.catacomb.druid.blocks

UpDownSplitPanel() - Constructor for class org.catacomb.druid.blocks.UpDownSplitPanel

upLink - Variable in class org.catacomb.numeric.difnet.calc.NetMapNode

UPPER_MASK - Static variable in class org.textensor.stochdiff.numeric.math.MersenneTwister

upToDate() - Method in class org.catacomb.numeric.data.StackSlice

upTransform - Variable in class org.catacomb.graph.gui.Painter

upTransform - Variable in class org.catacomb.graph.gui.YAxisCanvas

URLImportContext - Class in org.catacomb.dataview.read

URLImportContext(URL) - Constructor for class org.catacomb.dataview.read.URLImportContext

useBinomial() - Method in class org.textensor.stochdiff.numeric.BaseCalc

usedBy(Value, Object) - Method in class org.catacomb.druid.gui.edit.DruLabelledTextField

usedBy(Value, Object) - Method in interface org.catacomb.interlish.structure.UseWatcher

usedEntry - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

useIntrinsics - Variable in class org.catacomb.numeric.difnet.calc.OrderedNetMap

useIntrinsics() - Method in class org.catacomb.numeric.difnet.model.BasicNetState

useIntrinsics() - Method in interface org.catacomb.numeric.difnet.NetState

usePoisson() - Method in class org.textensor.stochdiff.numeric.BaseCalc

USER_SOURCE - Static variable in interface org.catacomb.act.BlockSignature

USER_SOURCE - Static variable in class org.catacomb.act.MethodSignature

userAccessible - Variable in class org.catacomb.act.MethodSignature

userAntialias - Variable in class org.catacomb.graph.gui.WorldCanvas

UserLog - Class in org.catacomb.interlish.report

UserLog() - Constructor for class org.catacomb.interlish.report.UserLog

useStringArray(String[], String) - Method in interface org.catacomb.druid.event.StringArrayUser

UseWatcher - Interface in org.catacomb.interlish.structure

useWatchers - Variable in class org.catacomb.interlish.content.PrimitiveValue

V

val - Variable in class org.catacomb.druid.xtext.data.XItem

valid - Variable in class org.catacomb.be.Position

validate() - Method in class org.catacomb.druid.gui.base.DruPanel

vals - Variable in class org.catacomb.act.ArrayDeclaration

vals - Variable in class org.catacomb.dataview.RasterRowElement

value - Variable in class org.catacomb.act.EnumOption

value - Variable in class org.catacomb.druid.blocks.FillGuage

value - Variable in class org.catacomb.druid.blocks.Option

value - Variable in class org.catacomb.druid.blocks.ToggleButton

value - Variable in class org.catacomb.druid.gui.edit.DruToggleButton

value - Variable in class org.catacomb.druid.swing.DFloat

value - Variable in class org.catacomb.druid.swing.DFloatSlider

value - Variable in class org.catacomb.druid.swing.DInt

value - Variable in class org.catacomb.interlish.content.NVPair

value - Variable in class org.catacomb.interlish.resource.Role

Value - Interface in org.catacomb.interlish.structure

value - Variable in class org.catacomb.numeric.data.FloatRow

value - Variable in class org.catacomb.numeric.data.FloatScalar

value - Variable in class org.catacomb.numeric.data.FloatVector

value - Variable in class org.catacomb.numeric.difnet.calc.NetMapNode

value - Variable in class org.catacomb.numeric.difnet.model.BasicStateNode

VALUE - Static variable in interface org.catacomb.numeric.difnet.Stimulus

value - Variable in class org.catacomb.numeric.function.FixedValueScalarFunction

value - Variable in class org.catacomb.serial.om.OmAttribute

value - Variable in class org.catacomb.serial.quickxml.Element

value - Variable in class org.catacomb.serial.state.FieldState

value - Variable in class org.catacomb.serial.xml.NamedString

value - Variable in class org.catacomb.serial.xml.NVPair

value - Variable in class org.catacomb.util.ColorDef

value - Variable in class org.textensor.stochdiff.model.MaxAspectRatio

value - Variable in class org.textensor.stochdiff.model.MaxElementSide

value - Variable in class org.textensor.stochdiff.model.NanoMolarity

value - Variable in class org.textensor.stochdiff.model.PicoSD

value - Variable in class org.textensor.stochdiff.neuroml.meta

value - Variable in class org.textensor.stochdiff.neuroml.MetaItem

value - Variable in class org.textensor.xml.Attribute

valueChange(String) - Method in class org.catacomb.druid.gui.edit.DruGCPanel

valueChange(boolean) - Method in class org.catacomb.druid.gui.edit.DruGCPanel

valueChange(double) - Method in class org.catacomb.druid.gui.edit.DruGCPanel

valueChange(int) - Method in class org.catacomb.druid.gui.edit.DruGCPanel

valueChange(Object) - Method in class org.catacomb.druid.gui.edit.DruGCPanel

valueChanged(ListSelectionEvent) - Method in class org.catacomb.druid.swing.DCheckboxList

valueChanged(TreeSelectionEvent) - Method in class org.catacomb.druid.swing.DCheckboxTree

valueChanged(ListSelectionEvent) - Method in class org.catacomb.druid.swing.DList

valueChanged(TreeSelectionEvent) - Method in class org.catacomb.druid.swing.DTree

valueChanged() - Method in class org.catacomb.interlish.content.PrimitiveValue

valueChangedBy(Value, Object) - Method in class org.catacomb.dataview.gui.Mesh2plusTimeController

valueChangedBy(Value, Object) - Method in class org.catacomb.druid.gui.base.DruScrollingHTMLPanel

valueChangedBy(Value, Object) - Method in class org.catacomb.druid.gui.edit.DruCheckbox

valueChangedBy(Value, Object) - Method in class org.catacomb.druid.gui.edit.DruChoice

valueChangedBy(Value, Object) - Method in class org.catacomb.druid.gui.edit.DruColorChoice

valueChangedBy(Value, Object) - Method in class org.catacomb.druid.gui.edit.DruExpandingTextArea

valueChangedBy(Value, Object) - Method in class org.catacomb.druid.gui.edit.DruFloat

valueChangedBy(Value, Object) - Method in class org.catacomb.druid.gui.edit.DruHTMLPanel

valueChangedBy(Value, Object) - Method in class org.catacomb.druid.gui.edit.DruInt

valueChangedBy(Value, Object) - Method in class org.catacomb.druid.gui.edit.DruLabelledTextField

valueChangedBy(Value, Object) - Method in class org.catacomb.druid.gui.edit.DruRadioButtons

valueChangedBy(Value, Object) - Method in class org.catacomb.druid.gui.edit.DruTextArea

valueChangedBy(Value, Object) - Method in class org.catacomb.druid.gui.edit.DruTextField

valueChangedBy(Value, Object) - Method in interface org.catacomb.interlish.structure.ValueWatcher

valueForPathChanged(TreePath, Object) - Method in class org.catacomb.druid.swing.DTreeModel

valueOf(String) - Static method in enum org.catacomb.datalish.ColorNames

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.textensor.stochdiff.numeric.BaseCalc.algorithm_t

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.textensor.stochdiff.numeric.BaseCalc.distribution_t

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.textensor.stochdiff.SDCalcType

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.catacomb.datalish.ColorNames

Returns an array containing the constants of this enum type, in the order they are declared.

values - Variable in class org.catacomb.druid.swing.DSlider

values - Variable in class org.catacomb.druid.swing.DValueHistory

values - Variable in class org.catacomb.numeric.function.HoldLastScalarFunction

values - Variable in class org.textensor.stochdiff.model.SurfaceLayers

values() - Static method in enum org.textensor.stochdiff.numeric.BaseCalc.algorithm_t

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.textensor.stochdiff.numeric.BaseCalc.distribution_t

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.textensor.stochdiff.SDCalcType

Returns an array containing the constants of this enum type, in the order they are declared.

ValueWatcher - Interface in org.catacomb.interlish.structure

variableList - Variable in class org.catacomb.dataview.gui.Mesh2plusTimeController

VariableSizeCardPanel - Class in org.catacomb.druid.blocks

VariableSizeCardPanel() - Constructor for class org.catacomb.druid.blocks.VariableSizeCardPanel

varIdx - Variable in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

varidx(String) - Method in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

vbl - Variable in class org.catacomb.graph.gui.BoxSelectionHandler

vbr - Variable in class org.catacomb.graph.gui.BoxSelectionHandler

vec - Variable in class org.textensor.stochdiff.geom.GTranslation

vecArrayHM - Variable in class org.catacomb.numeric.data.NumDataStore

vecHM - Variable in class org.catacomb.numeric.data.NumDataStore

VECTOR - Static variable in class org.catacomb.numeric.data.DataSlice

vector(double, double, double) - Static method in class org.textensor.stochdiff.geom.Geom

Vector - Interface in org.textensor.stochdiff.geom

VectorConstructor - Class in org.catacomb.serial.xml

VectorConstructor() - Constructor for class org.catacomb.serial.xml.VectorConstructor

VectorIcon - Class in org.catacomb.graph.drawing

VectorIcon() - Constructor for class org.catacomb.graph.drawing.VectorIcon

VectorIconable - Interface in org.catacomb.graph.drawing

VectorIconAdopter - Interface in org.catacomb.graph.drawing

VectorIconed - Interface in org.catacomb.graph.drawing

vectorScale(int[], double) - Static method in class org.catacomb.numeric.math.NetMath

VectorScene - Interface in org.catacomb.interlish.content

VectorSet - Class in org.catacomb.numeric.data

VectorSet() - Constructor for class org.catacomb.numeric.data.VectorSet

VectorSprite - Interface in org.catacomb.interlish.content

vectorValue - Variable in class org.catacomb.numeric.data.DataSlice

versionNumber - Variable in class org.catacomb.druid.blocks.Application

VERT_CURSOR - Static variable in class org.catacomb.druid.swing.split.DSplitterBar

vertical - Variable in class org.catacomb.druid.blocks.ScrollPanel

VERTICAL - Static variable in class org.catacomb.druid.gui.base.DruBoxPanel

VERTICAL - Static variable in class org.catacomb.druid.gui.base.DruFloatBoxPanel

VERTICAL - Static variable in class org.catacomb.druid.gui.base.DruMultiSplitPanel

VERTICAL - Static variable in class org.catacomb.druid.swing.DBoxPanel

vertical - Variable in class org.catacomb.druid.swing.DRadioButtons

VERTICAL - Static variable in class org.catacomb.druid.swing.split.SplitterLayout

VerticalAxisGraphDivider - Class in org.catacomb.graph.gui

VerticalAxisGraphDivider(BasicSplitPaneUI, AboveBelowSplitPanel, GraphColors) - Constructor for class org.catacomb.graph.gui.VerticalAxisGraphDivider

VerticalBoxPanel - Class in org.catacomb.druid.blocks

VerticalBoxPanel() - Constructor for class org.catacomb.druid.blocks.VerticalBoxPanel

VerticalMultiSplitPanel - Class in org.catacomb.druid.blocks

VerticalMultiSplitPanel() - Constructor for class org.catacomb.druid.blocks.VerticalMultiSplitPanel

verts - Variable in class org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

verts - Variable in class org.textensor.vis.VolElt

VERYDARKGRAY - Static variable in class org.catacomb.numeric.phys.Phys

verySlightlyBrighter(Color) - Static method in class org.catacomb.util.ColorUtil

verySlightlyDarker(Color) - Static method in class org.catacomb.util.ColorUtil

vgrid - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

vgrid - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

vgrid - Variable in class org.textensor.stochdiff.numeric.StaticCalc

vgrid - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

View - Class in org.catacomb.dataview.model

View() - Constructor for class org.catacomb.dataview.model.View

VIEW - Static variable in class org.catacomb.graph.arbor.SegmentGraphVE

view - Variable in class org.textensor.vis.SceneGraphViewer

viewAction(String) - Method in class org.catacomb.graph.gui.WorldCanvas

viewChanged() - Method in class org.catacomb.druid.gui.base.DruDataDisplay

viewChanged() - Method in class org.catacomb.druid.gui.base.DruDrawingCanvas

viewChanged() - Method in class org.catacomb.druid.gui.base.DruMovieDisplay

viewChanged() - Method in class org.catacomb.graph.gui.DataDisplay

viewChanged() - Method in class org.catacomb.graph.gui.DrawingCanvas

viewChanged() - Method in class org.catacomb.graph.gui.MovieDisplay

viewChanged() - Method in interface org.catacomb.interlish.structure.Presenter

ViewConfig - Class in org.catacomb.dataview.display

ViewConfig(String, double[]) - Constructor for class org.catacomb.dataview.display.ViewConfig

viewConfigs - Variable in class org.catacomb.dataview.gui.DViewController

vieweeChanged() - Method in interface org.catacomb.interlish.structure.ObjectViewer

Viewer - Interface in org.catacomb.interlish.structure

viewer - Variable in class org.textensor.vis.CCViz3D

viewer - Variable in class org.textensor.vis.RunBuilder

viewer - Variable in class org.textensor.vis.RunDecorator

viewers - Variable in class org.catacomb.druid.market.ProducerConsumerBoard

viewHM - Variable in class org.catacomb.dataview.formats.PolyLineHandler

viewMenu - Variable in class org.catacomb.dataview.gui.CCVizController

viewMenu - Variable in class org.catacomb.dataview.gui.DViewController

viewOptions - Variable in class org.catacomb.dataview.formats.PolyLineHandler

viewOptions - Static variable in class org.catacomb.dataview.formats.SWCDisplay

views - Variable in class org.catacomb.dataview.formats.PolyLineHandler

views - Variable in class org.catacomb.dataview.model.LineGraph

views - Variable in class org.catacomb.graph.gui.ViewSet

ViewSet - Class in org.catacomb.graph.gui

ViewSet() - Constructor for class org.catacomb.graph.gui.ViewSet

ViewSet(String) - Constructor for class org.catacomb.graph.gui.ViewSet

viewSets - Variable in class org.catacomb.graph.gui.DataViewStore

viewStyle - Variable in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

viewStyle - Variable in class org.catacomb.dataview.formats.SWCDisplay

visibility - Variable in class org.catacomb.act.MethodStub

visible - Variable in class org.catacomb.act.FieldSignature

Visible - Interface in org.catacomb.interlish.structure

visible3D(double, double, double) - Method in class org.catacomb.graph.gui.Painter

visible3D(double, double, double) - Method in class org.catacomb.graph.gui.WorldTransform

visibles - Variable in class org.catacomb.druid.market.ProducerConsumerBoard

VisibleState - Interface in org.catacomb.interlish.structure

visit(ThreadGroup, int) - Static method in class org.catacomb.dataview.Plotter

VISUALIZE - Static variable in class org.textensor.stochdiff.numeric.BaseCalc

Visualizer - Interface in org.textensor.vis

vmax - Variable in class org.catacomb.dataview.RasterRowElement

vmin - Variable in class org.catacomb.dataview.RasterRowElement

vnStrip(float[], float[], int, int, double, double, double, double, double, double, double, double, double[][], double[][]) - Method in class org.textensor.vis.SceneGraphBuilder

VolElt - Class in org.textensor.vis

VolElt(int[], float[], float[]) - Constructor for class org.textensor.vis.VolElt

vols - Variable in class org.textensor.stochdiff.reduce.Reducer

volume - Variable in class org.textensor.stochdiff.numeric.morph.VolumeElement

VolumeElement - Class in org.textensor.stochdiff.numeric.morph

VolumeElement() - Constructor for class org.textensor.stochdiff.numeric.morph.VolumeElement

volumeGrid - Variable in class org.textensor.stochdiff.numeric.BaseCalc

VolumeGrid - Class in org.textensor.stochdiff.numeric.morph

VolumeGrid() - Constructor for class org.textensor.stochdiff.numeric.morph.VolumeGrid

VolumeLine - Class in org.textensor.stochdiff.numeric.morph

VolumeLine(int, int, double[], double, double) - Constructor for class org.textensor.stochdiff.numeric.morph.VolumeLine

volumes - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

volumes - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

volumes - Variable in class org.textensor.stochdiff.numeric.morph.VolumeGrid

volumes - Variable in class org.textensor.stochdiff.numeric.StaticCalc

volumes - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

VolumeSlice - Class in org.textensor.stochdiff.numeric.morph

VolumeSlice(double, double) - Constructor for class org.textensor.stochdiff.numeric.morph.VolumeSlice

VolumeTest - Class in org.textensor.stochdiff.examples.volume

VolumeTest() - Constructor for class org.textensor.stochdiff.examples.volume.VolumeTest

vtl - Variable in class org.catacomb.graph.gui.BoxSelectionHandler

vtr - Variable in class org.catacomb.graph.gui.BoxSelectionHandler

vtype - Variable in class org.catacomb.act.FieldSignature

vx - Variable in class org.catacomb.be.Direction

vxmax - Variable in class org.catacomb.graph.gui.WorldTransform

vxmin - Variable in class org.catacomb.graph.gui.WorldTransform

vy - Variable in class org.catacomb.be.Direction

vymax - Variable in class org.catacomb.graph.gui.WorldTransform

vymin - Variable in class org.catacomb.graph.gui.WorldTransform

W

w - Variable in class org.catacomb.druid.swing.DScrollPane

w - Variable in class org.catacomb.graph.gui.Size

w2cx - Variable in class org.catacomb.graph.gui.WorldTransform

w2cy - Variable in class org.catacomb.graph.gui.WorldTransform

w2cz - Variable in class org.catacomb.graph.gui.WorldTransform

w3cx - Variable in class org.catacomb.graph.gui.WorldTransform

w3cy - Variable in class org.catacomb.graph.gui.WorldTransform

w3cz - Variable in class org.catacomb.graph.gui.WorldTransform

waitCursor() - Method in class org.catacomb.druid.gui.base.DruFrame

wall - Variable in class org.catacomb.numeric.data.SimpleSpriteBlock

WARNING - Static variable in interface org.catacomb.interlish.structure.InfoMessage

WARNING - Static variable in class org.catacomb.report.E

warning(String) - Static method in class org.catacomb.report.E

warning(String) - Static method in class org.textensor.report.E

warningMsg(String, String) - Static method in class org.catacomb.druid.guimodel.Log

warnOnce(String) - Static method in class org.catacomb.report.E

watchers - Variable in class org.catacomb.interlish.content.PrimitiveValue

wBar - Variable in class org.catacomb.druid.swing.split.DSplitterBar

wcdown - Variable in class org.textensor.vis.SceneGraphViewer

wcount - Variable in class org.catacomb.numeric.difnet.CellPoint

wcx - Variable in class org.catacomb.graph.gui.WorldTransform

wcx0 - Variable in class org.catacomb.graph.gui.WorldTransform

wcxtp - Variable in class org.catacomb.graph.gui.WorldTransform

wcy - Variable in class org.catacomb.graph.gui.WorldTransform

wcy0 - Variable in class org.catacomb.graph.gui.WorldTransform

wcytp - Variable in class org.catacomb.graph.gui.WorldTransform

weakSetType(XType) - Method in class org.catacomb.druid.xtext.base.WordBlock

weightedSample(double[]) - Static method in class org.catacomb.numeric.math.Random

weightedSample(double[]) - Static method in class org.textensor.stochdiff.numeric.math.NRRandom

West - Class in org.catacomb.druid.blocks

West() - Constructor for class org.catacomb.druid.blocks.West

when - Variable in class org.catacomb.druid.blocks.AbleEffect

WHITE - Static variable in class org.catacomb.numeric.phys.Phys

whizzBang() - Method in class org.catacomb.druid.build.Druid

whizzNoBang() - Method in class org.catacomb.druid.build.Druid

width - Variable in class org.catacomb.dataview.build.Dataview

width - Variable in class org.catacomb.dataview.build.DVPanel

width - Variable in class org.catacomb.dataview.build.Line

width - Variable in class org.catacomb.dataview.display.PolyLine

width - Variable in class org.catacomb.dataview.GraphMaker

width - Variable in class org.catacomb.dataview.model.LineGraph

width - Variable in class org.catacomb.dataview.model.Plottable

width - Variable in class org.catacomb.druid.blocks.AssemblyPanel

width - Variable in class org.catacomb.druid.blocks.Canvas

width - Variable in class org.catacomb.druid.blocks.DataDisplay

width - Variable in class org.catacomb.druid.blocks.DrawingCanvas

width - Variable in class org.catacomb.druid.blocks.InfoPanel

width - Variable in class org.catacomb.druid.blocks.LabelledTextField

width - Variable in class org.catacomb.druid.blocks.MovieDisplay

width - Variable in class org.catacomb.druid.blocks.ScrollingInfoPanel

width - Variable in class org.catacomb.druid.blocks.TextArea

width - Variable in class org.catacomb.druid.blocks.TextField

width - Variable in class org.catacomb.druid.swing.DDropCanvas

width - Variable in class org.catacomb.druid.xtext.base.TextFloat

width - Variable in class org.catacomb.druid.xtext.canvas.DataBoard

width - Variable in class org.catacomb.druid.xtext.canvas.TextBoard

width - Variable in class org.catacomb.graph.gui.Builder

width - Variable in class org.catacomb.graph.gui.WorldTransform

width - Variable in class org.catacomb.movie.gif.AnimatedGifEncoder

width - Variable in class org.textensor.stochdiff.model.Section

widthFactor - Variable in class org.catacomb.dataview.DataPlotPainter

widthIsPixels() - Method in class org.catacomb.graph.drawing.FixedDrawingComponent

widthNames - Static variable in class org.catacomb.graph.gui.DisplayStyleSet

widths - Variable in class org.catacomb.graph.gui.DisplayStrokes

widths - Static variable in class org.catacomb.graph.gui.DisplayStyleSet

widths - Variable in class org.textensor.stochdiff.disc.DiscretizedSpine

widths - Variable in class org.textensor.stochdiff.numeric.morph.SpineProfile

wildcardGet(String) - Method in class org.catacomb.druid.build.DruidTargetStore

windowActivated(WindowEvent) - Method in class org.catacomb.druid.swing.DFrame

windowClosed(WindowEvent) - Method in class org.catacomb.druid.swing.DFrame

WindowCloser - Class in org.catacomb.druid.util.ctrl

WindowCloser() - Constructor for class org.catacomb.druid.util.ctrl.WindowCloser

windowClosing(WindowEvent) - Method in class org.catacomb.druid.swing.DFrame

windowDeactivated(WindowEvent) - Method in class org.catacomb.druid.swing.DFrame

windowDeiconified(WindowEvent) - Method in class org.catacomb.druid.swing.DFrame

WindowEditEffect - Class in org.catacomb.druid.blocks

WindowEditEffect() - Constructor for class org.catacomb.druid.blocks.WindowEditEffect

windowIconified(WindowEvent) - Method in class org.catacomb.druid.swing.DFrame

windowOpened(WindowEvent) - Method in class org.catacomb.druid.swing.DFrame

within(int, int, int[]) - Method in class org.catacomb.druid.swing.dnd.RegionStore

within(int[], int, int) - Method in class org.catacomb.graph.gui.PickStore

withinSessionTimestamp() - Static method in class org.catacomb.util.Timestamp

withoutIDs - Variable in class org.catacomb.druid.build.GUIStore

Wizard - Class in org.catacomb.druid.blocks

Wizard() - Constructor for class org.catacomb.druid.blocks.Wizard

wizards - Variable in class org.catacomb.druid.blocks.Application

wkA - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

wkA - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

wkA - Variable in class org.textensor.stochdiff.numeric.StaticCalc

wkA - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

wkB - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

wkB - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

wkBox - Variable in class org.catacomb.dataview.Plot

wkBox - Variable in class org.catacomb.graph.gui.Painter

wkC - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

wkID - Variable in class org.catacomb.interlish.reflect.ObjectBuilder

wkObject - Variable in class org.catacomb.interlish.reflect.ObjectBuilder

wkpHS - Variable in class org.textensor.stochdiff.disc.DiscBoxer

wkpHS - Variable in class org.textensor.stochdiff.disc.DiscSplitter

wkpHS - Variable in class org.textensor.stochdiff.disc.LineBoxer

wkpkg - Variable in class org.catacomb.interlish.reflect.ReflectionConstructor

wkpkg - Variable in class org.textensor.xml.ReflectionInstantiator

wkpts - Variable in class org.textensor.stochdiff.numeric.morph.TriangleStrip

wkReac - Variable in class org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

wkReac - Variable in class org.textensor.stochdiff.numeric.tmp.Tmp1A

wktm1 - Variable in class org.textensor.stochdiff.numeric.grid.DeterministicGridCalc

wmark - Variable in class org.catacomb.numeric.difnet.CellPoint

wop(IntPosition) - Method in class org.catacomb.graph.gui.Painter

wopx(int) - Method in class org.catacomb.graph.gui.Painter

wopx(int) - Method in class org.catacomb.graph.gui.WorldTransform

wopy(int) - Method in class org.catacomb.graph.gui.Painter

wopy(int) - Method in class org.catacomb.graph.gui.WorldTransform

WordBlock - Class in org.catacomb.druid.xtext.base

WordBlock() - Constructor for class org.catacomb.druid.xtext.base.WordBlock

WordBlock(String) - Constructor for class org.catacomb.druid.xtext.base.WordBlock

workbench - Variable in class org.catacomb.druid.gui.base.DruAssemblyPanel

Workbench - Interface in org.catacomb.interlish.interact

workElt - Variable in class org.catacomb.interlish.reflect.ObjectBuilder

WorldCanvas - Class in org.catacomb.graph.gui

WorldCanvas(int, int) - Constructor for class org.catacomb.graph.gui.WorldCanvas

WorldCanvas(int, int, boolean) - Constructor for class org.catacomb.graph.gui.WorldCanvas

worldTransform - Variable in class org.catacomb.graph.gui.Painter

worldTransform - Variable in class org.catacomb.graph.gui.PickHandler

WorldTransform - Class in org.catacomb.graph.gui

WorldTransform() - Constructor for class org.catacomb.graph.gui.WorldTransform

wrap(String) - Method in class org.catacomb.druid.swing.DInfoArea

wrapDassieString(String) - Method in class org.catacomb.xdoc.HTMLPage

wrapHTMLText(String) - Method in class org.catacomb.xdoc.HTMLPage

wrapList(BufferedReader, StringBuffer, String, String) - Method in class org.catacomb.xdoc.TextTagger

wrapPlainString(String) - Method in class org.catacomb.xdoc.HTMLPage

wrapText(String) - Method in class org.catacomb.xdoc.HTMLPage

write() - Method in class org.catacomb.act.CaseRelayBody

write() - Method in class org.catacomb.act.MethodBody

write(DataOutputStream, Object) - Static method in class org.catacomb.dataview.read.NumericDataRW

write(String) - Method in class org.catacomb.interlish.report.StringQuietWriter

write(String) - Method in interface org.catacomb.interlish.structure.QuietWriter

write(File) - Method in class org.catacomb.serial.jar.CustomJarWriter

writeArgs() - Method in class org.catacomb.act.MethodSignature

writeByteArrayToFile(byte[], File) - Method in class org.catacomb.serial.jar.CustomJarWriter

writeByteArrayToFile(byte[], File) - Static method in class org.catacomb.util.FileUtil

writeByteArrayToFile(byte[], File) - Static method in class org.textensor.util.FileUtil

writeBytes(byte[], File) - Static method in class org.catacomb.util.FileUtil

writeBytes(byte[], File) - Static method in class org.textensor.util.FileUtil

writeCatalyzedToTable(ReactionTable, int) - Method in class org.textensor.stochdiff.model.Reaction

writeCommentSignature() - Method in class org.catacomb.act.MethodSignature

writeConcentration - Variable in class org.textensor.stochdiff.numeric.BaseCalc

writeData(NumDataStore) - Method in interface org.catacomb.numeric.run.DataWriter

writeEmptyJsFunction() - Method in class org.catacomb.act.FunctionSignature

writeForwardToTable(ReactionTable, int) - Method in class org.textensor.stochdiff.model.Reaction

writeGraphicCtrlExt() - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Writes Graphic Control Extension

writeImageDesc() - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Writes Image Descriptor

writeJsDoc() - Method in class org.catacomb.act.FunctionSignature

writeLocalFieldComments() - Method in class org.catacomb.act.Classdef

writeLSD() - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Writes Logical Screen Descriptor

writeNetscapeExt() - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Writes Netscape application extension to define repeat count.

writeObject(Object) - Method in class org.catacomb.serial.xml.XMLWriter

writeObject(Object) - Method in class org.textensor.xml.XMLWriter

writePalette() - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Writes color table

writePixels() - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Encodes and writes pixel data

writePNG(RenderedImage, File) - Static method in class org.catacomb.util.ImageUtil

writePos() - Method in class org.textensor.stochdiff.model.EndPoint

writer - Variable in class org.textensor.stochdiff.ResultWriter

writeResource(Object, String) - Method in class org.catacomb.serial.om.OmFileReader

writeResource(Object, String) - Method in class org.catacomb.serial.om.OmFileWriter

writeReverseToTable(ReactionTable, int) - Method in class org.textensor.stochdiff.model.Reaction

writeScripts(Object, int) - Method in class org.catacomb.interlish.service.ScriptManager

writeScripts(Object) - Method in interface org.catacomb.interlish.service.ScriptSource

writeShort(int) - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Write 16-bit value to output stream, LSB first

writeState(StateNode) - Method in class org.catacomb.numeric.difnet.calc.NetMapNode

writeState(NetState) - Method in class org.catacomb.numeric.difnet.calc.OrderedNetMap

writeString(DataOutputStream, String) - Static method in class org.catacomb.dataview.read.NumericDataRW

writeString(String) - Method in class org.catacomb.movie.gif.AnimatedGifEncoder

Writes string to output stream

writeString(String) - Method in class org.textensor.stochdiff.ResultWriter

writeStringToFile(String, File) - Static method in class org.catacomb.util.FileUtil

writeStringToFile(String, File) - Static method in class org.textensor.util.FileUtil

writeSubSource() - Method in class org.catacomb.act.Classdef

writeSubSourceMethods() - Method in class org.catacomb.act.Classdef

writeSWC(File) - Method in class org.textensor.stochdiff.numeric.morph.TreeWriter

writeSystemFieldComments() - Method in class org.catacomb.act.Classdef

writeSystemFieldComments(String) - Method in class org.catacomb.act.Classdef

writeSystemSignatures() - Method in class org.catacomb.act.Classdef

writeSystemSource() - Method in class org.catacomb.act.Classdef

writeTo(StimulationTable, ReactionTable) - Method in class org.textensor.stochdiff.model.InjectionStim

writeTo(double[]) - Method in class org.textensor.stochdiff.numeric.math.Column

writeToFinalSiblingFile(String, String) - Method in class org.textensor.stochdiff.ResultWriter

writeToFinalSiblingFile(String, String, String) - Method in class org.textensor.stochdiff.ResultWriter

writeToSiblingFile(String, String) - Method in class org.textensor.stochdiff.ResultWriter

writeToSiblingFile(String, String, String) - Method in class org.textensor.stochdiff.ResultWriter

writeToSiblingFileAndClose(String, String) - Method in class org.textensor.stochdiff.ResultWriter

ws - Variable in class org.catacomb.numeric.math.Matrix

ws - Variable in class org.textensor.stochdiff.numeric.math.Matrix

wsA - Variable in class org.catacomb.numeric.difnet.calc.NetMapLink

wsB - Variable in class org.catacomb.numeric.difnet.calc.NetMapLink

WSString - Class in org.catacomb.util

WSString(String) - Constructor for class org.catacomb.util.WSString

wt - Variable in class org.catacomb.dataview.AxisPainter

wt - Variable in class org.catacomb.graph.gui.WorldCanvas

wxLeft() - Method in class org.catacomb.graph.gui.WorldTransform

wxRight() - Method in class org.catacomb.graph.gui.WorldTransform

wyBottom() - Method in class org.catacomb.graph.gui.WorldTransform

wyTop() - Method in class org.catacomb.graph.gui.WorldTransform

X

x - Variable in class org.catacomb.be.Position

x - Variable in class org.catacomb.dataview.build.Displayable

x - Variable in class org.catacomb.dataview.formats.SWCDisplay.Node

x - Variable in class org.catacomb.druid.xtext.base.TextFloat

x - Variable in class org.catacomb.graph.arbor.SegmentGraphPoint

x - Variable in class org.catacomb.graph.drawing.Oval

x - Variable in class org.catacomb.graph.drawing.Rectangle

X - Static variable in interface org.catacomb.graph.gui.RangeListener

x - Variable in class org.catacomb.interlish.content.IntPosition

x - Variable in class org.catacomb.numeric.difnet.CellPoint

x - Variable in class org.catacomb.numeric.difnet.model.BasicStructureNode

x - Variable in class org.catacomb.numeric.function.AR1Noise

x - Variable in class org.textensor.stochdiff.geom.GPosition

x - Variable in class org.textensor.stochdiff.geom.GVector

x - Variable in class org.textensor.stochdiff.model.MorphPoint

x - Variable in class org.textensor.stochdiff.neuroml.MorphMLPoint

x - Variable in class org.textensor.stochdiff.numeric.morph.TreePoint

x - Variable in class org.textensor.vis.IcingPoint

x0 - Variable in class org.catacomb.graph.drawing.StraightLine

x0 - Variable in class org.catacomb.graph.drawing.Triangle

x0 - Variable in class org.catacomb.graph.gui.BoxSelectionHandler

x0 - Variable in class org.catacomb.graph.gui.TurnZoomHandler

x1 - Variable in class org.catacomb.graph.drawing.StraightLine

x1 - Variable in class org.catacomb.graph.drawing.Triangle

x1 - Variable in class org.catacomb.graph.gui.BoxSelectionHandler

x1 - Variable in class org.catacomb.graph.gui.TurnZoomHandler

x2 - Variable in class org.catacomb.graph.drawing.Triangle

X_AXIS - Static variable in class org.textensor.stochdiff.geom.GRotation

xAxis - Variable in class org.catacomb.dataview.build.DataPlot

xaxis - Variable in class org.catacomb.dataview.formats.PolyLineHandler

xaxis - Variable in class org.catacomb.dataview.model.LineGraph

XAxis - Class in org.catacomb.dataview.model

XAxis() - Constructor for class org.catacomb.dataview.model.XAxis

xAxisCanvas - Variable in class org.catacomb.graph.gui.DataDisplay

XAxisCanvas - Class in org.catacomb.graph.gui

XAxisCanvas(int, int) - Constructor for class org.catacomb.graph.gui.XAxisCanvas

xb - Variable in class org.catacomb.graph.gui.PickableRegion

xc - Variable in class org.catacomb.graph.gui.ClickZoomHandler

xc - Variable in class org.catacomb.graph.gui.PanHandler

xc - Variable in class org.catacomb.graph.gui.RollHandler

xc - Variable in class org.catacomb.graph.gui.TurntableHandler

xc - Variable in class org.catacomb.graph.gui.TurnZoomHandler

xCurrent - Variable in class org.catacomb.graph.gui.Mouse

xdat - Variable in class org.catacomb.dataview.formats.MeshSummary

xdat - Variable in class org.catacomb.graph.gui.CanvasTest

xdat - Variable in class org.catacomb.graph.gui.Demo1

XdocBase - Class in org.catacomb.xdoc

XdocBase() - Constructor for class org.catacomb.xdoc.XdocBase

xdown - Variable in class org.catacomb.druid.swing.DFloatSlider

xdown - Variable in class org.catacomb.druid.swing.DSlider

xDown - Variable in class org.catacomb.graph.gui.Mouse

xdown - Variable in class org.textensor.vis.SceneGraphViewer

xfac - Variable in class org.catacomb.graph.gui.ClickZoomHandler

xhigh - Variable in class org.catacomb.graph.gui.XAxisCanvas

XItem - Class in org.catacomb.druid.xtext.data

XItem(XType, String) - Constructor for class org.catacomb.druid.xtext.data.XItem

xlab - Variable in class org.catacomb.graph.gui.Labellee

xlabel - Variable in class org.catacomb.dataview.GraphMaker

xlabel - Variable in class org.catacomb.dataview.Plot

xlabel - Variable in class org.catacomb.graph.gui.GridPainter

xlow - Variable in class org.catacomb.graph.gui.XAxisCanvas

xmax - Variable in class org.catacomb.datalish.Box

xmax - Variable in class org.catacomb.dataview.GraphMaker

xmax - Variable in class org.catacomb.dataview.model.View

xmax - Variable in class org.catacomb.dataview.Plot

xmax - Variable in class org.catacomb.druid.blocks.ListClickArea

xmax - Variable in class org.catacomb.druid.gui.base.DruListClickActor

xMax - Variable in class org.catacomb.graph.gui.DataView

xmin - Variable in class org.catacomb.datalish.Box

xmin - Variable in class org.catacomb.dataview.GraphMaker

xmin - Variable in class org.catacomb.dataview.model.View

xmin - Variable in class org.catacomb.dataview.Plot

xmin - Variable in class org.catacomb.druid.blocks.ListClickArea

xmin - Variable in class org.catacomb.druid.gui.base.DruListClickActor

xMin - Variable in class org.catacomb.graph.gui.DataView

XMLChecker - Class in org.catacomb.serial.xml

XMLChecker() - Constructor for class org.catacomb.serial.xml.XMLChecker

XMLChecker - Class in org.textensor.xml

XMLChecker() - Constructor for class org.textensor.xml.XMLChecker

XMLContainer - Interface in org.textensor.stochdiff.inter

XMLContentReader - Class in org.catacomb.dataview.read

XMLContentReader(byte[], FUImportContext) - Constructor for class org.catacomb.dataview.read.XMLContentReader

XMLContentType - Class in org.catacomb.dataview.read

XMLContentType() - Constructor for class org.catacomb.dataview.read.XMLContentType

XMLElementWriter - Class in org.catacomb.serial.xml

XMLElementWriter() - Constructor for class org.catacomb.serial.xml.XMLElementWriter

xmlEscape(String) - Static method in class org.catacomb.serial.xml.StringEncoder

xmlEscape(String) - Static method in class org.textensor.xml.StringEncoder

XMLFileElement - Class in org.catacomb.serial.quickxml

XMLFileElement(File, String) - Constructor for class org.catacomb.serial.quickxml.XMLFileElement

XMLHolder - Class in org.catacomb.serial.xml

XMLHolder() - Constructor for class org.catacomb.serial.xml.XMLHolder

xmlns - Variable in class org.textensor.stochdiff.neuroml.morphml

xmlns_cml - Variable in class org.textensor.stochdiff.neuroml.morphml

xmlns_meta - Variable in class org.textensor.stochdiff.neuroml.morphml

xmlns_mml - Variable in class org.textensor.stochdiff.neuroml.morphml

xmlns_xsi - Variable in class org.textensor.stochdiff.neuroml.morphml

xmlReader - Variable in class org.catacomb.serial.ElementImporter

XMLReader - Class in org.catacomb.serial.xml

XMLReader(Constructor) - Constructor for class org.catacomb.serial.xml.XMLReader

XMLReader - Class in org.textensor.xml

XMLReader(ReflectionInstantiator) - Constructor for class org.textensor.xml.XMLReader

XMLReader.XMLHolder - Class in org.textensor.xml

XMLReader.XMLHolder() - Constructor for class org.textensor.xml.XMLReader.XMLHolder

xmlSerialize() - Method in class org.textensor.stochdiff.model.InitialConditions

XMLStore - Class in org.catacomb.druid.load

XMLStore() - Constructor for class org.catacomb.druid.load.XMLStore

XMLToken - Class in org.catacomb.serial.xml

XMLToken() - Constructor for class org.catacomb.serial.xml.XMLToken

XMLToken - Class in org.textensor.xml

XMLToken() - Constructor for class org.textensor.xml.XMLToken

XMLTokenizer - Class in org.catacomb.serial.xml

XMLTokenizer(String) - Constructor for class org.catacomb.serial.xml.XMLTokenizer

XMLTokenizer - Class in org.textensor.xml

XMLTokenizer(String) - Constructor for class org.textensor.xml.XMLTokenizer

xmlUnescape(String) - Static method in class org.catacomb.serial.xml.StringEncoder

xmlUnescape(String) - Static method in class org.textensor.xml.StringEncoder

xmlwrap(String, String[]) - Method in class org.catacomb.xdoc.TextTagger

XMLWriter - Class in org.catacomb.serial.xml

XMLWriter() - Constructor for class org.catacomb.serial.xml.XMLWriter

XMLWriter - Class in org.textensor.xml

XMLWriter() - Constructor for class org.textensor.xml.XMLWriter

xoff - Variable in class org.catacomb.graph.gui.PickHandler

xPadding - Variable in class org.catacomb.druid.blocks.AbstractButton

xpos - Variable in class org.catacomb.graph.arbor.ManipXYLocation

xpos - Variable in class org.catacomb.numeric.mesh.DifMeshPoint

xpref - Variable in class org.catacomb.druid.load.Settings

xProj(double, double, double) - Method in class org.catacomb.graph.gui.Painter

xProj(double, double, double) - Method in class org.catacomb.graph.gui.WorldTransform

xProjection(Vector) - Static method in class org.textensor.stochdiff.geom.Geom

xpt - Variable in class org.catacomb.dataview.build.DisplayablePoint

xpt - Variable in class org.catacomb.dataview.StringPlotElement

xpts - Variable in class org.catacomb.datalish.SpritePart

xpts - Variable in class org.catacomb.dataview.build.Line

xpts - Variable in class org.catacomb.dataview.display.PolyLine

xpts - Variable in class org.catacomb.dataview.LinePlotElement

xpts - Variable in class org.catacomb.dataview.PointsPlotElement

xpts - Variable in class org.catacomb.dataview.PolygonPlotElement

xpts - Variable in class org.catacomb.dataview.RasterRowElement

xpts - Variable in class org.catacomb.graph.drawing.GenericShape

xpts - Variable in class org.catacomb.graph.drawing.SegmentLine

xpts - Variable in class org.catacomb.graph.gui.Labellee

xpts - Variable in class org.catacomb.interlish.content.Polypoint

xpts - Variable in class org.catacomb.interlish.content.RShape

xpts - Variable in class org.catacomb.numeric.data.XYVectorScene

xrecent - Variable in class org.catacomb.druid.load.Settings

xref - Variable in class org.catacomb.graph.gui.PickableRegion

xref - Variable in class org.catacomb.graph.gui.PickStore

xRel - Variable in class org.catacomb.graph.drawing.IconWrapper

XRelation - Class in org.catacomb.druid.xtext.data

XRelation(XRelationType) - Constructor for class org.catacomb.druid.xtext.data.XRelation

XRelationTree - Class in org.catacomb.druid.xtext.edit

XRelationTree(DTextCanvas) - Constructor for class org.catacomb.druid.xtext.edit.XRelationTree

XRelationType - Class in org.catacomb.druid.xtext.data

XRelationType(String) - Constructor for class org.catacomb.druid.xtext.data.XRelationType

xRescalable - Variable in class org.catacomb.graph.gui.WorldTransform

xRotationAngle(Vector, Vector) - Static method in class org.textensor.stochdiff.geom.Geom

xsi_schemaLocation - Variable in class org.textensor.stochdiff.neuroml.morphml

xslider - Variable in class org.catacomb.druid.swing.DFloatSlider

xspace - Variable in class org.catacomb.druid.blocks.BorderPanel

xspace - Variable in class org.catacomb.druid.blocks.MultiPanel

XTDoc - Class in org.catacomb.druid.xtext.base

XTDoc(DocStore, String, ContainerBlock) - Constructor for class org.catacomb.druid.xtext.base.XTDoc

XtextPage - Class in org.catacomb.druid.xtext

XtextPage() - Constructor for class org.catacomb.druid.xtext.XtextPage

XType - Class in org.catacomb.druid.xtext.data

XType(String) - Constructor for class org.catacomb.druid.xtext.data.XType

XTypeStore - Class in org.catacomb.druid.xtext.data

XTypeStore() - Constructor for class org.catacomb.druid.xtext.data.XTypeStore

XTypeTree - Class in org.catacomb.druid.xtext.edit

XTypeTree(DTextCanvas) - Constructor for class org.catacomb.druid.xtext.edit.XTypeTree

xvec - Variable in class org.catacomb.util.Diff

XY - Static variable in class org.catacomb.graph.gui.DataView

xyloc - Variable in class org.catacomb.graph.arbor.SGAttachmentPoint

XYLocatable - Interface in org.catacomb.interlish.structure

XYLocated - Interface in org.catacomb.be

XYLocation - Interface in org.catacomb.be

xyProjection(Vector) - Static method in class org.textensor.stochdiff.geom.Geom

XYVectorScene - Class in org.catacomb.numeric.data

XYVectorScene(double[], double[], int) - Constructor for class org.catacomb.numeric.data.XYVectorScene

XYVectorSprite - Class in org.catacomb.numeric.data

XYVectorSprite(double[], double[], int, int) - Constructor for class org.catacomb.numeric.data.XYVectorSprite

xyxy - Variable in class org.catacomb.dataview.display.ViewConfig

xyxy - Variable in class org.catacomb.graph.drawing.SegmentLine

xyxy - Variable in class org.catacomb.graph.gui.BoxSelectionHandler

xZoomAbout(double, int) - Method in class org.catacomb.graph.gui.WorldTransform

xzRotationAngle(Vector) - Static method in class org.textensor.stochdiff.geom.Geom

Y

y - Variable in class org.catacomb.be.Position

y - Variable in class org.catacomb.dataview.build.Displayable

y - Variable in class org.catacomb.dataview.formats.SWCDisplay.Node

y - Variable in class org.catacomb.druid.xtext.base.TextFloat

y - Variable in class org.catacomb.graph.arbor.SegmentGraphPoint

y - Variable in class org.catacomb.graph.drawing.Oval

y - Variable in class org.catacomb.graph.drawing.Rectangle

Y - Static variable in interface org.catacomb.graph.gui.RangeListener

y - Variable in class org.catacomb.interlish.content.IntPosition

y - Variable in class org.catacomb.numeric.difnet.CellPoint

y - Variable in class org.catacomb.numeric.difnet.model.BasicStructureNode

y - Variable in class org.textensor.stochdiff.geom.GPosition

y - Variable in class org.textensor.stochdiff.geom.GVector

y - Variable in class org.textensor.stochdiff.model.MorphPoint

y - Variable in class org.textensor.stochdiff.neuroml.MorphMLPoint

y - Variable in class org.textensor.stochdiff.numeric.morph.TreePoint

y - Variable in class org.textensor.vis.IcingPoint

y0 - Variable in class org.catacomb.dataview.RasterRowElement

y0 - Variable in class org.catacomb.graph.drawing.StraightLine

y0 - Variable in class org.catacomb.graph.drawing.Triangle

y0 - Variable in class org.catacomb.graph.gui.BoxSelectionHandler

y0 - Variable in class org.catacomb.graph.gui.TurnZoomHandler

y1 - Variable in class org.catacomb.graph.drawing.StraightLine

y1 - Variable in class org.catacomb.graph.drawing.Triangle

y1 - Variable in class org.catacomb.graph.gui.BoxSelectionHandler

y1 - Variable in class org.catacomb.graph.gui.TurnZoomHandler

y2 - Variable in class org.catacomb.graph.drawing.Triangle

Y_AXIS - Static variable in class org.textensor.stochdiff.geom.GRotation

yAxis - Variable in class org.catacomb.dataview.build.DataPlot

yaxis - Variable in class org.catacomb.dataview.formats.PolyLineHandler

yaxis - Variable in class org.catacomb.dataview.model.LineGraph

YAxis - Class in org.catacomb.dataview.model

YAxis() - Constructor for class org.catacomb.dataview.model.YAxis

yAxisCanvas - Variable in class org.catacomb.graph.gui.DataDisplay

YAxisCanvas - Class in org.catacomb.graph.gui

YAxisCanvas(int, int) - Constructor for class org.catacomb.graph.gui.YAxisCanvas

yb - Variable in class org.catacomb.graph.gui.PickableRegion

yc - Variable in class org.catacomb.graph.gui.ClickZoomHandler

yc - Variable in class org.catacomb.graph.gui.PanHandler

yc - Variable in class org.catacomb.graph.gui.RollHandler

yc - Variable in class org.catacomb.graph.gui.TurntableHandler

yc - Variable in class org.catacomb.graph.gui.TurnZoomHandler

yCurrent - Variable in class org.catacomb.graph.gui.Mouse

ydat - Variable in class org.catacomb.dataview.formats.MeshSummary

ydat - Variable in class org.catacomb.graph.gui.CanvasTest

ydat - Variable in class org.catacomb.graph.gui.Demo1

ydown - Variable in class org.catacomb.druid.swing.DFloatSlider

ydown - Variable in class org.catacomb.druid.swing.DSlider

yDown - Variable in class org.catacomb.graph.gui.Mouse

ydown - Variable in class org.textensor.vis.SceneGraphViewer

YELLOW - Static variable in class org.catacomb.numeric.phys.Phys

yes() - Method in class org.catacomb.druid.dialog.ConfirmationDialogController

YES - Static variable in class org.catacomb.druid.swing.DFrame

YES - Static variable in interface org.catacomb.interlish.structure.NameFilter

yfac - Variable in class org.catacomb.graph.gui.ClickZoomHandler

yhigh - Variable in class org.catacomb.graph.gui.YAxisCanvas

ylab - Variable in class org.catacomb.graph.gui.Labellee

ylabel - Variable in class org.catacomb.dataview.GraphMaker

ylabel - Variable in class org.catacomb.dataview.Plot

ylow - Variable in class org.catacomb.graph.gui.YAxisCanvas

ymax - Variable in class org.catacomb.datalish.Box

ymax - Variable in class org.catacomb.dataview.formats.MeshSummary

ymax - Variable in class org.catacomb.dataview.GraphMaker

ymax - Variable in class org.catacomb.dataview.model.View

ymax - Variable in class org.catacomb.dataview.Plot

yMax - Variable in class org.catacomb.graph.gui.DataView

ymin - Variable in class org.catacomb.datalish.Box

ymin - Variable in class org.catacomb.dataview.formats.MeshSummary

ymin - Variable in class org.catacomb.dataview.GraphMaker

ymin - Variable in class org.catacomb.dataview.model.View

ymin - Variable in class org.catacomb.dataview.Plot

yMin - Variable in class org.catacomb.graph.gui.DataView

yoff - Variable in class org.catacomb.graph.gui.PickHandler

yPadding - Variable in class org.catacomb.druid.blocks.AbstractButton

ypos - Variable in class org.catacomb.graph.arbor.ManipXYLocation

ypos - Variable in class org.catacomb.numeric.mesh.DifMeshPoint

yProj(double, double, double) - Method in class org.catacomb.graph.gui.Painter

yProj(double, double, double) - Method in class org.catacomb.graph.gui.WorldTransform

ypt - Variable in class org.catacomb.dataview.build.DisplayablePoint

ypt - Variable in class org.catacomb.dataview.StringPlotElement

ypts - Variable in class org.catacomb.datalish.SpritePart

ypts - Variable in class org.catacomb.dataview.build.Line

ypts - Variable in class org.catacomb.dataview.display.PolyLine

ypts - Variable in class org.catacomb.dataview.LinePlotElement

ypts - Variable in class org.catacomb.dataview.PointsPlotElement

ypts - Variable in class org.catacomb.dataview.PolygonPlotElement

ypts - Variable in class org.catacomb.graph.drawing.GenericShape

ypts - Variable in class org.catacomb.graph.drawing.SegmentLine

ypts - Variable in class org.catacomb.graph.gui.Labellee

ypts - Variable in class org.catacomb.interlish.content.Polypoint

ypts - Variable in class org.catacomb.interlish.content.RShape

ypts - Variable in class org.catacomb.numeric.data.XYVectorScene

yref - Variable in class org.catacomb.graph.gui.PickableRegion

yref - Variable in class org.catacomb.graph.gui.PickStore

yRel - Variable in class org.catacomb.graph.drawing.IconWrapper

yRescalable - Variable in class org.catacomb.graph.gui.WorldTransform

yspace - Variable in class org.catacomb.druid.blocks.BorderPanel

yspace - Variable in class org.catacomb.druid.blocks.MultiPanel

yvec - Variable in class org.catacomb.util.Diff

yZoomAbout(double, int) - Method in class org.catacomb.graph.gui.WorldTransform

yzRotationAngle(Vector) - Static method in class org.textensor.stochdiff.geom.Geom

Z

z - Variable in class org.catacomb.dataview.formats.SWCDisplay.Node

z - Variable in class org.catacomb.numeric.difnet.CellPoint

z - Variable in class org.catacomb.numeric.difnet.model.BasicStructureNode

z - Variable in class org.textensor.stochdiff.geom.GPosition

z - Variable in class org.textensor.stochdiff.geom.GVector

z - Variable in class org.textensor.stochdiff.model.MorphPoint

z - Variable in class org.textensor.stochdiff.neuroml.MorphMLPoint

z - Variable in class org.textensor.stochdiff.numeric.morph.TreePoint

z - Variable in class org.textensor.vis.IcingPoint

Z_AXIS - Static variable in class org.textensor.stochdiff.geom.GRotation

zElevation(Vector) - Static method in class org.textensor.stochdiff.geom.Geom

zero() - Method in class org.catacomb.numeric.math.Matrix

zero() - Method in class org.textensor.stochdiff.numeric.math.Matrix

zeroTime() - Static method in class org.catacomb.report.E

zeroTime() - Static method in class org.textensor.report.E

zMask - Variable in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

ZoneDemo - Class in org.catacomb.graph.gui

ZoneDemo() - Constructor for class org.catacomb.graph.gui.ZoneDemo

zoom(double, int, int) - Method in class org.catacomb.graph.gui.Mouse

zoom(double, double, int, int) - Method in class org.catacomb.graph.gui.Mouse

ZOOM - Static variable in class org.catacomb.graph.gui.WorldCanvas

zoom(double, int, int) - Method in class org.catacomb.graph.gui.WorldCanvas

zoom(double, double, int, int) - Method in class org.catacomb.graph.gui.WorldCanvas

zoom(double, int, int) - Method in class org.catacomb.graph.gui.WorldTransform

zoom(double, double, int, int) - Method in class org.catacomb.graph.gui.WorldTransform

ZOOM - Static variable in class org.textensor.vis.SceneGraphViewer

zoomAbout(double, int, int) - Method in class org.catacomb.graph.gui.WorldTransform

zoomAbout(double, double, int, int) - Method in class org.catacomb.graph.gui.WorldTransform

zoomBy(double) - Method in class org.textensor.vis.SceneGraphViewer

zoomCenX - Variable in class org.catacomb.graph.gui.WorldTransform

zoomCenY - Variable in class org.catacomb.graph.gui.WorldTransform

ZOOMIN - Static variable in class org.catacomb.graph.gui.WorldCanvas

ZOOMOUT - Static variable in class org.catacomb.graph.gui.WorldCanvas

zoomTo(double) - Method in class org.textensor.vis.SceneGraphViewer

zpos - Variable in class org.catacomb.numeric.mesh.DifMeshPoint

zProj(double, double, double) - Method in class org.catacomb.graph.gui.Painter

zProj(double, double, double) - Method in class org.catacomb.graph.gui.WorldTransform

zProjection(Vector) - Static method in class org.textensor.stochdiff.geom.Geom

zrange - Variable in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

zRotate(double) - Method in class org.catacomb.graph.gui.WorldTransform

zRotationAngle(Vector, Vector) - Static method in class org.textensor.stochdiff.geom.Geom

zval - Variable in class org.catacomb.dataview.formats.Mesh2plusTimeDisplay

zval - Variable in class org.catacomb.dataview.gui.Mesh2plusTimeController

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