package org.textensor.stochdiff.neuroml;
   
   import java.util.ArrayList;
   
   
   import org.textensor.report.E;
   import org.textensor.stochdiff.inter.AddableTo;
   import org.textensor.stochdiff.inter.Transitional;
   
  
  
  public class morphml implements AddableTo, Transitional {
  
      public String id;
  
      // TODO read this all into an xmlns hash map;
      public String xmlns;
      public String xmlns_mml;
      public String xmlns_meta;
      public String xmlns_cml;
      public String xmlns_xsi;
      public String xsi_schemaLocation;
  
  
      public String name;
      public String lengthUnits;
      public String length_units;
  
  
  
      public ArrayList<cell> cells = new ArrayList<cell>();
  
  
  
      public void add(Object obj) {
          if (obj instanceof cell) {
              cells.add((cell)obj);
          } else if (obj instanceof meta) {
              // ignore for now
          } else {
              E.error("unrecognized type " + obj);
          }
      }
  
  
  
      public cell getMorphMLCell() {
          cell ret = null;
          if (cells.size() > 0) {
              Object obj = cells.get(0);
              try {
                  if (obj instanceof Transitional) {
                      obj = ((Transitional)obj).getFinal();
                  }
              } catch (Exception ex) {
                  E.error("cant convert from " + obj);
              }
              ret = (cell)obj;
          }
          return ret;
      }
  
  
      public Object getFinal() {
          Object ret = null;
          if (cells.size() > 0) {
              ret = cells.get(0);
  
  //			E.info("first item in cells is a " + obj);
  
              // obj not necessarily a MorphMLCell in fact, because of population by reflection
              if (ret instanceof Transitional) {
  
                  ret = ((Transitional)ret).getFinal();
  
              }
          }
          return ret;
      }
  
  
  
  }