org.catacomb.numeric.difnet.calc

Class OrderedNetMap

java.lang.Object

org.catacomb.numeric.difnet.calc.OrderedNetMap

public final class OrderedNetMap
extends java.lang.Object

OrderedNetMap - remapping of the geometry of a DiffusiveNet, ready for diffusion calculations. It is composed of NetMapNodes and NetMapLinks which correspond 1-1 to nodes and links in the DiffusiveNet, but only contain quantities relevant to the structure and diffusion calculations. The structure is set on initialization. Therafter in calculations the state of the DiffusiveNet is copied in, calculations performed, and the results copied back to the DiffusiveNet. One OrderedNetMap can be used for many DiffusiveNets if they all have the same structure. NB both points and Links have capacitances (volume / surface effects). Typically one or the other will be zero - volume for charge, surface for concentratin.

Field Summary

Fields

Modifier and Type	Field and Description
(package private) boolean	acyclic
(package private) NetMapLink[]	link
(package private) NetMapNode[]	node
private boolean	useIntrinsics

Constructor Summary

Constructors

Constructor and Description
OrderedNetMap(NetStructure dn)

Method Summary

Methods

Modifier and Type	Method and Description
private NetMapLink[]	addLink(NetMapLink[] cain, NetMapLink c)
private NetMapLink[]	extendNetMapLinkArray(NetMapLink[] ca)
(package private) NetMapNode[]	getNodes()
boolean	getUseIntrinsics()
(package private) boolean	isAcyclic()
void	print()
void	printLink(java.lang.String dir, NetMapLink lk, int lki)
(package private) void	readState(NetState dn)
private void	recindex(NetMapNode[] nodeArray, int[] inxt, NetMapLink[][] linksPerNode, NetMapNode currentNode)
void	Sp(java.lang.String s)
(package private) NetMapLink[]	tidyLinkArray(NetMapLink[] cain)
(package private) void	writeState(NetState difnet)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

node

NetMapNode[] node

link

NetMapLink[] link

acyclic

boolean acyclic

useIntrinsics

private boolean useIntrinsics

Constructor Detail

OrderedNetMap

OrderedNetMap(NetStructure dn)

Method Detail

getUseIntrinsics

public boolean getUseIntrinsics()

Sp

public void Sp(java.lang.String s)

print

public void print()

printLink

public void printLink(java.lang.String dir,
             NetMapLink lk,
             int lki)

getNodes

NetMapNode[] getNodes()

tidyLinkArray

NetMapLink[] tidyLinkArray(NetMapLink[] cain)

addLink

private NetMapLink[] addLink(NetMapLink[] cain,
                   NetMapLink c)

extendNetMapLinkArray

private NetMapLink[] extendNetMapLinkArray(NetMapLink[] ca)

recindex

private void recindex(NetMapNode[] nodeArray,
            int[] inxt,
            NetMapLink[][] linksPerNode,
            NetMapNode currentNode)

isAcyclic

boolean isAcyclic()

readState

void readState(NetState dn)

writeState

void writeState(NetState difnet)