FindBugs Bug Detector Report

The following document contains the results of FindBugs Report

FindBugs Version is 2.0.1

Threshold is medium

Effort is min

Summary

Classes	Bugs	Errors	Missing Classes
1364	762	0	0

Files

Class	Bugs
org.catacomb.act.FunctionSignature	1
org.catacomb.act.MethodStub	3
org.catacomb.act.SignatureComparator	1
org.catacomb.be.ChangeEvent	1
org.catacomb.be.TimePoint	2
org.catacomb.datalish.SColor	1
org.catacomb.datalish.SceneConfig	2
org.catacomb.datalish.SpriteMarker	1
org.catacomb.datalish.SpritePart	3
org.catacomb.datalish.array.Array	3
org.catacomb.dataview.BatchImageMaker	2
org.catacomb.dataview.DView	1
org.catacomb.dataview.DataviewController	2
org.catacomb.dataview.FrameController	3
org.catacomb.dataview.LinePlotElement	2
org.catacomb.dataview.Plot	1
org.catacomb.dataview.PointsPlotElement	2
org.catacomb.dataview.PolygonPlotElement	2
org.catacomb.dataview.RasterRowElement	2
org.catacomb.dataview.build.CompoundView	1
org.catacomb.dataview.build.DVPanel	1
org.catacomb.dataview.build.DataPlot	4
org.catacomb.dataview.build.DataSource	3
org.catacomb.dataview.build.Dataview	6
org.catacomb.dataview.build.Displayable	2
org.catacomb.dataview.build.FrameSelector	2
org.catacomb.dataview.build.Line	1
org.catacomb.dataview.display.Displayable	1
org.catacomb.dataview.display.PolyLine	2
org.catacomb.dataview.display.ViewConfig	2
org.catacomb.dataview.formats.Mesh2plusTimeDisplay	3
org.catacomb.dataview.formats.MeshDataReader	8
org.catacomb.dataview.formats.PolyLineHandler	2
org.catacomb.dataview.formats.SWCDisplay	1
org.catacomb.dataview.formats.SWCDisplay$Node	3
org.catacomb.dataview.formats.TableDataHandler	3
org.catacomb.dataview.formats.TableDataReader	1
org.catacomb.dataview.gui.DViewPlotController	1
org.catacomb.dataview.gui.FramePlayerController	4
org.catacomb.dataview.model.Plottable	1
org.catacomb.dataview.read.CustomJarContentReader	1
org.catacomb.dataview.read.CustomJarReader	1
org.catacomb.dataview.read.JarImportContext	1
org.catacomb.dataview.read.NumericContentReader	1
org.catacomb.dataview.read.NumericContentType	1
org.catacomb.dataview.read.URLImportContext	2
org.catacomb.dataview.read.XMLContentReader	2
org.catacomb.dataview.read.XMLContentType	1
org.catacomb.druid.blocks.AbleEffect	2
org.catacomb.druid.blocks.Application	2
org.catacomb.druid.blocks.AssemblyPanel	4
org.catacomb.druid.blocks.AutonomousPanel	3
org.catacomb.druid.blocks.BorderPanel	2
org.catacomb.druid.blocks.BoxPanel	1
org.catacomb.druid.blocks.BrowserPanel	3
org.catacomb.druid.blocks.Button	1
org.catacomb.druid.blocks.CardSelectionEffect	2
org.catacomb.druid.blocks.Checkbox	2
org.catacomb.druid.blocks.CheckboxMenuItem	2
org.catacomb.druid.blocks.CheckboxTree	2
org.catacomb.druid.blocks.ChildrenOf	1
org.catacomb.druid.blocks.Choice	8
org.catacomb.druid.blocks.CloseEffect	1
org.catacomb.druid.blocks.CollapsiblePanel	1
org.catacomb.druid.blocks.ColorChoice	1
org.catacomb.druid.blocks.ContainerPanel	1
org.catacomb.druid.blocks.DashedLine	3
org.catacomb.druid.blocks.DataDisplay	2
org.catacomb.druid.blocks.Dialog	2
org.catacomb.druid.blocks.DrawingCanvas	3
org.catacomb.druid.blocks.DropBox	1
org.catacomb.druid.blocks.EditorWindow	1
org.catacomb.druid.blocks.ExpandingTextArea	1
org.catacomb.druid.blocks.FloatSlider	2
org.catacomb.druid.blocks.Frame	2
org.catacomb.druid.blocks.HTMLPanel	3
org.catacomb.druid.blocks.ImageLabel	3
org.catacomb.druid.blocks.InfoButton	1
org.catacomb.druid.blocks.InfoPanel	2
org.catacomb.druid.blocks.InitialInfo	1
org.catacomb.druid.blocks.Insert	3
org.catacomb.druid.blocks.IntSlider	2
org.catacomb.druid.blocks.KitPanel	1
org.catacomb.druid.blocks.Label	3
org.catacomb.druid.blocks.LabelledTextField	5
org.catacomb.druid.blocks.List	3
org.catacomb.druid.blocks.LogPanel	4
org.catacomb.druid.blocks.LoggedButton	2
org.catacomb.druid.blocks.MenuButton	2
org.catacomb.druid.blocks.MenuItem	2
org.catacomb.druid.blocks.MovieDisplay	2
org.catacomb.druid.blocks.Panel	1
org.catacomb.druid.blocks.ProgressReport	1
org.catacomb.druid.blocks.RadioButtons	2
org.catacomb.druid.blocks.Requisite	1
org.catacomb.druid.blocks.ScrollPanel	4
org.catacomb.druid.blocks.ScrollableTextPanel	3
org.catacomb.druid.blocks.ScrollingCheckboxList	1
org.catacomb.druid.blocks.ScrollingHTMLPanel	4
org.catacomb.druid.blocks.ScrollingInfoPanel	5
org.catacomb.druid.blocks.ScrollingList	1
org.catacomb.druid.blocks.SplashScreen	1
org.catacomb.druid.blocks.StatusBar	1
org.catacomb.druid.blocks.SuggestEffect	1
org.catacomb.druid.blocks.TableTree	3
org.catacomb.druid.blocks.TextArea	2
org.catacomb.druid.blocks.TextField	3
org.catacomb.druid.blocks.TextPanel	3
org.catacomb.druid.blocks.ToggleButton	2
org.catacomb.druid.blocks.TreePanel	1
org.catacomb.druid.blocks.WindowEditEffect	2
org.catacomb.druid.build.Context	2
org.catacomb.druid.build.Druid	1
org.catacomb.druid.dialog.Dialoguer	1
org.catacomb.druid.gui.base.DruActionRelay	5
org.catacomb.druid.gui.base.DruScrollingHTMLPanel	1
org.catacomb.druid.gui.edit.DruCheckboxListPanel	2
org.catacomb.druid.gui.edit.DruCheckboxTreePanel	1
org.catacomb.druid.gui.edit.DruColorChoice	1
org.catacomb.druid.gui.edit.DruFloat	1
org.catacomb.druid.gui.edit.DruInt	1
org.catacomb.druid.gui.edit.DruListPanel	2
org.catacomb.druid.gui.edit.DruToggleListPanel	1
org.catacomb.druid.gui.edit.DruWindowEditEffect	1
org.catacomb.druid.guimodel.Log	1
org.catacomb.druid.load.DruidAppBase	1
org.catacomb.druid.load.DruidContentLoader	2
org.catacomb.druid.load.Settings	1
org.catacomb.druid.manifest.DecFile	1
org.catacomb.druid.market.HookupBoard	1
org.catacomb.druid.swing.CheckTreeSelectionModel	1
org.catacomb.druid.swing.DChoice	1
org.catacomb.druid.swing.DFrame	3
org.catacomb.druid.swing.DImageButton	1
org.catacomb.druid.swing.DList	1
org.catacomb.druid.swing.DListProgressRenderer	1
org.catacomb.druid.swing.DPlainTextEditor	1
org.catacomb.druid.swing.DPopLabel	1
org.catacomb.druid.swing.DRadioButtons	1
org.catacomb.druid.swing.DSlider	1
org.catacomb.druid.swing.DSplitPaneUI	1
org.catacomb.druid.swing.DTabbedPane	1
org.catacomb.druid.swing.DTreeDragSource	1
org.catacomb.druid.swing.DTreeDropTarget	2
org.catacomb.druid.swing.dnd.DdndTransferable	1
org.catacomb.druid.swing.dnd.InternalTransferHandler	1
org.catacomb.druid.swing.dnd.Region	2
org.catacomb.druid.swing.dnd.RegionBoard	2
org.catacomb.druid.swing.dnd.RegionDragSource	1
org.catacomb.druid.swing.dnd.RegionDropTarget	3
org.catacomb.druid.swing.dnd.RegionStore	1
org.catacomb.druid.swing.dnd.TextFieldDropTarget	3
org.catacomb.druid.swing.split.SplitterLayout	2
org.catacomb.druid.util.tree.RelationTree	3
org.catacomb.druid.xtext.base.Block	1
org.catacomb.druid.xtext.base.DocStore	1
org.catacomb.druid.xtext.base.Guise	2
org.catacomb.druid.xtext.base.TextBlock	2
org.catacomb.druid.xtext.canvas.DataBoard	1
org.catacomb.druid.xtext.canvas.KeyWriter	1
org.catacomb.druid.xtext.canvas.TextBoard	1
org.catacomb.druid.xtext.data.XType	1
org.catacomb.graph.arbor.SegmentGraph	1
org.catacomb.graph.arbor.SegmentGraphPainter	2
org.catacomb.graph.arbor.SegmentGraphPoint	2
org.catacomb.graph.arbor.SegmentGraphVE	3
org.catacomb.graph.drawing.FixedDrawingComponent	3
org.catacomb.graph.drawing.GenericShape	2
org.catacomb.graph.drawing.SegmentLine	7
org.catacomb.graph.drawing.Shape	6
org.catacomb.graph.drawing.ShapeSymmetry	2
org.catacomb.graph.drawing.VectorIcon	1
org.catacomb.graph.gui.Builder	2
org.catacomb.graph.gui.CornerPanel	1
org.catacomb.graph.gui.DataView	4
org.catacomb.graph.gui.DisplayStrokes	2
org.catacomb.graph.gui.DisplayStyleSet	7
org.catacomb.graph.gui.GraphContextMenu$GCMHandler	1
org.catacomb.graph.gui.Iconizer	1
org.catacomb.graph.gui.Labellee	4
org.catacomb.graph.gui.MovieDisplay$MDThreadRunner	1
org.catacomb.graph.gui.Painter	1
org.catacomb.graph.gui.PickHandler	1
org.catacomb.graph.gui.PickablePoint	2
org.catacomb.graph.gui.PickableRegion	8
org.catacomb.graph.gui.PointPainter	1
org.catacomb.graph.gui.RollHandler	1
org.catacomb.graph.gui.WorldTransform	1
org.catacomb.icon.splash.Splasher	2
org.catacomb.interlish.content.BasicTouchTime	2
org.catacomb.interlish.content.ColorTable	1
org.catacomb.interlish.content.KeyedMultiList	1
org.catacomb.interlish.content.Polypoint	7
org.catacomb.interlish.content.QuantifiedListValue	3
org.catacomb.interlish.content.RShape	4
org.catacomb.interlish.interact.CodgerTask	2
org.catacomb.interlish.lang.U	1
org.catacomb.interlish.reflect.Narrower	2
org.catacomb.interlish.reflect.ObjectBuilder	1
org.catacomb.interlish.reflect.ReflectionConstructor	4
org.catacomb.interlish.report.Message	3
org.catacomb.interlish.report.UserLog	1
org.catacomb.interlish.service.AppPersist	1
org.catacomb.interlish.service.Env	1
org.catacomb.interlish.structure.InfoMessage	1
org.catacomb.interlish.util.JUtil	11
org.catacomb.movie.gif.AnimatedGifEncoder	1
org.catacomb.movie.gif.ByteAccumulator	3
org.catacomb.movie.gif.NeuQuant	3
org.catacomb.numeric.data.AnimSlice	1
org.catacomb.numeric.data.AsciiIO	3
org.catacomb.numeric.data.DDSlice	3
org.catacomb.numeric.data.DDSubSlice	1
org.catacomb.numeric.data.DSlice	1
org.catacomb.numeric.data.DVector	1
org.catacomb.numeric.data.DataSetArray	1
org.catacomb.numeric.data.DataSlice	2
org.catacomb.numeric.data.DataTable	3
org.catacomb.numeric.data.DoubleArray	2
org.catacomb.numeric.data.EventSequence	2
org.catacomb.numeric.data.FloatRow	2
org.catacomb.numeric.data.FloatVector	2
org.catacomb.numeric.data.NumDataSetFactory	1
org.catacomb.numeric.data.NumDataStore	1
org.catacomb.numeric.data.SimpleSpriteBlock	3
org.catacomb.numeric.data.XYVectorScene	4
org.catacomb.numeric.difnet.CellPoint	8
org.catacomb.numeric.difnet.calc.NetMapNode	1
org.catacomb.numeric.difnet.calc.OrderedNetMap	1
org.catacomb.numeric.difnet.model.BasicNetRecorder	1
org.catacomb.numeric.difnet.model.BasicNetState	9
org.catacomb.numeric.difnet.model.BasicNetStructure	4
org.catacomb.numeric.difnet.model.BasicStateNode	1
org.catacomb.numeric.difnet.model.BasicStructureLink	2
org.catacomb.numeric.math.DiagonalBlockMatrix	1
org.catacomb.numeric.math.Matrix	3
org.catacomb.numeric.mesh.DifMesh	3
org.catacomb.numeric.mesh.DifMeshBuilder	1
org.catacomb.numeric.mesh.DifMeshPoint	1
org.catacomb.numeric.mesh.Discretizer	1
org.catacomb.report.E	2
org.catacomb.serial.jar.CustomJarWriter	2
org.catacomb.serial.om.OmElement	1
org.catacomb.serial.quickxml.Element	1
org.catacomb.serial.quickxml.XMLFileElement	1
org.catacomb.serial.state.FieldState	2
org.catacomb.serial.state.MainState	1
org.catacomb.serial.state.MainType	1
org.catacomb.serial.state.ModelState	3
org.catacomb.serial.state.TypeClass	1
org.catacomb.serial.xml.XMLReader	1
org.catacomb.serial.xml.XMLToken	2
org.catacomb.serial.xml.XMLTokenizer	1
org.catacomb.util.ArrayUtil	2
org.catacomb.util.Base64	1
org.catacomb.util.CRC	1
org.catacomb.util.ColorDef	1
org.catacomb.util.ColorUtil	1
org.catacomb.util.Diff$change	1
org.catacomb.util.Diff$file_data	1
org.catacomb.util.DiffPrint	3
org.catacomb.util.DiffPrint$Base	1
org.catacomb.util.DirRef	1
org.catacomb.util.FileAccumulator	2
org.catacomb.util.FileUtil	14
org.catacomb.util.NetUtil	3
org.catacomb.util.StringTree	1
org.catacomb.util.StringUtil	1
org.textensor.report.Debug	1
org.textensor.report.E	2
org.textensor.stochdiff.ResultWriter	11
org.textensor.stochdiff.disc.CurvedVolumeSlice	3
org.textensor.stochdiff.disc.DiscBoxer	3
org.textensor.stochdiff.disc.DiscSplitter	2
org.textensor.stochdiff.disc.DiscretizedSpine	8
org.textensor.stochdiff.disc.LineBoxer	2
org.textensor.stochdiff.disc.Resolution	1
org.textensor.stochdiff.disc.SegmentSlicer	1
org.textensor.stochdiff.disc.TreeBoxDiscretizer	1
org.textensor.stochdiff.disc.TreeCurvedElementDiscretizer	1
org.textensor.stochdiff.inter.SDState	1
org.textensor.stochdiff.model.ConcentrationSet	2
org.textensor.stochdiff.model.Discretization	2
org.textensor.stochdiff.model.FitConstraints	1
org.textensor.stochdiff.model.MaxAspectRatio	1
org.textensor.stochdiff.model.MorphPoint	1
org.textensor.stochdiff.model.NumberDensity	1
org.textensor.stochdiff.model.OutputScheme	1
org.textensor.stochdiff.model.OutputSet	3
org.textensor.stochdiff.model.PicoSD	1
org.textensor.stochdiff.model.Reaction	2
org.textensor.stochdiff.model.ReactionScheme	1
org.textensor.stochdiff.model.Specie	2
org.textensor.stochdiff.model.SpecieRef	1
org.textensor.stochdiff.model.SpineType	1
org.textensor.stochdiff.model.SurfaceDensitySet	2
org.textensor.stochdiff.model.SurfaceLayers	1
org.textensor.stochdiff.neuroml.MetaItem	6
org.textensor.stochdiff.neuroml.cable	3
org.textensor.stochdiff.neuroml.cell	4
org.textensor.stochdiff.neuroml.meta	3
org.textensor.stochdiff.neuroml.morphml	11
org.textensor.stochdiff.neuroml.segment	2
org.textensor.stochdiff.numeric.BaseCalc	10
org.textensor.stochdiff.numeric.StaticCalc	5
org.textensor.stochdiff.numeric.chem.ReactionTable	10
org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc	2
org.textensor.stochdiff.numeric.math.Column	2
org.textensor.stochdiff.numeric.math.Matrix	5
org.textensor.stochdiff.numeric.math.MersenneTwister	1
org.textensor.stochdiff.numeric.morph.CurvedVolumeElement	7
org.textensor.stochdiff.numeric.morph.SpineDistribution	2
org.textensor.stochdiff.numeric.morph.SpineProfile	8
org.textensor.stochdiff.numeric.morph.TreePoint	3
org.textensor.stochdiff.numeric.morph.TreeWriter	1
org.textensor.stochdiff.numeric.morph.VolumeElement	3
org.textensor.stochdiff.numeric.morph.VolumeGrid	10
org.textensor.stochdiff.numeric.morph.VolumeLine	3
org.textensor.stochdiff.numeric.stochastic.DiscretePStepGenerator	1
org.textensor.stochdiff.numeric.stochastic.NGoTable	1
org.textensor.stochdiff.numeric.tmp.Tmp1A	2
org.textensor.stochdiff.reduce.Reducer	2
org.textensor.util.ArrayUtil	1
org.textensor.util.FileUtil	11
org.textensor.vis.ElementReader	3
org.textensor.vis.Icing3DViewer	2
org.textensor.vis.IcingPoint	1
org.textensor.vis.SceneGraphViewer	7
org.textensor.vis.VolElt	6
org.textensor.xml.Narrower	2
org.textensor.xml.ReflectionInstantiator	1
org.textensor.xml.XMLReader	3
org.textensor.xml.XMLReader$XMLHolder	1
org.textensor.xml.XMLToken	2
org.textensor.xml.XMLTokenizer	3

org.catacomb.act.FunctionSignature

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.act.FunctionSignature.argTypes	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	101	Medium

org.catacomb.act.MethodStub

Bug	Category	Details	Line	Priority
Unread public/protected field: org.catacomb.act.MethodStub.arglist	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	50	Medium
Unread public/protected field: org.catacomb.act.MethodStub.info	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	21	Medium
Unread public/protected field: org.catacomb.act.MethodStub.visibility	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	29	Medium

org.catacomb.act.SignatureComparator

Bug	Category	Details	Line	Priority
org.catacomb.act.SignatureComparator implements Comparator but not Serializable	BAD_PRACTICE	SE_COMPARATOR_SHOULD_BE_SERIALIZABLE	5-26	Medium

org.catacomb.be.ChangeEvent

Bug	Category	Details	Line	Priority
Write to static field org.catacomb.be.ChangeEvent.counter from instance method new org.catacomb.be.ChangeEvent(String, Object)	STYLE	ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD	24	Medium

org.catacomb.be.TimePoint

Bug	Category	Details	Line	Priority
org.catacomb.be.TimePoint.getProgressDescription() invokes inefficient new Integer(int) constructor; use Integer.valueOf(int) instead	PERFORMANCE	DM_NUMBER_CTOR	56	Medium
org.catacomb.be.TimePoint.getProgressDescription() invokes inefficient new Long(long) constructor; use Long.valueOf(long) instead	PERFORMANCE	DM_NUMBER_CTOR	55	Medium

org.catacomb.datalish.SColor

Bug	Category	Details	Line	Priority
Load of known null value in org.catacomb.datalish.SColor.parseColor(String)	STYLE	NP_LOAD_OF_KNOWN_NULL_VALUE	72	Medium

org.catacomb.datalish.SceneConfig

Bug	Category	Details	Line	Priority
org.catacomb.datalish.SceneConfig.getPlacements() may expose internal representation by returning SceneConfig.placements	MALICIOUS_CODE	EI_EXPOSE_REP	45	Medium
new org.catacomb.datalish.SceneConfig(double, SpritePlacement[], SpriteEvents) may expose internal representation by storing an externally mutable object into SceneConfig.placements	MALICIOUS_CODE	EI_EXPOSE_REP2	29	Medium

org.catacomb.datalish.SpriteMarker

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.datalish.SpriteMarker.id	PERFORMANCE	URF_UNREAD_FIELD	13	Medium

org.catacomb.datalish.SpritePart

Bug	Category	Details	Line	Priority
new org.catacomb.datalish.SpritePart(double[], double[], double, SColor, SColor, int) may expose internal representation by storing an externally mutable object into SpritePart.xpts	MALICIOUS_CODE	EI_EXPOSE_REP2	18	Medium
new org.catacomb.datalish.SpritePart(double[], double[], double, SColor, SColor, int) may expose internal representation by storing an externally mutable object into SpritePart.ypts	MALICIOUS_CODE	EI_EXPOSE_REP2	19	Medium
Unread field: org.catacomb.datalish.SpritePart.lineWidth	PERFORMANCE	URF_UNREAD_FIELD	20	Medium

org.catacomb.datalish.array.Array

Bug	Category	Details	Line	Priority
integral division result cast to double or float in org.catacomb.datalish.array.Array.intRebinFixedAR(int[][], int, int)	STYLE	ICAST_IDIV_CAST_TO_DOUBLE	226	Medium
The method name org.catacomb.datalish.array.Array.Sp(String) doesn't start with a lower case letter	BAD_PRACTICE	NM_METHOD_NAMING_CONVENTION	14-15	Medium
The method name org.catacomb.datalish.array.Array.Sq(String) doesn't start with a lower case letter	BAD_PRACTICE	NM_METHOD_NAMING_CONVENTION	18-19	Medium

org.catacomb.dataview.BatchImageMaker

Bug	Category	Details	Line	Priority
exceptional return value of java.io.File.mkdirs() ignored in org.catacomb.dataview.BatchImageMaker.makeFigure(Element)	BAD_PRACTICE	RV_RETURN_VALUE_IGNORED_BAD_PRACTICE	85	Medium
exceptional return value of java.io.File.mkdirs() ignored in org.catacomb.dataview.BatchImageMaker.makeMovie(Element)	BAD_PRACTICE	RV_RETURN_VALUE_IGNORED_BAD_PRACTICE	129	Medium

org.catacomb.dataview.DView

Bug	Category	Details	Line	Priority
Write to static field org.catacomb.dataview.DView.doneInit from instance method new org.catacomb.dataview.DView(File)	STYLE	ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD	49	Medium

org.catacomb.dataview.DataviewController

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.dataview.DataviewController.datsrc	PERFORMANCE	URF_UNREAD_FIELD	46	Medium

org.catacomb.dataview.FrameController

Bug	Category	Details	Line	Priority
Null pointer dereference of FrameController.framePlayer in org.catacomb.dataview.FrameController.start()	CORRECTNESS	NP_ALWAYS_NULL	191	High
Read of unwritten field framePlayer in org.catacomb.dataview.FrameController.start()	CORRECTNESS	NP_UNWRITTEN_FIELD	191	Medium
Field only ever set to null: org.catacomb.dataview.FrameController.framePlayer	CORRECTNESS	UWF_NULL_FIELD	Not available	High

org.catacomb.dataview.LinePlotElement

Bug	Category	Details	Line	Priority
new org.catacomb.dataview.LinePlotElement(double[], double[], Color) may expose internal representation by storing an externally mutable object into LinePlotElement.xpts	MALICIOUS_CODE	EI_EXPOSE_REP2	20	Medium
new org.catacomb.dataview.LinePlotElement(double[], double[], Color) may expose internal representation by storing an externally mutable object into LinePlotElement.ypts	MALICIOUS_CODE	EI_EXPOSE_REP2	21	Medium

org.catacomb.dataview.Plot

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.dataview.Plot.wkBox	PERFORMANCE	URF_UNREAD_FIELD	33	Medium

org.catacomb.dataview.PointsPlotElement

Bug	Category	Details	Line	Priority
new org.catacomb.dataview.PointsPlotElement(double[], double[], Color, int, int) may expose internal representation by storing an externally mutable object into PointsPlotElement.xpts	MALICIOUS_CODE	EI_EXPOSE_REP2	31	Medium
new org.catacomb.dataview.PointsPlotElement(double[], double[], Color, int, int) may expose internal representation by storing an externally mutable object into PointsPlotElement.ypts	MALICIOUS_CODE	EI_EXPOSE_REP2	32	Medium

org.catacomb.dataview.PolygonPlotElement

Bug	Category	Details	Line	Priority
new org.catacomb.dataview.PolygonPlotElement(double[], double[], Color) may expose internal representation by storing an externally mutable object into PolygonPlotElement.xpts	MALICIOUS_CODE	EI_EXPOSE_REP2	20	Medium
new org.catacomb.dataview.PolygonPlotElement(double[], double[], Color) may expose internal representation by storing an externally mutable object into PolygonPlotElement.ypts	MALICIOUS_CODE	EI_EXPOSE_REP2	21	Medium

org.catacomb.dataview.RasterRowElement

Bug	Category	Details	Line	Priority
new org.catacomb.dataview.RasterRowElement(double[], double[], double, double, double, double) may expose internal representation by storing an externally mutable object into RasterRowElement.vals	MALICIOUS_CODE	EI_EXPOSE_REP2	23	Medium
new org.catacomb.dataview.RasterRowElement(double[], double[], double, double, double, double) may expose internal representation by storing an externally mutable object into RasterRowElement.xpts	MALICIOUS_CODE	EI_EXPOSE_REP2	22	Medium

org.catacomb.dataview.build.CompoundView

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.dataview.build.CompoundView.layout	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.dataview.build.DVPanel

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.dataview.build.DVPanel.title	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.dataview.build.DataPlot

Bug	Category	Details	Line	Priority
Read of unwritten public or protected field xAxis in org.catacomb.dataview.build.DataPlot.makePanel(Context)	STYLE	NP_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	40	Medium
Read of unwritten public or protected field yAxis in org.catacomb.dataview.build.DataPlot.makePanel(Context)	STYLE	NP_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	41	Medium
Unwritten public or protected field: org.catacomb.dataview.build.DataPlot.xAxis	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	40	Medium
Unwritten public or protected field: org.catacomb.dataview.build.DataPlot.yAxis	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	41	Medium

org.catacomb.dataview.build.DataSource

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.dataview.build.DataSource.binary	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.catacomb.dataview.build.DataSource.binaryurl	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.catacomb.dataview.build.DataSource.path	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unwritten public or protected field: org.catacomb.dataview.build.DataSource.file	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	126	Medium

org.catacomb.dataview.build.Dataview

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.dataview.build.Dataview.height	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.catacomb.dataview.build.Dataview.name	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.catacomb.dataview.build.Dataview.width	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unwritten public or protected field: org.catacomb.dataview.build.Dataview.dataSource	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	52	Medium
Unwritten public or protected field: org.catacomb.dataview.build.Dataview.frameSelector	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	122	Medium
Unwritten public or protected field: org.catacomb.dataview.build.Dataview.layout	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	101	Medium

org.catacomb.dataview.build.Displayable

Bug	Category	Details	Line	Priority
Read of unwritten public or protected field color in org.catacomb.dataview.build.Displayable.extractColor()	STYLE	NP_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	30	Medium
Unwritten public or protected field: org.catacomb.dataview.build.Displayable.color	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	30	Medium

org.catacomb.dataview.build.FrameSelector

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.dataview.build.FrameSelector.display	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	24	Medium
Unwritten public or protected field: org.catacomb.dataview.build.FrameSelector.source	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	24	Medium

org.catacomb.dataview.build.Line

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.dataview.build.Line.ilabel	PERFORMANCE	URF_UNREAD_FIELD	24	Medium

org.catacomb.dataview.display.Displayable

Bug	Category	Details	Line	Priority
Unread public/protected field: org.catacomb.dataview.display.Displayable.label	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	15	Medium

org.catacomb.dataview.display.PolyLine

Bug	Category	Details	Line	Priority
new org.catacomb.dataview.display.PolyLine(String, Color, double[], double[], double) may expose internal representation by storing an externally mutable object into PolyLine.xpts	MALICIOUS_CODE	EI_EXPOSE_REP2	21	Medium
new org.catacomb.dataview.display.PolyLine(String, Color, double[], double[], double) may expose internal representation by storing an externally mutable object into PolyLine.ypts	MALICIOUS_CODE	EI_EXPOSE_REP2	22	Medium

org.catacomb.dataview.display.ViewConfig

Bug	Category	Details	Line	Priority
org.catacomb.dataview.display.ViewConfig.getLimits() may expose internal representation by returning ViewConfig.xyxy	MALICIOUS_CODE	EI_EXPOSE_REP	22	Medium
new org.catacomb.dataview.display.ViewConfig(String, double[]) may expose internal representation by storing an externally mutable object into ViewConfig.xyxy	MALICIOUS_CODE	EI_EXPOSE_REP2	12	Medium

org.catacomb.dataview.formats.Mesh2plusTimeDisplay

Bug	Category	Details	Line	Priority
org.catacomb.dataview.formats.Mesh2plusTimeDisplay.getFrameValues() may expose internal representation by returning Mesh2plusTimeDisplay.frameValues	MALICIOUS_CODE	EI_EXPOSE_REP	281	Medium
org.catacomb.dataview.formats.Mesh2plusTimeDisplay.getPlotNames() may expose internal representation by returning Mesh2plusTimeDisplay.plotNames	MALICIOUS_CODE	EI_EXPOSE_REP	124	Medium
Unused field: org.catacomb.dataview.formats.Mesh2plusTimeDisplay.plot	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium

org.catacomb.dataview.formats.MeshDataReader

Bug	Category	Details	Line	Priority
Found reliance on default encoding in org.catacomb.dataview.formats.MeshDataReader.read(): new java.io.FileReader(File)	I18N	DM_DEFAULT_ENCODING	50	High
org.catacomb.dataview.formats.MeshDataReader.getData() may expose internal representation by returning MeshDataReader.data	MALICIOUS_CODE	EI_EXPOSE_REP	168	Medium
org.catacomb.dataview.formats.MeshDataReader.getFrameValues() may expose internal representation by returning MeshDataReader.frameValues	MALICIOUS_CODE	EI_EXPOSE_REP	175	Medium
org.catacomb.dataview.formats.MeshDataReader.getMesh() may expose internal representation by returning MeshDataReader.mesh	MALICIOUS_CODE	EI_EXPOSE_REP	163	Medium
Dereference of the result of readLine() without nullcheck in org.catacomb.dataview.formats.MeshDataReader.read()	STYLE	NP_DEREFERENCE_OF_READLINE_VALUE	55	Medium
Dereference of the result of readLine() without nullcheck in org.catacomb.dataview.formats.MeshDataReader.readGridConcs(BufferedReader, int, int)	STYLE	NP_DEREFERENCE_OF_READLINE_VALUE	136	Medium
Dereference of the result of readLine() without nullcheck in org.catacomb.dataview.formats.MeshDataReader.readMesh(BufferedReader, int)	STYLE	NP_DEREFERENCE_OF_READLINE_VALUE	116	Medium
Exception is caught when Exception is not thrown in org.catacomb.dataview.formats.MeshDataReader.read()	STYLE	REC_CATCH_EXCEPTION	95	Medium

org.catacomb.dataview.formats.PolyLineHandler

Bug	Category	Details	Line	Priority
org.catacomb.dataview.formats.PolyLineHandler.getPlotNames() may expose internal representation by returning PolyLineHandler.plotNames	MALICIOUS_CODE	EI_EXPOSE_REP	70	Medium
org.catacomb.dataview.formats.PolyLineHandler.getViewOptions() may expose internal representation by returning PolyLineHandler.viewOptions	MALICIOUS_CODE	EI_EXPOSE_REP	75	Medium

org.catacomb.dataview.formats.SWCDisplay

Bug	Category	Details	Line	Priority
org.catacomb.dataview.formats.SWCDisplay.getViewOptions() may expose internal representation by returning SWCDisplay.viewOptions	MALICIOUS_CODE	EI_EXPOSE_REP	23	Medium

org.catacomb.dataview.formats.SWCDisplay$Node

Bug	Category	Details	Line	Priority
Should org.catacomb.dataview.formats.SWCDisplay$Node be a _static_ inner class?	PERFORMANCE	SIC_INNER_SHOULD_BE_STATIC	173-180	Medium
Unread field: org.catacomb.dataview.formats.SWCDisplay$Node.index	PERFORMANCE	URF_UNREAD_FIELD	174	Medium
Unread field: org.catacomb.dataview.formats.SWCDisplay$Node.z	PERFORMANCE	URF_UNREAD_FIELD	177	Medium

org.catacomb.dataview.formats.TableDataHandler

Bug	Category	Details	Line	Priority
org.catacomb.dataview.formats.TableDataHandler.getPlotNames() may expose internal representation by returning TableDataHandler.columnNames	MALICIOUS_CODE	EI_EXPOSE_REP	86	Medium
org.catacomb.dataview.formats.TableDataHandler.setColumnNames(String[]) may expose internal representation by storing an externally mutable object into TableDataHandler.columnNames	MALICIOUS_CODE	EI_EXPOSE_REP2	145	Medium
org.catacomb.dataview.formats.TableDataHandler.setData(double[][]) may expose internal representation by storing an externally mutable object into TableDataHandler.data	MALICIOUS_CODE	EI_EXPOSE_REP2	150	Medium

org.catacomb.dataview.formats.TableDataReader

Bug	Category	Details	Line	Priority
Dereference of the result of readLine() without nullcheck in org.catacomb.dataview.formats.TableDataReader.readBlock(String, BufferedReader)	STYLE	NP_DEREFERENCE_OF_READLINE_VALUE	52	Medium

org.catacomb.dataview.gui.DViewPlotController

Bug	Category	Details	Line	Priority
Load of known null value in org.catacomb.dataview.gui.DViewPlotController.showPlot(String)	STYLE	NP_LOAD_OF_KNOWN_NULL_VALUE	48	Medium

org.catacomb.dataview.gui.FramePlayerController

Bug	Category	Details	Line	Priority
Null pointer dereference of bim in org.catacomb.dataview.gui.FramePlayerController.makeMiniAnimatedGif(File, int, int)	CORRECTNESS	NP_ALWAYS_NULL	273	High
Non-virtual method call in org.catacomb.dataview.gui.FramePlayerController.makeMiniAnimatedGif(File, int, int) passes null for nonnull parameter of org.catacomb.util.AWTUtil.getScaledBufferedImage(Image, int, int)	CORRECTNESS	NP_NULL_PARAM_DEREF_NONVIRTUAL	287	High
Unused field: org.catacomb.dataview.gui.FramePlayerController.displayPath	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium
Unused field: org.catacomb.dataview.gui.FramePlayerController.sourcePath	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium

org.catacomb.dataview.model.Plottable

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.dataview.model.Plottable.label	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.dataview.read.CustomJarContentReader

Bug	Category	Details	Line	Priority
Unused field: org.catacomb.dataview.read.CustomJarContentReader.ctxt	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium

org.catacomb.dataview.read.CustomJarReader

Bug	Category	Details	Line	Priority
Found reliance on default encoding in org.catacomb.dataview.read.CustomJarReader.readAll(byte[]): new String(byte[])	I18N	DM_DEFAULT_ENCODING	51	High

org.catacomb.dataview.read.JarImportContext

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.dataview.read.JarImportContext.rootContext	PERFORMANCE	URF_UNREAD_FIELD	19	Medium

org.catacomb.dataview.read.NumericContentReader

Bug	Category	Details	Line	Priority
new org.catacomb.dataview.read.NumericContentReader(byte[], FUImportContext) may expose internal representation by storing an externally mutable object into NumericContentReader.bytes	MALICIOUS_CODE	EI_EXPOSE_REP2	17	Medium

org.catacomb.dataview.read.NumericContentType

Bug	Category	Details	Line	Priority
Found reliance on default encoding in org.catacomb.dataview.read.NumericContentType.claims(byte[]): new String(byte[])	I18N	DM_DEFAULT_ENCODING	13	High

org.catacomb.dataview.read.URLImportContext

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.dataview.read.URLImportContext.baseURL	PERFORMANCE	URF_UNREAD_FIELD	17	Medium
Unused field: org.catacomb.dataview.read.URLImportContext.baseURLDir	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium

org.catacomb.dataview.read.XMLContentReader

Bug	Category	Details	Line	Priority
Found reliance on default encoding in org.catacomb.dataview.read.XMLContentReader.getMain(): new String(byte[])	I18N	DM_DEFAULT_ENCODING	19	High
new org.catacomb.dataview.read.XMLContentReader(byte[], FUImportContext) may expose internal representation by storing an externally mutable object into XMLContentReader.bytes	MALICIOUS_CODE	EI_EXPOSE_REP2	13	Medium

org.catacomb.dataview.read.XMLContentType

Bug	Category	Details	Line	Priority
Found reliance on default encoding in org.catacomb.dataview.read.XMLContentType.claims(byte[]): new String(byte[])	I18N	DM_DEFAULT_ENCODING	10	High

org.catacomb.druid.blocks.AbleEffect

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.druid.blocks.AbleEffect.state	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	22	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.AbleEffect.target	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	22	Medium

org.catacomb.druid.blocks.Application

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.druid.blocks.Application.background	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.catacomb.druid.blocks.Application.splashScreen	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.druid.blocks.AssemblyPanel

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.base.DruAssemblyPanel in org.catacomb.druid.blocks.AssemblyPanel.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	37	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.AssemblyPanel.canvasColor	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	51	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.AssemblyPanel.dataModel	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	32	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.AssemblyPanel.shelfColor	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	55	Medium

org.catacomb.druid.blocks.AutonomousPanel

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.druid.blocks.AutonomousPanel.title	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.AutonomousPanel.backgroundColor	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	47	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.AutonomousPanel.controllerClass	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	54	Medium

org.catacomb.druid.blocks.BorderPanel

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.base.DruBorderPanel in org.catacomb.druid.blocks.BorderPanel.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	62	Medium
Nullcheck of pi at line 55 of value previously dereferenced in org.catacomb.druid.blocks.BorderPanel.populatePanel(DruPanel, Context, GUIPath)	CORRECTNESS	RCN_REDUNDANT_NULLCHECK_WOULD_HAVE_BEEN_A_NPE	55	High

org.catacomb.druid.blocks.BoxPanel

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.druid.blocks.BoxPanel.alignment	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.druid.blocks.BrowserPanel

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.base.DruBrowserPanel in org.catacomb.druid.blocks.BrowserPanel.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	25	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.BrowserPanel.content	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	20	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.BrowserPanel.show	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	29	Medium

org.catacomb.druid.blocks.Button

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruButton in org.catacomb.druid.blocks.Button.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	34	Medium

org.catacomb.druid.blocks.CardSelectionEffect

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.druid.blocks.CardSelectionEffect.show	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	19	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.CardSelectionEffect.target	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	19	Medium

org.catacomb.druid.blocks.Checkbox

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruCheckbox in org.catacomb.druid.blocks.Checkbox.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	59	Medium
Unused public or protected field: org.catacomb.druid.blocks.Checkbox.store	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.druid.blocks.CheckboxMenuItem

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.druid.blocks.CheckboxMenuItem.depends	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	47	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.CheckboxMenuItem.info	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	40	Medium

org.catacomb.druid.blocks.CheckboxTree

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruCheckboxTreePanel in org.catacomb.druid.blocks.CheckboxTree.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	23	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.CheckboxTree.flavor	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	29	Medium

org.catacomb.druid.blocks.ChildrenOf

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.druid.blocks.ChildrenOf.src	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	18	Medium

org.catacomb.druid.blocks.Choice

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruChoice in org.catacomb.druid.blocks.Choice.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	74	Medium
Unused public or protected field: org.catacomb.druid.blocks.Choice.required	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.catacomb.druid.blocks.Choice.store	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.Choice.autoset	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	112	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.Choice.from	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	122	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.Choice.labels	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	100	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.Choice.options	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	88	Medium

org.catacomb.druid.blocks.CloseEffect

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.druid.blocks.CloseEffect.target	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	19	Medium

org.catacomb.druid.blocks.CollapsiblePanel

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.base.DruCollapsiblePanel in org.catacomb.druid.blocks.CollapsiblePanel.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	40	Medium

org.catacomb.druid.blocks.ColorChoice

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.druid.blocks.ColorChoice.store	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.druid.blocks.ContainerPanel

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.druid.blocks.ContainerPanel.text	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.druid.blocks.DashedLine

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.druid.blocks.DashedLine.align	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.catacomb.druid.blocks.DashedLine.fontweight	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.catacomb.druid.blocks.DashedLine.text	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.druid.blocks.DataDisplay

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.base.DruDataDisplay in org.catacomb.druid.blocks.DataDisplay.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	49	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.DataDisplay.controls	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	52	Medium

org.catacomb.druid.blocks.Dialog

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.druid.blocks.Dialog.backgroundColor	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	56	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.Dialog.title	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	63	Medium

org.catacomb.druid.blocks.DrawingCanvas

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.base.DruDrawingCanvas in org.catacomb.druid.blocks.DrawingCanvas.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	46	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.DrawingCanvas.axisColor	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	54	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.DrawingCanvas.gridColor	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	50	Medium

org.catacomb.druid.blocks.DropBox

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruDropBox in org.catacomb.druid.blocks.DropBox.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	28	Medium

org.catacomb.druid.blocks.EditorWindow

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.druid.blocks.EditorWindow.background	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.druid.blocks.ExpandingTextArea

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruExpandingTextArea in org.catacomb.druid.blocks.ExpandingTextArea.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	22	Medium

org.catacomb.druid.blocks.FloatSlider

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruFloat in org.catacomb.druid.blocks.FloatSlider.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	32	Medium
Unused public or protected field: org.catacomb.druid.blocks.FloatSlider.store	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.druid.blocks.Frame

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.druid.blocks.Frame.backgroundColor	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	68	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.Frame.info	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	93	Medium

org.catacomb.druid.blocks.HTMLPanel

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruHTMLPanel in org.catacomb.druid.blocks.HTMLPanel.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	32	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.HTMLPanel.linkAction	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	47	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.HTMLPanel.show	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	43	Medium

org.catacomb.druid.blocks.ImageLabel

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.base.DruImageLabelPanel in org.catacomb.druid.blocks.ImageLabel.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	33	Medium

org.catacomb.druid.blocks.InfoButton

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruButton in org.catacomb.druid.blocks.InfoButton.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	31	Medium

org.catacomb.druid.blocks.InfoPanel

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.base.DruInfoPanel in org.catacomb.druid.blocks.InfoPanel.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	43	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.InfoPanel.sources	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	47	Medium

org.catacomb.druid.blocks.InitialInfo

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.druid.blocks.InitialInfo.info	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	18	Medium

org.catacomb.druid.blocks.Insert

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.druid.blocks.Insert.name	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.Insert.controllerClass	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	29	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.Insert.source	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	25	Medium

org.catacomb.druid.blocks.IntSlider

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruInt in org.catacomb.druid.blocks.IntSlider.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	28	Medium
Unused public or protected field: org.catacomb.druid.blocks.IntSlider.store	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.druid.blocks.KitPanel

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.base.DruKitPanel in org.catacomb.druid.blocks.KitPanel.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	46	Medium

org.catacomb.druid.blocks.Label

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.druid.blocks.Label.align	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	26	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.Label.fontWeight	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	34	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.Label.style	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	30	Medium

org.catacomb.druid.blocks.LabelledTextField

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruLabelledTextField in org.catacomb.druid.blocks.LabelledTextField.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	60	Medium
Unused public or protected field: org.catacomb.druid.blocks.LabelledTextField.store	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.LabelledTextField.focusAction	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	75	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.LabelledTextField.history	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	55	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.LabelledTextField.report	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	67	Medium

org.catacomb.druid.blocks.List

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruListPanel in org.catacomb.druid.blocks.List.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	52	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.List.order	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	79	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.List.renderer	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	56	Medium

org.catacomb.druid.blocks.LogPanel

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruLogPanel in org.catacomb.druid.blocks.LogPanel.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	32	Medium
Unused public or protected field: org.catacomb.druid.blocks.LogPanel.text	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.LogPanel.scope	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	34	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.LogPanel.sources	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	36	Medium

org.catacomb.druid.blocks.LoggedButton

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruLoggedButton in org.catacomb.druid.blocks.LoggedButton.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	35	Medium
Unread public/protected field: org.catacomb.druid.blocks.LoggedButton.action	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	25	Medium

org.catacomb.druid.blocks.MenuButton

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruMenuButton in org.catacomb.druid.blocks.MenuButton.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	32	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.MenuButton.show	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	45	Medium

org.catacomb.druid.blocks.MenuItem

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.druid.blocks.MenuItem.depends	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	47	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.MenuItem.info	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	40	Medium

org.catacomb.druid.blocks.MovieDisplay

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.base.DruMovieDisplay in org.catacomb.druid.blocks.MovieDisplay.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	50	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.MovieDisplay.controls	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	53	Medium

org.catacomb.druid.blocks.Panel

Bug	Category	Details	Line	Priority
Write to static field org.catacomb.druid.blocks.Panel.panelcount from instance method new org.catacomb.druid.blocks.Panel()	STYLE	ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD	54	Medium

org.catacomb.druid.blocks.ProgressReport

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruProgressReport in org.catacomb.druid.blocks.ProgressReport.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	24	Medium

org.catacomb.druid.blocks.RadioButtons

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruRadioButtons in org.catacomb.druid.blocks.RadioButtons.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	45	Medium
Unused public or protected field: org.catacomb.druid.blocks.RadioButtons.store	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.druid.blocks.Requisite

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.druid.blocks.Requisite.source	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	22	Medium

org.catacomb.druid.blocks.ScrollPanel

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.base.DruScrollPanel in org.catacomb.druid.blocks.ScrollPanel.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	41	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.ScrollPanel.bars	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	43	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.ScrollPanel.horizontal	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	65	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.ScrollPanel.vertical	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	47	Medium

org.catacomb.druid.blocks.ScrollableTextPanel

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.druid.blocks.ScrollableTextPanel.content	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.catacomb.druid.blocks.ScrollableTextPanel.dragSource	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.catacomb.druid.blocks.ScrollableTextPanel.show	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.druid.blocks.ScrollingCheckboxList

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruScrollingCheckboxListPanel in org.catacomb.druid.blocks.ScrollingCheckboxList.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	55	Medium

org.catacomb.druid.blocks.ScrollingHTMLPanel

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.base.DruScrollingHTMLPanel in org.catacomb.druid.blocks.ScrollingHTMLPanel.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	26	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.ScrollingHTMLPanel.content	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	32	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.ScrollingHTMLPanel.show	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	37	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.ScrollingHTMLPanel.stylesheet	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	41	Medium

org.catacomb.druid.blocks.ScrollingInfoPanel

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.base.DruScrollingInfoPanel in org.catacomb.druid.blocks.ScrollingInfoPanel.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	43	Medium
Unused public or protected field: org.catacomb.druid.blocks.ScrollingInfoPanel.action	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.catacomb.druid.blocks.ScrollingInfoPanel.maxlines	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.ScrollingInfoPanel.scope	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	48	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.ScrollingInfoPanel.sources	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	52	Medium

org.catacomb.druid.blocks.ScrollingList

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruScrollingListPanel in org.catacomb.druid.blocks.ScrollingList.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	55	Medium

org.catacomb.druid.blocks.SplashScreen

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.druid.blocks.SplashScreen.src	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.druid.blocks.StatusBar

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.base.DruStatusBar in org.catacomb.druid.blocks.StatusBar.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	22	Medium

org.catacomb.druid.blocks.SuggestEffect

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.druid.blocks.SuggestEffect.target	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	19	Medium

org.catacomb.druid.blocks.TableTree

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.druid.blocks.TableTree.options	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	25	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.TableTree.title	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	29	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.TableTree.type	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	21	Medium

org.catacomb.druid.blocks.TextArea

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruTextArea in org.catacomb.druid.blocks.TextArea.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	45	Medium
Unused public or protected field: org.catacomb.druid.blocks.TextArea.store	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.druid.blocks.TextField

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruTextField in org.catacomb.druid.blocks.TextField.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	44	Medium
Unused public or protected field: org.catacomb.druid.blocks.TextField.store	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.TextField.report	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	48	Medium

org.catacomb.druid.blocks.TextPanel

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.druid.blocks.TextPanel.content	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.catacomb.druid.blocks.TextPanel.dragSource	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.catacomb.druid.blocks.TextPanel.show	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.druid.blocks.ToggleButton

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruToggleButton in org.catacomb.druid.blocks.ToggleButton.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	42	Medium
Unused public or protected field: org.catacomb.druid.blocks.ToggleButton.store	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.druid.blocks.TreePanel

Bug	Category	Details	Line	Priority
Unchecked/unconfirmed cast from org.catacomb.druid.gui.base.DruPanel to org.catacomb.druid.gui.edit.DruTreePanel in org.catacomb.druid.blocks.TreePanel.populatePanel(DruPanel, Context, GUIPath)	STYLE	BC_UNCONFIRMED_CAST	53	Medium

org.catacomb.druid.blocks.WindowEditEffect

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.druid.blocks.WindowEditEffect.config	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	20	Medium
Unwritten public or protected field: org.catacomb.druid.blocks.WindowEditEffect.target	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	20	Medium

org.catacomb.druid.build.Context

Bug	Category	Details	Line	Priority
Incorrect lazy initialization and update of static field org.catacomb.druid.build.Context.infoAggregator in org.catacomb.druid.build.Context.getInfoAggregator()	MT_CORRECTNESS	LI_LAZY_INIT_UPDATE_STATIC	57-58	Medium
Write to static field org.catacomb.druid.build.Context.infoAggregator from instance method org.catacomb.druid.build.Context.setInfoAgregator(InfoAggregator)	STYLE	ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD	198	High

org.catacomb.druid.build.Druid

Bug	Category	Details	Line	Priority
org.catacomb.druid.build.Druid.bestRelay(String, HashMap, ActionRelay) makes inefficient use of keySet iterator instead of entrySet iterator	PERFORMANCE	WMI_WRONG_MAP_ITERATOR	379	Medium

org.catacomb.druid.dialog.Dialoguer

Bug	Category	Details	Line	Priority
Incorrect lazy initialization and update of static field org.catacomb.druid.dialog.Dialoguer.progressLogController in org.catacomb.druid.dialog.Dialoguer.getProgressLogger()	MT_CORRECTNESS	LI_LAZY_INIT_UPDATE_STATIC	139-140	Medium

org.catacomb.druid.gui.base.DruActionRelay

Bug	Category	Details	Line	Priority
Invocation of toString on args in org.catacomb.druid.gui.base.DruActionRelay.invokeMethod(String, Object[])	CORRECTNESS	DMI_INVOKING_TOSTRING_ON_ARRAY	171	High
org.catacomb.druid.gui.base.DruActionRelay.actionB(String, boolean) invokes inefficient Boolean constructor; use Boolean.valueOf(...) instead	PERFORMANCE	DM_BOOLEAN_CTOR	52	Medium
org.catacomb.druid.gui.base.DruActionRelay.getBoolean(String) invokes inefficient Boolean constructor; use Boolean.valueOf(...) instead	PERFORMANCE	DM_BOOLEAN_CTOR	78	Medium
org.catacomb.druid.gui.base.DruActionRelay.actionI(String, int) invokes inefficient new Integer(int) constructor; use Integer.valueOf(int) instead	PERFORMANCE	DM_NUMBER_CTOR	57	Medium
org.catacomb.druid.gui.base.DruActionRelay.invokeMethod(String, Object[]) concatenates strings using + in a loop	PERFORMANCE	SBSC_USE_STRINGBUFFER_CONCATENATION	158	Medium

org.catacomb.druid.gui.base.DruScrollingHTMLPanel

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.druid.gui.base.DruScrollingHTMLPanel.pageSupplier	PERFORMANCE	URF_UNREAD_FIELD	73	Medium

org.catacomb.druid.gui.edit.DruCheckboxListPanel

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.druid.gui.edit.DruCheckboxListPanel.multiple	PERFORMANCE	URF_UNREAD_FIELD	190	Medium
Unread field: org.catacomb.druid.gui.edit.DruCheckboxListPanel.nrow	PERFORMANCE	URF_UNREAD_FIELD	34	Medium

org.catacomb.druid.gui.edit.DruCheckboxTreePanel

Bug	Category	Details	Line	Priority
org.catacomb.druid.gui.edit.DruCheckboxTreePanel.setTree(Tree) uses the same code for two branches	STYLE	DB_DUPLICATE_BRANCHES	57	Medium

org.catacomb.druid.gui.edit.DruColorChoice

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.druid.gui.edit.DruColorChoice.labelActor	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.druid.gui.edit.DruFloat

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.druid.gui.edit.DruFloat.labelActor	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.druid.gui.edit.DruInt

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.druid.gui.edit.DruInt.labelActor	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.druid.gui.edit.DruListPanel

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.druid.gui.edit.DruListPanel.multiple	PERFORMANCE	URF_UNREAD_FIELD	43	Medium
Unread field: org.catacomb.druid.gui.edit.DruListPanel.nrow	PERFORMANCE	URF_UNREAD_FIELD	53	Medium

org.catacomb.druid.gui.edit.DruToggleListPanel

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.druid.gui.edit.DruToggleListPanel.nrow	PERFORMANCE	URF_UNREAD_FIELD	29	Medium

org.catacomb.druid.gui.edit.DruWindowEditEffect

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.druid.gui.edit.DruWindowEditEffect.config	PERFORMANCE	URF_UNREAD_FIELD	16	Medium

org.catacomb.druid.guimodel.Log

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.druid.guimodel.Log.name	PERFORMANCE	URF_UNREAD_FIELD	29	Medium

org.catacomb.druid.load.DruidAppBase

Bug	Category	Details	Line	Priority
Incorrect lazy initialization and update of static field org.catacomb.druid.load.DruidAppBase.instance in org.catacomb.druid.load.DruidAppBase.init(String, Object)	MT_CORRECTNESS	LI_LAZY_INIT_UPDATE_STATIC	40-41	Medium

org.catacomb.druid.load.DruidContentLoader

Bug	Category	Details	Line	Priority
Redundant nullcheck of s, which is known to be non-null in org.catacomb.druid.load.DruidContentLoader.loadText(DecFile)	STYLE	RCN_REDUNDANT_NULLCHECK_OF_NONNULL_VALUE	184	Medium
Unused field: org.catacomb.druid.load.DruidContentLoader.rootClass	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium

org.catacomb.druid.load.Settings

Bug	Category	Details	Line	Priority
exceptional return value of java.io.File.mkdir() ignored in new org.catacomb.druid.load.Settings(String)	BAD_PRACTICE	RV_RETURN_VALUE_IGNORED_BAD_PRACTICE	25	Medium

org.catacomb.druid.manifest.DecFile

Bug	Category	Details	Line	Priority
Hard coded reference to an absolute pathname in new org.catacomb.druid.manifest.DecFile(String)	STYLE	DMI_HARDCODED_ABSOLUTE_FILENAME	57	Medium

org.catacomb.druid.market.HookupBoard

Bug	Category	Details	Line	Priority
Write to static field org.catacomb.druid.market.HookupBoard.nextBoardNo from instance method new org.catacomb.druid.market.HookupBoard()	STYLE	ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD	22	Medium

org.catacomb.druid.swing.CheckTreeSelectionModel

Bug	Category	Details	Line	Priority
Redundant nullcheck of selectionPaths, which is known to be non-null in org.catacomb.druid.swing.CheckTreeSelectionModel.isPartiallySelected(TreePath)	STYLE	RCN_REDUNDANT_NULLCHECK_OF_NONNULL_VALUE	27	Medium

org.catacomb.druid.swing.DChoice

Bug	Category	Details	Line	Priority
org.catacomb.druid.swing.DChoice.setSelected(String) concatenates strings using + in a loop	PERFORMANCE	SBSC_USE_STRINGBUFFER_CONCATENATION	228	Medium

org.catacomb.druid.swing.DFrame

Bug	Category	Details	Line	Priority
org.catacomb.druid.swing.DFrame.applySetState() invokes inefficient new Integer(int) constructor; use Integer.valueOf(int) instead	PERFORMANCE	DM_NUMBER_CTOR	156	Medium
Write to static field org.catacomb.druid.swing.DFrame.FRAME_NORMAL from instance method org.catacomb.druid.swing.DFrame.checkStateSettable()	STYLE	ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD	130	Medium
Write to static field org.catacomb.druid.swing.DFrame.setStateMethod from instance method org.catacomb.druid.swing.DFrame.checkStateSettable()	STYLE	ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD	129	Medium

org.catacomb.druid.swing.DImageButton

Bug	Category	Details	Line	Priority
Null pointer dereference of DImageButton.lact in org.catacomb.druid.swing.DImageButton.actionPerformed(ActionEvent)	CORRECTNESS	NP_ALWAYS_NULL	75	High

org.catacomb.druid.swing.DList

Bug	Category	Details	Line	Priority
org.catacomb.druid.swing.DList.setTooltips(String[]) may expose internal representation by storing an externally mutable object into DList.tooltips	MALICIOUS_CODE	EI_EXPOSE_REP2	69	Medium

org.catacomb.druid.swing.DListProgressRenderer

Bug	Category	Details	Line	Priority
Switch statement found in org.catacomb.druid.swing.DListProgressRenderer.getListCellRendererComponent(JList, Object, int, boolean, boolean) where default case is missing	STYLE	SF_SWITCH_NO_DEFAULT	145-167	Medium

org.catacomb.druid.swing.DPlainTextEditor

Bug	Category	Details	Line	Priority
org.catacomb.druid.swing.DPlainTextEditor.setTarget(String[]) may expose internal representation by storing an externally mutable object into DPlainTextEditor.target	MALICIOUS_CODE	EI_EXPOSE_REP2	109	Medium

org.catacomb.druid.swing.DPopLabel

Bug	Category	Details	Line	Priority
org.catacomb.druid.swing.DPopLabel.setMenuOptions(String[]) may expose internal representation by storing an externally mutable object into DPopLabel.options	MALICIOUS_CODE	EI_EXPOSE_REP2	372	Medium

org.catacomb.druid.swing.DRadioButtons

Bug	Category	Details	Line	Priority
org.catacomb.druid.swing.DRadioButtons.setOptions(String[], String[]) may expose internal representation by storing an externally mutable object into DRadioButtons.labels	MALICIOUS_CODE	EI_EXPOSE_REP2	84	Medium

org.catacomb.druid.swing.DSlider

Bug	Category	Details	Line	Priority
org.catacomb.druid.swing.DSlider.setValues(String[]) may expose internal representation by storing an externally mutable object into DSlider.values	MALICIOUS_CODE	EI_EXPOSE_REP2	120	Medium

org.catacomb.druid.swing.DSplitPaneUI

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.druid.swing.DSplitPaneUI.jcomponent	PERFORMANCE	URF_UNREAD_FIELD	31	Medium

org.catacomb.druid.swing.DTabbedPane

Bug	Category	Details	Line	Priority
org.catacomb.druid.swing.DTabbedPane.applyUIColors(Color) invokes inefficient Boolean constructor; use Boolean.valueOf(...) instead	PERFORMANCE	DM_BOOLEAN_CTOR	63	Medium

org.catacomb.druid.swing.DTreeDragSource

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.druid.swing.DTreeDragSource.recognizer	PERFORMANCE	URF_UNREAD_FIELD	41	Medium

org.catacomb.druid.swing.DTreeDropTarget

Bug	Category	Details	Line	Priority
instanceof will always return true for all nonnull values in org.catacomb.druid.swing.DTreeDropTarget.dragOver(DropTargetDragEvent), since all org.catacomb.druid.swing.dnd.DragAndDrop are instances of org.catacomb.druid.swing.ImageDragSource	STYLE	BC_VACUOUS_INSTANCEOF	75	Medium
Unread field: org.catacomb.druid.swing.DTreeDropTarget.target	PERFORMANCE	URF_UNREAD_FIELD	26	Medium

org.catacomb.druid.swing.dnd.DdndTransferable

Bug	Category	Details	Line	Priority
org.catacomb.druid.swing.dnd.DdndTransferable.getTransferDataFlavors() may expose internal representation by returning DdndTransferable.flavors	MALICIOUS_CODE	EI_EXPOSE_REP	34	Medium

org.catacomb.druid.swing.dnd.InternalTransferHandler

Bug	Category	Details	Line	Priority
Invocation of toString on transferFlavors in org.catacomb.druid.swing.dnd.InternalTransferHandler.canImport(JComponent, DataFlavor[])	CORRECTNESS	DMI_INVOKING_TOSTRING_ON_ARRAY	19	High

org.catacomb.druid.swing.dnd.Region

Bug	Category	Details	Line	Priority
org.catacomb.druid.swing.dnd.Region defines equals(Region) method and uses Object.equals(Object)	CORRECTNESS	EQ_SELF_USE_OBJECT	66	Medium
org.catacomb.druid.swing.dnd.Region defines equals and uses Object.hashCode()	BAD_PRACTICE	HE_EQUALS_USE_HASHCODE	66	Medium

org.catacomb.druid.swing.dnd.RegionBoard

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.druid.swing.dnd.RegionBoard.dragSource	PERFORMANCE	URF_UNREAD_FIELD	44	Medium
Unread field: org.catacomb.druid.swing.dnd.RegionBoard.dropTarget	PERFORMANCE	URF_UNREAD_FIELD	41	Medium

org.catacomb.druid.swing.dnd.RegionDragSource

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.druid.swing.dnd.RegionDragSource.recognizer	PERFORMANCE	URF_UNREAD_FIELD	26	Medium

org.catacomb.druid.swing.dnd.RegionDropTarget

Bug	Category	Details	Line	Priority
instanceof will always return true for all nonnull values in org.catacomb.druid.swing.dnd.RegionDropTarget.dragOver(DropTargetDragEvent), since all org.catacomb.druid.swing.dnd.DragAndDrop are instances of org.catacomb.druid.swing.ImageDragSource	STYLE	BC_VACUOUS_INSTANCEOF	71	Medium
Nullcheck of bim at line 77 of value previously dereferenced in org.catacomb.druid.swing.dnd.RegionDropTarget.dragOver(DropTargetDragEvent)	CORRECTNESS	RCN_REDUNDANT_NULLCHECK_WOULD_HAVE_BEEN_A_NPE	77	High
Unread field: org.catacomb.druid.swing.dnd.RegionDropTarget.target	PERFORMANCE	URF_UNREAD_FIELD	35	Medium

org.catacomb.druid.swing.dnd.RegionStore

Bug	Category	Details	Line	Priority
org.catacomb.druid.swing.dnd.RegionStore.getActiveLimits() may expose internal representation by returning RegionStore.activeLims	MALICIOUS_CODE	EI_EXPOSE_REP	107	Medium

org.catacomb.druid.swing.dnd.TextFieldDropTarget

Bug	Category	Details	Line	Priority
instanceof will always return true for all nonnull values in org.catacomb.druid.swing.dnd.TextFieldDropTarget.dragOver(DropTargetDragEvent), since all org.catacomb.druid.swing.dnd.DragAndDrop are instances of org.catacomb.druid.swing.ImageDragSource	STYLE	BC_VACUOUS_INSTANCEOF	57	Medium
Nullcheck of bim at line 63 of value previously dereferenced in org.catacomb.druid.swing.dnd.TextFieldDropTarget.dragOver(DropTargetDragEvent)	CORRECTNESS	RCN_REDUNDANT_NULLCHECK_WOULD_HAVE_BEEN_A_NPE	63	High
Unread field: org.catacomb.druid.swing.dnd.TextFieldDropTarget.target	PERFORMANCE	URF_UNREAD_FIELD	31	Medium

org.catacomb.druid.swing.split.SplitterLayout

Bug	Category	Details	Line	Priority
org.catacomb.druid.swing.split.SplitterLayout.addLayoutComponent(String, Component) invokes inefficient new Integer(int) constructor; use Integer.valueOf(int) instead	PERFORMANCE	DM_NUMBER_CTOR	129	Medium
org.catacomb.druid.swing.split.SplitterLayout.dragee should be package protected	MALICIOUS_CODE	MS_PKGPROTECT	80	Medium

org.catacomb.druid.util.tree.RelationTree

Bug	Category	Details	Line	Priority
org.catacomb.druid.util.tree.RelationTree.getPivotNames() may expose internal representation by returning RelationTree.pivotNames	MALICIOUS_CODE	EI_EXPOSE_REP	179	Medium
org.catacomb.druid.util.tree.RelationTree.setPivotNames(String[]) may expose internal representation by storing an externally mutable object into RelationTree.pivotNames	MALICIOUS_CODE	EI_EXPOSE_REP2	184	Medium
org.catacomb.druid.util.tree.RelationTree.setPivotOrders(String[][]) may expose internal representation by storing an externally mutable object into RelationTree.pivotOrders	MALICIOUS_CODE	EI_EXPOSE_REP2	169	Medium

org.catacomb.druid.xtext.base.Block

Bug	Category	Details	Line	Priority
Unread public/protected field: org.catacomb.druid.xtext.base.Block.idInParent	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	14	Medium

org.catacomb.druid.xtext.base.DocStore

Bug	Category	Details	Line	Priority
Write to static field org.catacomb.druid.xtext.base.DocStore.iti from instance method org.catacomb.druid.xtext.base.DocStore.nextTextDoc()	STYLE	ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD	75	Medium

org.catacomb.druid.xtext.base.Guise

Bug	Category	Details	Line	Priority
Write to static field org.catacomb.druid.xtext.base.Guise.icolor from instance method org.catacomb.druid.xtext.base.Guise.setNextPaletteColor()	STYLE	ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD	52	Medium
Unread public/protected field: org.catacomb.druid.xtext.base.Guise.slots	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	44	Medium

org.catacomb.druid.xtext.base.TextBlock

Bug	Category	Details	Line	Priority
org.catacomb.druid.xtext.base.TextBlock.getCachedPosition() may expose internal representation by returning TextBlock.cachedLimits	MALICIOUS_CODE	EI_EXPOSE_REP	42	Medium
Unread field: org.catacomb.druid.xtext.base.TextBlock.cacheTime	PERFORMANCE	URF_UNREAD_FIELD	31	Medium

org.catacomb.druid.xtext.canvas.DataBoard

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.druid.xtext.canvas.DataBoard.height	PERFORMANCE	URF_UNREAD_FIELD	50	Medium

org.catacomb.druid.xtext.canvas.KeyWriter

Bug	Category	Details	Line	Priority
Nullcheck of tb at line 319 of value previously dereferenced in org.catacomb.druid.xtext.canvas.KeyWriter.deletBackwards()	CORRECTNESS	RCN_REDUNDANT_NULLCHECK_WOULD_HAVE_BEEN_A_NPE	319	High

org.catacomb.druid.xtext.canvas.TextBoard

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.druid.xtext.canvas.TextBoard.height	PERFORMANCE	URF_UNREAD_FIELD	93	Medium

org.catacomb.druid.xtext.data.XType

Bug	Category	Details	Line	Priority
org.catacomb.druid.xtext.data.XType.getFieldNames() may expose internal representation by returning XType.fieldNames	MALICIOUS_CODE	EI_EXPOSE_REP	85	Medium

org.catacomb.graph.arbor.SegmentGraph

Bug	Category	Details	Line	Priority
org.catacomb.graph.arbor.SegmentGraph.getLimits() may expose internal representation by returning SegmentGraph.bufLimits	MALICIOUS_CODE	EI_EXPOSE_REP	245	Medium

org.catacomb.graph.arbor.SegmentGraphPainter

Bug	Category	Details	Line	Priority
Unused field: org.catacomb.graph.arbor.SegmentGraphPainter.sgp1	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium
Unused field: org.catacomb.graph.arbor.SegmentGraphPainter.sgp2	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium

org.catacomb.graph.arbor.SegmentGraphPoint

Bug	Category	Details	Line	Priority
org.catacomb.graph.arbor.SegmentGraphPoint.getNeighbors() may expose internal representation by returning SegmentGraphPoint.p_nbrCache	MALICIOUS_CODE	EI_EXPOSE_REP	145	Medium
org.catacomb.graph.arbor.SegmentGraphPoint.getProtoNeighbors() may expose internal representation by returning SegmentGraphPoint.p_protoNbrs	MALICIOUS_CODE	EI_EXPOSE_REP	245	Medium

org.catacomb.graph.arbor.SegmentGraphVE

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.graph.arbor.SegmentGraphVE.pressX	PERFORMANCE	URF_UNREAD_FIELD	233	Medium
Unused field: org.catacomb.graph.arbor.SegmentGraphVE.modifiable	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium
Unused field: org.catacomb.graph.arbor.SegmentGraphVE.selectable	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium

org.catacomb.graph.drawing.FixedDrawingComponent

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.graph.drawing.FixedDrawingComponent.fillColor	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	120	Medium
Unwritten public or protected field: org.catacomb.graph.drawing.FixedDrawingComponent.lineColor	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	118	Medium
Unwritten public or protected field: org.catacomb.graph.drawing.FixedDrawingComponent.lineWidth	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	116	Medium

org.catacomb.graph.drawing.GenericShape

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.graph.drawing.GenericShape.closure	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	68	Medium
Unwritten public or protected field: org.catacomb.graph.drawing.GenericShape.symmetry	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	121	Medium

org.catacomb.graph.drawing.SegmentLine

Bug	Category	Details	Line	Priority
org.catacomb.graph.drawing.SegmentLine.getXPts() may expose internal representation by returning SegmentLine.p_x	MALICIOUS_CODE	EI_EXPOSE_REP	54	Medium
org.catacomb.graph.drawing.SegmentLine.getYPts() may expose internal representation by returning SegmentLine.p_y	MALICIOUS_CODE	EI_EXPOSE_REP	59	Medium
new org.catacomb.graph.drawing.SegmentLine(double[], double[], Color) may expose internal representation by storing an externally mutable object into SegmentLine.p_x	MALICIOUS_CODE	EI_EXPOSE_REP2	44	Medium
new org.catacomb.graph.drawing.SegmentLine(double[], double[], Color) may expose internal representation by storing an externally mutable object into SegmentLine.p_y	MALICIOUS_CODE	EI_EXPOSE_REP2	45	Medium
Unwritten public or protected field: org.catacomb.graph.drawing.SegmentLine.xpts	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	91	Medium
Unwritten public or protected field: org.catacomb.graph.drawing.SegmentLine.xyxy	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	81	Medium
Unwritten public or protected field: org.catacomb.graph.drawing.SegmentLine.ypts	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	93	Medium

org.catacomb.graph.drawing.Shape

Bug	Category	Details	Line	Priority
org.catacomb.graph.drawing.Shape.getPoints() may expose internal representation by returning Shape.p_points	MALICIOUS_CODE	EI_EXPOSE_REP	135	Medium
org.catacomb.graph.drawing.Shape.getProtoPoints() may expose internal representation by returning Shape.p_protos	MALICIOUS_CODE	EI_EXPOSE_REP	143	Medium
org.catacomb.graph.drawing.Shape.getXPts() may expose internal representation by returning Shape.xpts	MALICIOUS_CODE	EI_EXPOSE_REP	381	Medium
org.catacomb.graph.drawing.Shape.getYPts() may expose internal representation by returning Shape.ypts	MALICIOUS_CODE	EI_EXPOSE_REP	389	Medium
Unwritten public or protected field: org.catacomb.graph.drawing.Shape.fillColor	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	215	Medium
Unwritten public or protected field: org.catacomb.graph.drawing.Shape.lineColor	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	212	Medium

org.catacomb.graph.drawing.ShapeSymmetry

Bug	Category	Details	Line	Priority
public static org.catacomb.graph.drawing.ShapeSymmetry.getSymmetryNames() may expose internal representation by returning ShapeSymmetry.symmetryNames	MALICIOUS_CODE	MS_EXPOSE_REP	24	Medium
org.catacomb.graph.drawing.ShapeSymmetry.symmetryNames should be package protected	MALICIOUS_CODE	MS_PKGPROTECT	18	Medium

org.catacomb.graph.drawing.VectorIcon

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.graph.drawing.VectorIcon.ref	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	41	Medium

org.catacomb.graph.gui.Builder

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.graph.gui.Builder.height	PERFORMANCE	URF_UNREAD_FIELD	26	Medium
Unread field: org.catacomb.graph.gui.Builder.width	PERFORMANCE	URF_UNREAD_FIELD	25	Medium

org.catacomb.graph.gui.CornerPanel

Bug	Category	Details	Line	Priority
Unwritten field: org.catacomb.graph.gui.CornerPanel.ibut	CORRECTNESS	UWF_UNWRITTEN_FIELD	38	Medium

org.catacomb.graph.gui.DataView

Bug	Category	Details	Line	Priority
org.catacomb.graph.gui.DataView.getMultiIndexes() may expose internal representation by returning DataView.multiIndexes	MALICIOUS_CODE	EI_EXPOSE_REP	170	Medium
org.catacomb.graph.gui.DataView.getOrdinates() may expose internal representation by returning DataView.ordinates	MALICIOUS_CODE	EI_EXPOSE_REP	121	Medium
org.catacomb.graph.gui.DataView.setMultiIndexes(int[]) may expose internal representation by storing an externally mutable object into DataView.multiIndexes	MALICIOUS_CODE	EI_EXPOSE_REP2	166	Medium
org.catacomb.graph.gui.DataView.setOrdinates(String[]) may expose internal representation by storing an externally mutable object into DataView.ordinates	MALICIOUS_CODE	EI_EXPOSE_REP2	112	Medium

org.catacomb.graph.gui.DisplayStrokes

Bug	Category	Details	Line	Priority
new org.catacomb.graph.gui.DisplayStrokes(String[], double[]) may expose internal representation by storing an externally mutable object into DisplayStrokes.styleNames	MALICIOUS_CODE	EI_EXPOSE_REP2	20	Medium
new org.catacomb.graph.gui.DisplayStrokes(String[], double[]) may expose internal representation by storing an externally mutable object into DisplayStrokes.widths	MALICIOUS_CODE	EI_EXPOSE_REP2	21	Medium

org.catacomb.graph.gui.DisplayStyleSet

Bug	Category	Details	Line	Priority
org.catacomb.graph.gui.DisplayStyleSet.assignIfUnset() uses the nextDouble method of Random to generate a random integer; using nextInt is more efficient	PERFORMANCE	DM_NEXTINT_VIA_NEXTDOUBLE	186	Medium
public static org.catacomb.graph.gui.DisplayStyleSet.getIndexedWidths() may expose internal representation by returning DisplayStyleSet.widths	MALICIOUS_CODE	MS_EXPOSE_REP	119	Medium
public static org.catacomb.graph.gui.DisplayStyleSet.getStyleNames() may expose internal representation by returning DisplayStyleSet.styleNames	MALICIOUS_CODE	MS_EXPOSE_REP	123	Medium
org.catacomb.graph.gui.DisplayStyleSet.styleNames should be package protected	MALICIOUS_CODE	MS_PKGPROTECT	18	Medium
org.catacomb.graph.gui.DisplayStyleSet.widthNames should be package protected	MALICIOUS_CODE	MS_PKGPROTECT	25	Medium
org.catacomb.graph.gui.DisplayStyleSet.widths should be package protected	MALICIOUS_CODE	MS_PKGPROTECT	26	Medium
Write to static field org.catacomb.graph.gui.DisplayStyleSet.lineStyleCounter from instance method org.catacomb.graph.gui.DisplayStyleSet.assignIfUnset()	STYLE	ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD	179	Medium

org.catacomb.graph.gui.GraphContextMenu$GCMHandler

Bug	Category	Details	Line	Priority
Should org.catacomb.graph.gui.GraphContextMenu$GCMHandler be a _static_ inner class?	PERFORMANCE	SIC_INNER_SHOULD_BE_STATIC	71-79	Medium

org.catacomb.graph.gui.Iconizer

Bug	Category	Details	Line	Priority
Found reliance on default encoding in org.catacomb.graph.gui.Iconizer.readStringFromFile(File): new java.io.InputStreamReader(InputStream)	I18N	DM_DEFAULT_ENCODING	279	High

org.catacomb.graph.gui.Labellee

Bug	Category	Details	Line	Priority
org.catacomb.graph.gui.Labellee.update(double[], double[], String, Color) may expose internal representation by storing an externally mutable object into Labellee.xpts	MALICIOUS_CODE	EI_EXPOSE_REP2	25	Medium
org.catacomb.graph.gui.Labellee.update(double[], double[], String, Color) may expose internal representation by storing an externally mutable object into Labellee.ypts	MALICIOUS_CODE	EI_EXPOSE_REP2	26	Medium
Unread field: org.catacomb.graph.gui.Labellee.xpts	PERFORMANCE	URF_UNREAD_FIELD	25	Medium
Unread field: org.catacomb.graph.gui.Labellee.ypts	PERFORMANCE	URF_UNREAD_FIELD	26	Medium

org.catacomb.graph.gui.MovieDisplay$MDThreadRunner

Bug	Category	Details	Line	Priority
Should org.catacomb.graph.gui.MovieDisplay$MDThreadRunner be a _static_ inner class?	PERFORMANCE	SIC_INNER_SHOULD_BE_STATIC	327-335	Medium

org.catacomb.graph.gui.Painter

Bug	Category	Details	Line	Priority
org.catacomb.graph.gui.Painter.setColorTable(Color[]) may expose internal representation by storing an externally mutable object into Painter.colorTable	MALICIOUS_CODE	EI_EXPOSE_REP2	968	Medium

org.catacomb.graph.gui.PickHandler

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.graph.gui.PickHandler.clickListener	PERFORMANCE	URF_UNREAD_FIELD	244	Medium

org.catacomb.graph.gui.PickablePoint

Bug	Category	Details	Line	Priority
Unused field: org.catacomb.graph.gui.PickablePoint.p_style	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium
Unused field: org.catacomb.graph.gui.PickablePoint.p_tip	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium

org.catacomb.graph.gui.PickableRegion

Bug	Category	Details	Line	Priority
Invocation of toString on axb in new org.catacomb.graph.gui.PickableRegion(double[], double[], Object)	CORRECTNESS	DMI_INVOKING_TOSTRING_ON_ARRAY	36	High
org.catacomb.graph.gui.PickableRegion.getXPts() may expose internal representation by returning PickableRegion.xb	MALICIOUS_CODE	EI_EXPOSE_REP	58	Medium
org.catacomb.graph.gui.PickableRegion.getYPts() may expose internal representation by returning PickableRegion.yb	MALICIOUS_CODE	EI_EXPOSE_REP	62	Medium
new org.catacomb.graph.gui.PickableRegion(double[], double[], Object) may expose internal representation by storing an externally mutable object into PickableRegion.xb	MALICIOUS_CODE	EI_EXPOSE_REP2	43	Medium
new org.catacomb.graph.gui.PickableRegion(double[], double[], Object) may expose internal representation by storing an externally mutable object into PickableRegion.yb	MALICIOUS_CODE	EI_EXPOSE_REP2	44	Medium
org.catacomb.graph.gui.PickableRegion.setPoints(double[], double[]) may expose internal representation by storing an externally mutable object into PickableRegion.xb	MALICIOUS_CODE	EI_EXPOSE_REP2	88	Medium
org.catacomb.graph.gui.PickableRegion.setPoints(double[], double[]) may expose internal representation by storing an externally mutable object into PickableRegion.yb	MALICIOUS_CODE	EI_EXPOSE_REP2	89	Medium
Unused field: org.catacomb.graph.gui.PickableRegion.label	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium

org.catacomb.graph.gui.PointPainter

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.graph.gui.PointPainter.g	PERFORMANCE	URF_UNREAD_FIELD	15	Medium

org.catacomb.graph.gui.RollHandler

Bug	Category	Details	Line	Priority
Unused field: org.catacomb.graph.gui.RollHandler.aaCache	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium

org.catacomb.graph.gui.WorldTransform

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.graph.gui.WorldTransform.DBIG; should this field be static?	PERFORMANCE	SS_SHOULD_BE_STATIC	39	Medium

org.catacomb.icon.splash.Splasher

Bug	Category	Details	Line	Priority
Found reliance on default encoding in org.catacomb.icon.splash.Splasher.readInputStream(InputStream): new java.io.InputStreamReader(InputStream)	I18N	DM_DEFAULT_ENCODING	116	High
Unwritten field: org.catacomb.icon.splash.Splasher.splasher	CORRECTNESS	UWF_UNWRITTEN_FIELD	27	Medium

org.catacomb.interlish.content.BasicTouchTime

Bug	Category	Details	Line	Priority
Write to static field org.catacomb.interlish.content.BasicTouchTime.globalCounter from instance method new org.catacomb.interlish.content.BasicTouchTime()	STYLE	ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD	18	Medium
Write to static field org.catacomb.interlish.content.BasicTouchTime.globalCounter from instance method org.catacomb.interlish.content.BasicTouchTime.now()	STYLE	ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD	24	Medium

org.catacomb.interlish.content.ColorTable

Bug	Category	Details	Line	Priority
org.catacomb.interlish.content.ColorTable.getColors() may expose internal representation by returning ColorTable.colors	MALICIOUS_CODE	EI_EXPOSE_REP	72	Medium

org.catacomb.interlish.content.KeyedMultiList

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.interlish.content.KeyedMultiList.itemClass	PERFORMANCE	URF_UNREAD_FIELD	24	Medium

org.catacomb.interlish.content.Polypoint

Bug	Category	Details	Line	Priority
org.catacomb.interlish.content.Polypoint.getXPts() may expose internal representation by returning Polypoint.xpts	MALICIOUS_CODE	EI_EXPOSE_REP	80	Medium
org.catacomb.interlish.content.Polypoint.getYPts() may expose internal representation by returning Polypoint.ypts	MALICIOUS_CODE	EI_EXPOSE_REP	84	Medium
new org.catacomb.interlish.content.Polypoint(double[], double[], int) may expose internal representation by storing an externally mutable object into Polypoint.xpts	MALICIOUS_CODE	EI_EXPOSE_REP2	32	Medium
new org.catacomb.interlish.content.Polypoint(double[], double[], int) may expose internal representation by storing an externally mutable object into Polypoint.ypts	MALICIOUS_CODE	EI_EXPOSE_REP2	33	Medium
org.catacomb.interlish.content.Polypoint.setXpts(double[]) may expose internal representation by storing an externally mutable object into Polypoint.xpts	MALICIOUS_CODE	EI_EXPOSE_REP2	71	Medium
org.catacomb.interlish.content.Polypoint.setYpts(double[]) may expose internal representation by storing an externally mutable object into Polypoint.ypts	MALICIOUS_CODE	EI_EXPOSE_REP2	76	Medium
org.catacomb.interlish.content.Polypoint.p_closureNames should be package protected	MALICIOUS_CODE	MS_PKGPROTECT	18	Medium

org.catacomb.interlish.content.QuantifiedListValue

Bug	Category	Details	Line	Priority
org.catacomb.interlish.content.QuantifiedListValue.getItems() may expose internal representation by returning QuantifiedListValue.items	MALICIOUS_CODE	EI_EXPOSE_REP	124	Medium
org.catacomb.interlish.content.QuantifiedListValue.getNameValueItems() may expose internal representation by returning QuantifiedListValue.items	MALICIOUS_CODE	EI_EXPOSE_REP	128	Medium
new org.catacomb.interlish.content.QuantifiedListValue(NVPair[]) may expose internal representation by storing an externally mutable object into QuantifiedListValue.items	MALICIOUS_CODE	EI_EXPOSE_REP2	25	Medium

org.catacomb.interlish.content.RShape

Bug	Category	Details	Line	Priority
org.catacomb.interlish.content.RShape.getXPts() may expose internal representation by returning RShape.xpts	MALICIOUS_CODE	EI_EXPOSE_REP	36	Medium
org.catacomb.interlish.content.RShape.getYPts() may expose internal representation by returning RShape.ypts	MALICIOUS_CODE	EI_EXPOSE_REP	40	Medium
new org.catacomb.interlish.content.RShape(double[], double[], double, SColor, SColor, int) may expose internal representation by storing an externally mutable object into RShape.xpts	MALICIOUS_CODE	EI_EXPOSE_REP2	26	Medium
new org.catacomb.interlish.content.RShape(double[], double[], double, SColor, SColor, int) may expose internal representation by storing an externally mutable object into RShape.ypts	MALICIOUS_CODE	EI_EXPOSE_REP2	27	Medium

org.catacomb.interlish.interact.CodgerTask

Bug	Category	Details	Line	Priority
org.catacomb.interlish.interact.CodgerTask.getExports() may expose internal representation by returning CodgerTask.exports	MALICIOUS_CODE	EI_EXPOSE_REP	22	Medium
new org.catacomb.interlish.interact.CodgerTask(File, String[]) may expose internal representation by storing an externally mutable object into CodgerTask.exports	MALICIOUS_CODE	EI_EXPOSE_REP2	14	Medium

org.catacomb.interlish.lang.U

Bug	Category	Details	Line	Priority
Possible null pointer dereference of s1 in org.catacomb.interlish.lang.U.same(Object, Object)	CORRECTNESS	NP_NULL_ON_SOME_PATH	22	Medium

org.catacomb.interlish.reflect.Narrower

Bug	Category	Details	Line	Priority
org.catacomb.interlish.reflect.Narrower.narrow(String, Object) invokes inefficient Boolean constructor; use Boolean.valueOf(...) instead	PERFORMANCE	DM_BOOLEAN_CTOR	28	Medium
org.catacomb.interlish.reflect.Narrower.narrow(String, Object) invokes inefficient new Integer(int) constructor; use Integer.valueOf(int) instead	PERFORMANCE	DM_NUMBER_CTOR	25	Medium

org.catacomb.interlish.reflect.ObjectBuilder

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.interlish.reflect.ObjectBuilder.workElt	PERFORMANCE	URF_UNREAD_FIELD	49	Medium

org.catacomb.interlish.reflect.ReflectionConstructor

Bug	Category	Details	Line	Priority
org.catacomb.interlish.reflect.ReflectionConstructor.setField(Object, String, Object) invokes inefficient Boolean constructor; use Boolean.valueOf(...) instead	PERFORMANCE	DM_BOOLEAN_CTOR	373	Medium
org.catacomb.interlish.reflect.ReflectionConstructor.setField(Object, String, Object) invokes inefficient new Integer(int) constructor; use Integer.valueOf(int) instead	PERFORMANCE	DM_NUMBER_CTOR	376	Medium
Exception is caught when Exception is not thrown in org.catacomb.interlish.reflect.ReflectionConstructor.setArrayField(Object, Field, ArrayList)	STYLE	REC_CATCH_EXCEPTION	516	Medium
Unread field: org.catacomb.interlish.reflect.ReflectionConstructor.search	PERFORMANCE	URF_UNREAD_FIELD	27	Medium

org.catacomb.interlish.report.Message

Bug	Category	Details	Line	Priority
org.catacomb.interlish.report.Message.getBody() may expose internal representation by returning Message.body	MALICIOUS_CODE	EI_EXPOSE_REP	48	Medium
new org.catacomb.interlish.report.Message(String, String[]) may expose internal representation by storing an externally mutable object into Message.body	MALICIOUS_CODE	EI_EXPOSE_REP2	23	Medium
Unread field: org.catacomb.interlish.report.Message.timestamp	PERFORMANCE	URF_UNREAD_FIELD	24	Medium

org.catacomb.interlish.report.UserLog

Bug	Category	Details	Line	Priority
org.catacomb.interlish.report.UserLog.log should be package protected	MALICIOUS_CODE	MS_PKGPROTECT	Not available	Medium

org.catacomb.interlish.service.AppPersist

Bug	Category	Details	Line	Priority
Write to static field org.catacomb.interlish.service.AppPersist.applicationName from instance method org.catacomb.interlish.service.AppPersist.setApplicationName(String)	STYLE	ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD	82	High

org.catacomb.interlish.service.Env

Bug	Category	Details	Line	Priority
org.catacomb.interlish.service.Env.context should be package protected	MALICIOUS_CODE	MS_PKGPROTECT	12	Medium

org.catacomb.interlish.structure.InfoMessage

Bug	Category	Details	Line	Priority
org.catacomb.interlish.structure.InfoMessage.textLevels should be moved out of an interface and made package protected	MALICIOUS_CODE	MS_OOI_PKGPROTECT	12	Medium

org.catacomb.interlish.util.JUtil

Bug	Category	Details	Line	Priority
Dead store to logger in org.catacomb.interlish.util.JUtil.copyBinaryResource(Logger, String, File)	STYLE	DLS_DEAD_LOCAL_STORE	150	High
Found reliance on default encoding in org.catacomb.interlish.util.JUtil.readInputStream(Logger, InputStream): new java.io.InputStreamReader(InputStream)	I18N	DM_DEFAULT_ENCODING	125	High
org.catacomb.interlish.util.JUtil.copyBinaryResource(Logger, String, File) may fail to clean up java.io.InputStream on checked exception	EXPERIMENTAL	OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE	161	Medium
org.catacomb.interlish.util.JUtil.copyBinaryResource(Logger, String, File) may fail to clean up java.io.OutputStream on checked exception	EXPERIMENTAL	OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE	163	Medium
org.catacomb.interlish.util.JUtil.unpackJar(File, File) may fail to clean up java.io.OutputStream on checked exception	EXPERIMENTAL	OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE	269	Medium
org.catacomb.interlish.util.JUtil.extractJarResources(Object, String, File) may fail to close stream	BAD_PRACTICE	OS_OPEN_STREAM	297	Medium
org.catacomb.interlish.util.JUtil.extractJarResources(Object, String, File) may fail to close stream	BAD_PRACTICE	OS_OPEN_STREAM	320	Medium
org.catacomb.interlish.util.JUtil.unpackJar(File, File) may fail to close stream	BAD_PRACTICE	OS_OPEN_STREAM	251	Medium
exceptional return value of java.io.File.mkdirs() ignored in org.catacomb.interlish.util.JUtil.extractJarResources(Object, String, File)	BAD_PRACTICE	RV_RETURN_VALUE_IGNORED_BAD_PRACTICE	304	Medium
exceptional return value of java.io.File.mkdir() ignored in org.catacomb.interlish.util.JUtil.extractResources(Logger, String, File)	BAD_PRACTICE	RV_RETURN_VALUE_IGNORED_BAD_PRACTICE	204	Medium
exceptional return value of java.io.File.mkdirs() ignored in org.catacomb.interlish.util.JUtil.unpackJar(File, File)	BAD_PRACTICE	RV_RETURN_VALUE_IGNORED_BAD_PRACTICE	258	Medium

org.catacomb.movie.gif.AnimatedGifEncoder

Bug	Category	Details	Line	Priority
Vacuous ior operation on AnimatedGifEncoder.java:[line 388] in org.catacomb.movie.gif.AnimatedGifEncoder.writeGraphicCtrlExt()	STYLE	INT_VACUOUS_BIT_OPERATION	388	Medium

org.catacomb.movie.gif.ByteAccumulator

Bug	Category	Details	Line	Priority
Found reliance on default encoding in org.catacomb.movie.gif.ByteAccumulator.appendString(String): String.getBytes()	I18N	DM_DEFAULT_ENCODING	94	High
org.catacomb.movie.gif.ByteAccumulator.getData() may expose internal representation by returning ByteAccumulator.ba	MALICIOUS_CODE	EI_EXPOSE_REP	58	Medium
new org.catacomb.movie.gif.ByteAccumulator(byte[]) may expose internal representation by storing an externally mutable object into ByteAccumulator.ba	MALICIOUS_CODE	EI_EXPOSE_REP2	26	Medium

org.catacomb.movie.gif.NeuQuant

Bug	Category	Details	Line	Priority
org.catacomb.movie.gif.NeuQuant.alterneigh(int, int, int, int, int) might ignore java.lang.Exception	BAD_PRACTICE	DE_MIGHT_IGNORE	405	Medium
new org.catacomb.movie.gif.NeuQuant(byte[], int, int) may expose internal representation by storing an externally mutable object into NeuQuant.thepicture	MALICIOUS_CODE	EI_EXPOSE_REP2	116	Medium
Computation of average could overflow in org.catacomb.movie.gif.NeuQuant.inxbuild()	STYLE	IM_AVERAGE_COMPUTATION_COULD_OVERFLOW	187	Medium

org.catacomb.numeric.data.AnimSlice

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.numeric.data.AnimSlice.times	PERFORMANCE	URF_UNREAD_FIELD	29	Medium

org.catacomb.numeric.data.AsciiIO

Bug	Category	Details	Line	Priority
Found reliance on default encoding in org.catacomb.numeric.data.AsciiIO.readTable(File): new java.io.FileReader(File)	I18N	DM_DEFAULT_ENCODING	23	High
Dereference of the result of readLine() without nullcheck in org.catacomb.numeric.data.AsciiIO.readTable(File)	STYLE	NP_DEREFERENCE_OF_READLINE_VALUE	26	Medium
org.catacomb.numeric.data.AsciiIO.readTable(File) may fail to close stream	BAD_PRACTICE	OS_OPEN_STREAM	23	Medium

org.catacomb.numeric.data.DDSlice

Bug	Category	Details	Line	Priority
org.catacomb.numeric.data.DDSlice.getDData() may expose internal representation by returning DDSlice.data	MALICIOUS_CODE	EI_EXPOSE_REP	74	Medium
org.catacomb.numeric.data.DDSlice.getNames() may expose internal representation by returning DDSlice.elementNames	MALICIOUS_CODE	EI_EXPOSE_REP	36	Medium
new org.catacomb.numeric.data.DDSlice(BlockStack, String, Field, String, String, String[]) may expose internal representation by storing an externally mutable object into DDSlice.elementNames	MALICIOUS_CODE	EI_EXPOSE_REP2	24	Medium

org.catacomb.numeric.data.DDSubSlice

Bug	Category	Details	Line	Priority
org.catacomb.numeric.data.DDSubSlice.getData() may expose internal representation by returning DDSubSlice.data	MALICIOUS_CODE	EI_EXPOSE_REP	71	Medium

org.catacomb.numeric.data.DSlice

Bug	Category	Details	Line	Priority
org.catacomb.numeric.data.DSlice.getData() may expose internal representation by returning DSlice.data	MALICIOUS_CODE	EI_EXPOSE_REP	53	Medium

org.catacomb.numeric.data.DVector

Bug	Category	Details	Line	Priority
org.catacomb.numeric.data.DVector.getData() may expose internal representation by returning DVector.dat	MALICIOUS_CODE	EI_EXPOSE_REP	40	Medium

org.catacomb.numeric.data.DataSetArray

Bug	Category	Details	Line	Priority
org.catacomb.numeric.data.DataSetArray.getDataSets() may expose internal representation by returning DataSetArray.bufdsa	MALICIOUS_CODE	EI_EXPOSE_REP	67	Medium

org.catacomb.numeric.data.DataSlice

Bug	Category	Details	Line	Priority
Redundant nullcheck of org.catacomb.numeric.data.DataSlice.subslice which is known to be null in org.catacomb.numeric.data.DataSlice.getVector()	STYLE	RCN_REDUNDANT_NULLCHECK_OF_NULL_VALUE	258	Medium
org.catacomb.numeric.data.DataSlice.resolve(HashMap) makes inefficient use of keySet iterator instead of entrySet iterator	PERFORMANCE	WMI_WRONG_MAP_ITERATOR	94	Medium

org.catacomb.numeric.data.DataTable

Bug	Category	Details	Line	Priority
org.catacomb.numeric.data.DataTable.getColumns() may expose internal representation by returning DataTable.columns	MALICIOUS_CODE	EI_EXPOSE_REP	106	Medium
org.catacomb.numeric.data.DataTable.getHeadings() may expose internal representation by returning DataTable.headings	MALICIOUS_CODE	EI_EXPOSE_REP	50	Medium
org.catacomb.numeric.data.DataTable.setHeadings(String[]) may expose internal representation by storing an externally mutable object into DataTable.headings	MALICIOUS_CODE	EI_EXPOSE_REP2	40	Medium

org.catacomb.numeric.data.DoubleArray

Bug	Category	Details	Line	Priority
org.catacomb.numeric.data.DoubleArray.getData() may expose internal representation by returning DoubleArray.data	MALICIOUS_CODE	EI_EXPOSE_REP	27	Medium
new org.catacomb.numeric.data.DoubleArray(double[]) may expose internal representation by storing an externally mutable object into DoubleArray.data	MALICIOUS_CODE	EI_EXPOSE_REP2	17	Medium

org.catacomb.numeric.data.EventSequence

Bug	Category	Details	Line	Priority
org.catacomb.numeric.data.EventSequence.getChannels() may expose internal representation by returning EventSequence.channels	MALICIOUS_CODE	EI_EXPOSE_REP	56	Medium
org.catacomb.numeric.data.EventSequence.getTimes() may expose internal representation by returning EventSequence.times	MALICIOUS_CODE	EI_EXPOSE_REP	60	Medium

org.catacomb.numeric.data.FloatRow

Bug	Category	Details	Line	Priority
org.catacomb.numeric.data.FloatRow.getValue() may expose internal representation by returning FloatRow.value	MALICIOUS_CODE	EI_EXPOSE_REP	26	Medium
new org.catacomb.numeric.data.FloatRow(double[]) may expose internal representation by storing an externally mutable object into FloatRow.value	MALICIOUS_CODE	EI_EXPOSE_REP2	14	Medium

org.catacomb.numeric.data.FloatVector

Bug	Category	Details	Line	Priority
org.catacomb.numeric.data.FloatVector.getValue() may expose internal representation by returning FloatVector.value	MALICIOUS_CODE	EI_EXPOSE_REP	29	Medium
new org.catacomb.numeric.data.FloatVector(String, double[]) may expose internal representation by storing an externally mutable object into FloatVector.value	MALICIOUS_CODE	EI_EXPOSE_REP2	15	Medium

org.catacomb.numeric.data.NumDataSetFactory

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.numeric.data.NumDataSetFactory.makes	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.numeric.data.NumDataStore

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.numeric.data.NumDataStore.nrep	PERFORMANCE	URF_UNREAD_FIELD	47	Medium

org.catacomb.numeric.data.SimpleSpriteBlock

Bug	Category	Details	Line	Priority
Unread public/protected field: org.catacomb.numeric.data.SimpleSpriteBlock.position	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	27	Medium
Unread public/protected field: org.catacomb.numeric.data.SimpleSpriteBlock.time	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	26	Medium
Unread public/protected field: org.catacomb.numeric.data.SimpleSpriteBlock.wall	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	30	Medium

org.catacomb.numeric.data.XYVectorScene

Bug	Category	Details	Line	Priority
org.catacomb.numeric.data.XYVectorScene.getXPts() may expose internal representation by returning XYVectorScene.xpts	MALICIOUS_CODE	EI_EXPOSE_REP	22	Medium
org.catacomb.numeric.data.XYVectorScene.getYPts() may expose internal representation by returning XYVectorScene.ypts	MALICIOUS_CODE	EI_EXPOSE_REP	26	Medium
new org.catacomb.numeric.data.XYVectorScene(double[], double[], int) may expose internal representation by storing an externally mutable object into XYVectorScene.xpts	MALICIOUS_CODE	EI_EXPOSE_REP2	15	Medium
new org.catacomb.numeric.data.XYVectorScene(double[], double[], int) may expose internal representation by storing an externally mutable object into XYVectorScene.ypts	MALICIOUS_CODE	EI_EXPOSE_REP2	16	Medium

org.catacomb.numeric.difnet.CellPoint

Bug	Category	Details	Line	Priority
Unread public/protected field: org.catacomb.numeric.difnet.CellPoint.umark	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	45	Medium
Unread public/protected field: org.catacomb.numeric.difnet.CellPoint.wmark	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	46	Medium
Unused public or protected field: org.catacomb.numeric.difnet.CellPoint.dgx	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.catacomb.numeric.difnet.CellPoint.dgy	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.catacomb.numeric.difnet.CellPoint.index	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.catacomb.numeric.difnet.CellPoint.name	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.catacomb.numeric.difnet.CellPoint.parentIndex	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.catacomb.numeric.difnet.CellPoint.wcount	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.numeric.difnet.calc.NetMapNode

Bug	Category	Details	Line	Priority
Unused field: org.catacomb.numeric.difnet.calc.NetMapNode.capacitance	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium

org.catacomb.numeric.difnet.calc.OrderedNetMap

Bug	Category	Details	Line	Priority
The method name org.catacomb.numeric.difnet.calc.OrderedNetMap.Sp(String) doesn't start with a lower case letter	BAD_PRACTICE	NM_METHOD_NAMING_CONVENTION	159-160	Medium

org.catacomb.numeric.difnet.model.BasicNetRecorder

Bug	Category	Details	Line	Priority
org.catacomb.numeric.difnet.model.BasicNetRecorder.getRecorderLabels() may expose internal representation by returning BasicNetRecorder.recLabels	MALICIOUS_CODE	EI_EXPOSE_REP	68	Medium

org.catacomb.numeric.difnet.model.BasicNetState

Bug	Category	Details	Line	Priority
org.catacomb.numeric.difnet.model.BasicNetState.getLinks() may expose internal representation by returning BasicNetState.links	MALICIOUS_CODE	EI_EXPOSE_REP	41	Medium
org.catacomb.numeric.difnet.model.BasicNetState.getNodes() may expose internal representation by returning BasicNetState.nodes	MALICIOUS_CODE	EI_EXPOSE_REP	36	Medium
new org.catacomb.numeric.difnet.model.BasicNetState(BasicNetStructure, BasicStateNode[], BasicStateLink[]) may expose internal representation by storing an externally mutable object into BasicNetState.links	MALICIOUS_CODE	EI_EXPOSE_REP2	30	Medium
new org.catacomb.numeric.difnet.model.BasicNetState(BasicNetStructure, BasicStateNode[], BasicStateLink[]) may expose internal representation by storing an externally mutable object into BasicNetState.nodes	MALICIOUS_CODE	EI_EXPOSE_REP2	29	Medium
org.catacomb.numeric.difnet.model.BasicNetState.setLinks(BasicStateLink[]) may expose internal representation by storing an externally mutable object into BasicNetState.links	MALICIOUS_CODE	EI_EXPOSE_REP2	58	Medium
org.catacomb.numeric.difnet.model.BasicNetState.setNodes(BasicStateNode[]) may expose internal representation by storing an externally mutable object into BasicNetState.nodes	MALICIOUS_CODE	EI_EXPOSE_REP2	54	Medium
Write to static field org.catacomb.numeric.difnet.model.BasicNetState.istat from instance method org.catacomb.numeric.difnet.model.BasicNetState.setError()	STYLE	ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD	78	Medium
Write to static field org.catacomb.numeric.difnet.model.BasicNetState.istat from instance method org.catacomb.numeric.difnet.model.BasicNetState.setOK()	STYLE	ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD	82	Medium
Unread field: org.catacomb.numeric.difnet.model.BasicNetState.structure	PERFORMANCE	URF_UNREAD_FIELD	28	Medium

org.catacomb.numeric.difnet.model.BasicNetStructure

Bug	Category	Details	Line	Priority
org.catacomb.numeric.difnet.model.BasicNetStructure.getLinks() may expose internal representation by returning BasicNetStructure.links	MALICIOUS_CODE	EI_EXPOSE_REP	29	Medium
org.catacomb.numeric.difnet.model.BasicNetStructure.getNodes() may expose internal representation by returning BasicNetStructure.nodes	MALICIOUS_CODE	EI_EXPOSE_REP	24	Medium
org.catacomb.numeric.difnet.model.BasicNetStructure.setLinks(BasicStructureLink[]) may expose internal representation by storing an externally mutable object into BasicNetStructure.links	MALICIOUS_CODE	EI_EXPOSE_REP2	40	Medium
org.catacomb.numeric.difnet.model.BasicNetStructure.setNodes(BasicStructureNode[]) may expose internal representation by storing an externally mutable object into BasicNetStructure.nodes	MALICIOUS_CODE	EI_EXPOSE_REP2	35	Medium

org.catacomb.numeric.difnet.model.BasicStateNode

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.numeric.difnet.model.BasicStateNode.current	PERFORMANCE	URF_UNREAD_FIELD	54	Medium

org.catacomb.numeric.difnet.model.BasicStructureLink

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.numeric.difnet.model.BasicStructureLink.flip	PERFORMANCE	URF_UNREAD_FIELD	36	Medium
Unused field: org.catacomb.numeric.difnet.model.BasicStructureLink.area	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium

org.catacomb.numeric.math.DiagonalBlockMatrix

Bug	Category	Details	Line	Priority
The method name org.catacomb.numeric.math.DiagonalBlockMatrix.Sp(String) doesn't start with a lower case letter	BAD_PRACTICE	NM_METHOD_NAMING_CONVENTION	23-24	Medium

org.catacomb.numeric.math.Matrix

Bug	Category	Details	Line	Priority
Class org.catacomb.numeric.math.Matrix implements Cloneable but does not define or use clone method	BAD_PRACTICE	CN_IDIOM	12-647	Medium
new org.catacomb.numeric.math.Matrix(double[][]) may expose internal representation by storing an externally mutable object into Matrix.a	MALICIOUS_CODE	EI_EXPOSE_REP2	25	Medium
The method name org.catacomb.numeric.math.Matrix.Sp(String) doesn't start with a lower case letter	BAD_PRACTICE	NM_METHOD_NAMING_CONVENTION	44-45	Medium

org.catacomb.numeric.mesh.DifMesh

Bug	Category	Details	Line	Priority
org.catacomb.numeric.mesh.DifMesh.getPoints() may expose internal representation by returning DifMesh.points	MALICIOUS_CODE	EI_EXPOSE_REP	22	Medium
org.catacomb.numeric.mesh.DifMesh.getRemeshMap() may expose internal representation by returning DifMesh.indexTable	MALICIOUS_CODE	EI_EXPOSE_REP	34	Medium
org.catacomb.numeric.mesh.DifMesh.setPoints(MeshPoint[]) may expose internal representation by storing an externally mutable object into DifMesh.points	MALICIOUS_CODE	EI_EXPOSE_REP2	17	Medium

org.catacomb.numeric.mesh.DifMeshBuilder

Bug	Category	Details	Line	Priority
Unused field: org.catacomb.numeric.mesh.DifMeshBuilder.dmesh	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium

org.catacomb.numeric.mesh.DifMeshPoint

Bug	Category	Details	Line	Priority
org.catacomb.numeric.mesh.DifMeshPoint.getNeighbors() may expose internal representation by returning DifMeshPoint.nbrs	MALICIOUS_CODE	EI_EXPOSE_REP	47	Medium

org.catacomb.numeric.mesh.Discretizer

Bug	Category	Details	Line	Priority
The method name org.catacomb.numeric.mesh.Discretizer.Sp(String) doesn't start with a lower case letter	BAD_PRACTICE	NM_METHOD_NAMING_CONVENTION	371-372	Medium

org.catacomb.report.E

Bug	Category	Details	Line	Priority
org.catacomb.report.E.time0 should be package protected	MALICIOUS_CODE	MS_PKGPROTECT	7	Medium
org.catacomb.report.E.getMediumSource() concatenates strings using + in a loop	PERFORMANCE	SBSC_USE_STRINGBUFFER_CONCATENATION	252	Medium

org.catacomb.serial.jar.CustomJarWriter

Bug	Category	Details	Line	Priority
Found reliance on default encoding in org.catacomb.serial.jar.CustomJarWriter.write(File): new java.io.OutputStreamWriter(OutputStream)	I18N	DM_DEFAULT_ENCODING	90	High
org.catacomb.serial.jar.CustomJarWriter.write(File) may fail to clean up java.io.InputStream on checked exception	EXPERIMENTAL	OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE	69	Medium

org.catacomb.serial.om.OmElement

Bug	Category	Details	Line	Priority
org.catacomb.serial.om.OmElement.toString() concatenates strings using + in a loop	PERFORMANCE	SBSC_USE_STRINGBUFFER_CONCATENATION	38	Medium

org.catacomb.serial.quickxml.Element

Bug	Category	Details	Line	Priority
org.catacomb.serial.quickxml.Element.getElements() may expose internal representation by returning Element.elements	MALICIOUS_CODE	EI_EXPOSE_REP	216	Medium

org.catacomb.serial.quickxml.XMLFileElement

Bug	Category	Details	Line	Priority
exceptional return value of java.io.File.mkdirs() ignored in new org.catacomb.serial.quickxml.XMLFileElement(File, String)	BAD_PRACTICE	RV_RETURN_VALUE_IGNORED_BAD_PRACTICE	21	Medium

org.catacomb.serial.state.FieldState

Bug	Category	Details	Line	Priority
Unread public/protected field: org.catacomb.serial.state.FieldState.name	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	13	Medium
Unread public/protected field: org.catacomb.serial.state.FieldState.value	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	14	Medium

org.catacomb.serial.state.MainState

Bug	Category	Details	Line	Priority
Unread public/protected field: org.catacomb.serial.state.MainState.mainInstance	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	13	Medium

org.catacomb.serial.state.MainType

Bug	Category	Details	Line	Priority
Unread public/protected field: org.catacomb.serial.state.MainType.mainInstance	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	12	Medium

org.catacomb.serial.state.ModelState

Bug	Category	Details	Line	Priority
Unread public/protected field: org.catacomb.serial.state.ModelState.mainState	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	27	Medium
Unread public/protected field: org.catacomb.serial.state.ModelState.mainType	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	22	Medium
Unread public/protected field: org.catacomb.serial.state.ModelState.typeArchive	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	17	Medium

org.catacomb.serial.state.TypeClass

Bug	Category	Details	Line	Priority
Unused public or protected field: org.catacomb.serial.state.TypeClass.catalogID	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.catacomb.serial.xml.XMLReader

Bug	Category	Details	Line	Priority
Redundant nullcheck of child, which is known to be non-null in org.catacomb.serial.xml.XMLReader.readFieldIntoParent(XMLTokenizer, Object, XMLToken)	STYLE	RCN_REDUNDANT_NULLCHECK_OF_NONNULL_VALUE	254	Medium

org.catacomb.serial.xml.XMLToken

Bug	Category	Details	Line	Priority
org.catacomb.serial.xml.XMLToken.setAttributes(String[]) may expose internal representation by storing an externally mutable object into XMLToken.attNV	MALICIOUS_CODE	EI_EXPOSE_REP2	123	Medium
org.catacomb.serial.xml.XMLToken.toString() concatenates strings using + in a loop	PERFORMANCE	SBSC_USE_STRINGBUFFER_CONCATENATION	97	Medium

org.catacomb.serial.xml.XMLTokenizer

Bug	Category	Details	Line	Priority
org.catacomb.serial.xml.XMLTokenizer.nextToken() concatenates strings using + in a loop	PERFORMANCE	SBSC_USE_STRINGBUFFER_CONCATENATION	190	Medium

org.catacomb.util.ArrayUtil

Bug	Category	Details	Line	Priority
Complicated, subtle or wrong increment in for-loop org.catacomb.util.ArrayUtil.avg(double[][])	STYLE	QF_QUESTIONABLE_FOR_LOOP	157	Medium
Complicated, subtle or wrong increment in for-loop org.catacomb.util.ArrayUtil.sd(double[][])	STYLE	QF_QUESTIONABLE_FOR_LOOP	177	Medium

org.catacomb.util.Base64

Bug	Category	Details	Line	Priority
Found reliance on default encoding in org.catacomb.util.Base64.decode(String): new String(byte[], int, int)	I18N	DM_DEFAULT_ENCODING	92	High

org.catacomb.util.CRC

Bug	Category	Details	Line	Priority
Found reliance on default encoding in org.catacomb.util.CRC.getCRCString(String): String.getBytes()	I18N	DM_DEFAULT_ENCODING	12	High

org.catacomb.util.ColorDef

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.catacomb.util.ColorDef.value	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	28	Medium

org.catacomb.util.ColorUtil

Bug	Category	Details	Line	Priority
Possible null pointer dereference of obj in org.catacomb.util.ColorUtil.parseColor(String)	CORRECTNESS	NP_NULL_ON_SOME_PATH	116	High

org.catacomb.util.Diff$change

Bug	Category	Details	Line	Priority
The class name org.catacomb.util.Diff$change doesn't start with an upper case letter	BAD_PRACTICE	NM_CLASS_NAMING_CONVENTION	559-566	Medium

org.catacomb.util.Diff$file_data

Bug	Category	Details	Line	Priority
new org.catacomb.util.Diff$file_data(Diff, Object[], Hashtable) invokes inefficient new Integer(int) constructor; use Integer.valueOf(int) instead	PERFORMANCE	DM_NUMBER_CTOR	798	Medium

org.catacomb.util.DiffPrint

Bug	Category	Details	Line	Priority
Found reliance on default encoding in org.catacomb.util.DiffPrint.slurp(String): new java.io.FileReader(String)	I18N	DM_DEFAULT_ENCODING	552	High
org.catacomb.util.DiffPrint.slurp(String) may fail to close stream	BAD_PRACTICE	OS_OPEN_STREAM	552	Medium
Switch statement found in org.catacomb.util.DiffPrint.main(String[]) where default case is missing	STYLE	SF_SWITCH_NO_DEFAULT	575-583	Medium

org.catacomb.util.DiffPrint$Base

Bug	Category	Details	Line	Priority
Found reliance on default encoding in org.catacomb.util.DiffPrint$Base.setupOutput(): new java.io.OutputStreamWriter(OutputStream)	I18N	DM_DEFAULT_ENCODING	79	High

org.catacomb.util.DirRef

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.util.DirRef.dirName	PERFORMANCE	URF_UNREAD_FIELD	19	Medium

org.catacomb.util.FileAccumulator

Bug	Category	Details	Line	Priority
Found reliance on default encoding in org.catacomb.util.FileAccumulator.saveJar(File): new java.io.OutputStreamWriter(OutputStream)	I18N	DM_DEFAULT_ENCODING	87	High
org.catacomb.util.FileAccumulator.saveJar(File) may fail to close stream	BAD_PRACTICE	OS_OPEN_STREAM	88	Medium

org.catacomb.util.FileUtil

Bug	Category	Details	Line	Priority
Invocation of toString on ba in org.catacomb.util.FileUtil.writeByteArrayToFile(byte[], File)	CORRECTNESS	DMI_INVOKING_TOSTRING_ON_ARRAY	134	Medium
Found reliance on default encoding in org.catacomb.util.FileUtil.readFirstLine(File): new java.io.InputStreamReader(InputStream)	I18N	DM_DEFAULT_ENCODING	201	High
Found reliance on default encoding in org.catacomb.util.FileUtil.readStringFromFile(File): new java.io.InputStreamReader(InputStream)	I18N	DM_DEFAULT_ENCODING	66	High
Found reliance on default encoding in org.catacomb.util.FileUtil.writeStringToFile(String, File): new java.io.OutputStreamWriter(OutputStream)	I18N	DM_DEFAULT_ENCODING	96	High
org.catacomb.util.FileUtil.copyFile(File, File) may fail to clean up java.io.InputStream on checked exception	EXPERIMENTAL	OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE	143	Medium
org.catacomb.util.FileUtil.copyFile(File, File) may fail to clean up java.io.OutputStream on checked exception	EXPERIMENTAL	OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE	144	Medium
org.catacomb.util.FileUtil.readHeader(File, int) may fail to clean up java.io.InputStream on checked exception	EXPERIMENTAL	OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE	19	Medium
org.catacomb.util.FileUtil.readBytes(File) may fail to close stream	BAD_PRACTICE	OS_OPEN_STREAM	38	Medium
org.catacomb.util.FileUtil.writeByteArrayToFile(byte[], File) may fail to close stream	BAD_PRACTICE	OS_OPEN_STREAM	130	Medium
Nullcheck of f at line 89 of value previously dereferenced in org.catacomb.util.FileUtil.writeStringToFile(String, File)	CORRECTNESS	RCN_REDUNDANT_NULLCHECK_WOULD_HAVE_BEEN_A_NPE	87	Medium
Exception is caught when Exception is not thrown in org.catacomb.util.FileUtil.copyFile(File, File)	STYLE	REC_CATCH_EXCEPTION	154	Medium
exceptional return value of java.io.File.delete() ignored in org.catacomb.util.FileUtil.clearCache(File)	BAD_PRACTICE	RV_RETURN_VALUE_IGNORED_BAD_PRACTICE	301	Medium
exceptional return value of java.io.File.delete() ignored in org.catacomb.util.FileUtil.deleteDir(File)	BAD_PRACTICE	RV_RETURN_VALUE_IGNORED_BAD_PRACTICE	275	Medium
exceptional return value of java.io.File.mkdir() ignored in org.catacomb.util.FileUtil.getTempFolder()	BAD_PRACTICE	RV_RETURN_VALUE_IGNORED_BAD_PRACTICE	288	Medium

org.catacomb.util.NetUtil

Bug	Category	Details	Line	Priority
Found reliance on default encoding in org.catacomb.util.NetUtil.readStringFromURL(URL, ProgressReport): new java.io.InputStreamReader(InputStream)	I18N	DM_DEFAULT_ENCODING	83	High
org.catacomb.util.NetUtil.readBytes(URL) may fail to close stream	BAD_PRACTICE	OS_OPEN_STREAM	39	Medium
org.catacomb.util.NetUtil.readStringFromURL(URL, ProgressReport) may fail to close stream	BAD_PRACTICE	OS_OPEN_STREAM	83	Medium

org.catacomb.util.StringTree

Bug	Category	Details	Line	Priority
Unread field: org.catacomb.util.StringTree.exclude	PERFORMANCE	URF_UNREAD_FIELD	20	Medium

org.catacomb.util.StringUtil

Bug	Category	Details	Line	Priority
Found reliance on default encoding in org.catacomb.util.StringUtil.regularize(String): String.getBytes()	I18N	DM_DEFAULT_ENCODING	39	High

org.textensor.report.Debug

Bug	Category	Details	Line	Priority
org.textensor.report.Debug.dump(String, double[]) concatenates strings using + in a loop	PERFORMANCE	SBSC_USE_STRINGBUFFER_CONCATENATION	12	Medium

org.textensor.report.E

Bug	Category	Details	Line	Priority
Invocation of toString on labs in org.textensor.report.E.dump(String, String[])	CORRECTNESS	DMI_INVOKING_TOSTRING_ON_ARRAY	227	Medium
org.textensor.report.E.time0 should be package protected	MALICIOUS_CODE	MS_PKGPROTECT	7	Medium

org.textensor.stochdiff.ResultWriter

Bug	Category	Details	Line	Priority
Found reliance on default encoding in org.textensor.stochdiff.ResultWriter.init(String, int): new java.io.OutputStreamWriter(OutputStream)	I18N	DM_DEFAULT_ENCODING	50	High
Found reliance on default encoding in org.textensor.stochdiff.ResultWriter.init(String, int): new java.io.OutputStreamWriter(OutputStream)	I18N	DM_DEFAULT_ENCODING	53	High
Found reliance on default encoding in org.textensor.stochdiff.ResultWriter.pruneFrom(String, int, double): new java.io.FileReader(File)	I18N	DM_DEFAULT_ENCODING	196	High
Found reliance on default encoding in org.textensor.stochdiff.ResultWriter.pruneFrom(String, int, double): new java.io.FileWriter(File)	I18N	DM_DEFAULT_ENCODING	197	High
Found reliance on default encoding in org.textensor.stochdiff.ResultWriter.pruneFromCount(int, double): new java.io.FileWriter(File)	I18N	DM_DEFAULT_ENCODING	260	High
Found reliance on default encoding in org.textensor.stochdiff.ResultWriter.pruneFromCount(int, double): new java.io.InputStreamReader(InputStream)	I18N	DM_DEFAULT_ENCODING	258	High
org.textensor.stochdiff.ResultWriter.pruneFromCount(int, double) invokes System.exit(...), which shuts down the entire virtual machine	BAD_PRACTICE	DM_EXIT	255	Medium
sl could be null and is guaranteed to be dereferenced in org.textensor.stochdiff.ResultWriter.pruneFrom(String, int, double)	CORRECTNESS	NP_GUARANTEED_DEREF	218	High
exceptional return value of java.io.File.delete() ignored in org.textensor.stochdiff.ResultWriter.pruneFrom(String, int, double)	BAD_PRACTICE	RV_RETURN_VALUE_IGNORED_BAD_PRACTICE	225	Medium
exceptional return value of java.io.File.renameTo(File) ignored in org.textensor.stochdiff.ResultWriter.pruneFrom(String, int, double)	BAD_PRACTICE	RV_RETURN_VALUE_IGNORED_BAD_PRACTICE	194	Medium
exceptional return value of java.io.File.delete() ignored in org.textensor.stochdiff.ResultWriter.pruneFromCount(int, double)	BAD_PRACTICE	RV_RETURN_VALUE_IGNORED_BAD_PRACTICE	249	Medium

org.textensor.stochdiff.disc.CurvedVolumeSlice

Bug	Category	Details	Line	Priority
org.textensor.stochdiff.disc.CurvedVolumeSlice.getNazimuthals() may expose internal representation by returning CurvedVolumeSlice.nazim	MALICIOUS_CODE	EI_EXPOSE_REP	41	Medium
org.textensor.stochdiff.disc.CurvedVolumeSlice.getRadii(int) may expose internal representation by returning CurvedVolumeSlice.bdsb	MALICIOUS_CODE	EI_EXPOSE_REP	37	Medium
org.textensor.stochdiff.disc.CurvedVolumeSlice.getRadialSplit(double, int, double[]) concatenates strings using + in a loop	PERFORMANCE	SBSC_USE_STRINGBUFFER_CONCATENATION	417	Medium

org.textensor.stochdiff.disc.DiscBoxer

Bug	Category	Details	Line	Priority
new org.textensor.stochdiff.disc.DiscBoxer(TreePoint[], double[]) may expose internal representation by storing an externally mutable object into DiscBoxer.srcPoints	MALICIOUS_CODE	EI_EXPOSE_REP2	38	Medium
new org.textensor.stochdiff.disc.DiscBoxer(TreePoint[], double[]) may expose internal representation by storing an externally mutable object into DiscBoxer.surfaceLayers	MALICIOUS_CODE	EI_EXPOSE_REP2	39	Medium
Unread field: org.textensor.stochdiff.disc.DiscBoxer.surfaceLayers	PERFORMANCE	URF_UNREAD_FIELD	39	Medium

org.textensor.stochdiff.disc.DiscSplitter

Bug	Category	Details	Line	Priority
new org.textensor.stochdiff.disc.DiscSplitter(TreePoint[], double, HashMap, double[], double) may expose internal representation by storing an externally mutable object into DiscSplitter.srcPoints	MALICIOUS_CODE	EI_EXPOSE_REP2	37	Medium
new org.textensor.stochdiff.disc.DiscSplitter(TreePoint[], double, HashMap, double[], double) may expose internal representation by storing an externally mutable object into DiscSplitter.surfaceLayers	MALICIOUS_CODE	EI_EXPOSE_REP2	40	Medium

org.textensor.stochdiff.disc.DiscretizedSpine

Bug	Category	Details	Line	Priority
org.textensor.stochdiff.disc.DiscretizedSpine.getBoundaries() may expose internal representation by returning DiscretizedSpine.boundaries	MALICIOUS_CODE	EI_EXPOSE_REP	19	Medium
org.textensor.stochdiff.disc.DiscretizedSpine.getLabels() may expose internal representation by returning DiscretizedSpine.labels	MALICIOUS_CODE	EI_EXPOSE_REP	27	Medium
org.textensor.stochdiff.disc.DiscretizedSpine.getRegions() may expose internal representation by returning DiscretizedSpine.regions	MALICIOUS_CODE	EI_EXPOSE_REP	30	Medium
org.textensor.stochdiff.disc.DiscretizedSpine.getWidths() may expose internal representation by returning DiscretizedSpine.widths	MALICIOUS_CODE	EI_EXPOSE_REP	23	Medium
new org.textensor.stochdiff.disc.DiscretizedSpine(double[], double[], String[], String[]) may expose internal representation by storing an externally mutable object into DiscretizedSpine.boundaries	MALICIOUS_CODE	EI_EXPOSE_REP2	11	Medium
new org.textensor.stochdiff.disc.DiscretizedSpine(double[], double[], String[], String[]) may expose internal representation by storing an externally mutable object into DiscretizedSpine.labels	MALICIOUS_CODE	EI_EXPOSE_REP2	13	Medium
new org.textensor.stochdiff.disc.DiscretizedSpine(double[], double[], String[], String[]) may expose internal representation by storing an externally mutable object into DiscretizedSpine.regions	MALICIOUS_CODE	EI_EXPOSE_REP2	14	Medium
new org.textensor.stochdiff.disc.DiscretizedSpine(double[], double[], String[], String[]) may expose internal representation by storing an externally mutable object into DiscretizedSpine.widths	MALICIOUS_CODE	EI_EXPOSE_REP2	12	Medium

org.textensor.stochdiff.disc.LineBoxer

Bug	Category	Details	Line	Priority
new org.textensor.stochdiff.disc.LineBoxer(TreePoint[], double[], double) may expose internal representation by storing an externally mutable object into LineBoxer.srcPoints	MALICIOUS_CODE	EI_EXPOSE_REP2	49	Medium
new org.textensor.stochdiff.disc.LineBoxer(TreePoint[], double[], double) may expose internal representation by storing an externally mutable object into LineBoxer.surfaceLayers	MALICIOUS_CODE	EI_EXPOSE_REP2	50	Medium

org.textensor.stochdiff.disc.Resolution

Bug	Category	Details	Line	Priority
Redundant nullcheck of org.textensor.stochdiff.disc.Resolution.deltaHM, which is known to be non-null in org.textensor.stochdiff.disc.Resolution.getLocalDelta(TreePoint, TreePoint)	STYLE	RCN_REDUNDANT_NULLCHECK_OF_NONNULL_VALUE	31	Medium

org.textensor.stochdiff.disc.SegmentSlicer

Bug	Category	Details	Line	Priority
new org.textensor.stochdiff.disc.SegmentSlicer(TreePoint[]) may expose internal representation by storing an externally mutable object into SegmentSlicer.srcPoints	MALICIOUS_CODE	EI_EXPOSE_REP2	47	Medium

org.textensor.stochdiff.disc.TreeBoxDiscretizer

Bug	Category	Details	Line	Priority
new org.textensor.stochdiff.disc.TreeBoxDiscretizer(TreePoint[]) may expose internal representation by storing an externally mutable object into TreeBoxDiscretizer.srcPoints	MALICIOUS_CODE	EI_EXPOSE_REP2	19	Medium

org.textensor.stochdiff.disc.TreeCurvedElementDiscretizer

Bug	Category	Details	Line	Priority
new org.textensor.stochdiff.disc.TreeCurvedElementDiscretizer(TreePoint[]) may expose internal representation by storing an externally mutable object into TreeCurvedElementDiscretizer.srcPoints	MALICIOUS_CODE	EI_EXPOSE_REP2	19	Medium

org.textensor.stochdiff.inter.SDState

Bug	Category	Details	Line	Priority
org.textensor.stochdiff.inter.SDState.getData() may expose internal representation by returning SDState.conc	MALICIOUS_CODE	EI_EXPOSE_REP	14	Medium

org.textensor.stochdiff.model.ConcentrationSet

Bug	Category	Details	Line	Priority
Unused public or protected field: org.textensor.stochdiff.model.ConcentrationSet.complete	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unwritten public or protected field: org.textensor.stochdiff.model.ConcentrationSet.region	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	65	Medium

org.textensor.stochdiff.model.Discretization

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.textensor.stochdiff.model.Discretization.surfaceLayers	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	90	Medium

org.textensor.stochdiff.model.FitConstraints

Bug	Category	Details	Line	Priority

org.textensor.stochdiff.model.MaxAspectRatio

Bug	Category	Details	Line	Priority
Unread public/protected field: org.textensor.stochdiff.model.MaxAspectRatio.value	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	13	Medium

org.textensor.stochdiff.model.MorphPoint

Bug	Category	Details	Line	Priority
Unread field: org.textensor.stochdiff.model.MorphPoint.r_segment	PERFORMANCE	URF_UNREAD_FIELD	58	Medium

org.textensor.stochdiff.model.NumberDensity

Bug	Category	Details	Line	Priority

org.textensor.stochdiff.model.OutputScheme

Bug	Category	Details	Line	Priority
Unused public or protected field: org.textensor.stochdiff.model.OutputScheme.outputSetHM	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.textensor.stochdiff.model.OutputSet

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.textensor.stochdiff.model.OutputSet.dt	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	62	Medium
Unwritten public or protected field: org.textensor.stochdiff.model.OutputSet.filename	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	54	Medium
Unwritten public or protected field: org.textensor.stochdiff.model.OutputSet.region	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	46	Medium

org.textensor.stochdiff.model.PicoSD

Bug	Category	Details	Line	Priority

org.textensor.stochdiff.model.Reaction

Bug	Category	Details	Line	Priority
Unused public or protected field: org.textensor.stochdiff.model.Reaction.Q10	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.model.Reaction.id	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.textensor.stochdiff.model.ReactionScheme

Bug	Category	Details	Line	Priority
Unused field: org.textensor.stochdiff.model.ReactionScheme.reactionHM	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium

org.textensor.stochdiff.model.Specie

Bug	Category	Details	Line	Priority
Unused public or protected field: org.textensor.stochdiff.model.Specie.name	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Field only ever set to null: org.textensor.stochdiff.model.Specie.kdiffunit	CORRECTNESS	UWF_NULL_FIELD	Not available	Medium

org.textensor.stochdiff.model.SpecieRef

Bug	Category	Details	Line	Priority
Unwritten public or protected field: org.textensor.stochdiff.model.SpecieRef.specieID	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	20	Medium

org.textensor.stochdiff.model.SpineType

Bug	Category	Details	Line	Priority

org.textensor.stochdiff.model.SurfaceDensitySet

Bug	Category	Details	Line	Priority
Unused public or protected field: org.textensor.stochdiff.model.SurfaceDensitySet.complete	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unwritten public or protected field: org.textensor.stochdiff.model.SurfaceDensitySet.region	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	65	Medium

org.textensor.stochdiff.model.SurfaceLayers

Bug	Category	Details	Line	Priority
org.textensor.stochdiff.model.SurfaceLayers.getValues() may expose internal representation by returning SurfaceLayers.values	MALICIOUS_CODE	EI_EXPOSE_REP	27	Medium

org.textensor.stochdiff.neuroml.MetaItem

Bug	Category	Details	Line	Priority
Unread public/protected field: org.textensor.stochdiff.neuroml.MetaItem.name	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	28	Medium
Unread public/protected field: org.textensor.stochdiff.neuroml.MetaItem.value	STYLE	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD	37	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.MetaItem.meta_name	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.MetaItem.meta_property	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.MetaItem.meta_tag	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.MetaItem.meta_value	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.textensor.stochdiff.neuroml.cable

Bug	Category	Details	Line	Priority
The class name org.textensor.stochdiff.neuroml.cable doesn't start with an upper case letter	BAD_PRACTICE	NM_CLASS_NAMING_CONVENTION	5-42	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.cable.fractAlongParent	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unwritten public or protected field: org.textensor.stochdiff.neuroml.cable.meta_group	STYLE	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD	39	Medium

org.textensor.stochdiff.neuroml.cell

Bug	Category	Details	Line	Priority
The class name org.textensor.stochdiff.neuroml.cell doesn't start with an upper case letter	BAD_PRACTICE	NM_CLASS_NAMING_CONVENTION	13-90	Medium
Unused field: org.textensor.stochdiff.neuroml.cell.srcptHM	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.cell.name	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.cell.notes	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.textensor.stochdiff.neuroml.meta

Bug	Category	Details	Line	Priority
The class name org.textensor.stochdiff.neuroml.meta doesn't start with an upper case letter	BAD_PRACTICE	NM_CLASS_NAMING_CONVENTION	11-52	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.meta.tag	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.meta.value	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.textensor.stochdiff.neuroml.morphml

Bug	Category	Details	Line	Priority
The class name org.textensor.stochdiff.neuroml.morphml doesn't start with an upper case letter	BAD_PRACTICE	NM_CLASS_NAMING_CONVENTION	12-78	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.morphml.id	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.morphml.lengthUnits	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.morphml.length_units	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.morphml.name	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.morphml.xmlns	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.morphml.xmlns_cml	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.morphml.xmlns_meta	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.morphml.xmlns_mml	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.morphml.xmlns_xsi	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.morphml.xsi_schemaLocation	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.textensor.stochdiff.neuroml.segment

Bug	Category	Details	Line	Priority
The class name org.textensor.stochdiff.neuroml.segment doesn't start with an upper case letter	BAD_PRACTICE	NM_CLASS_NAMING_CONVENTION	11-76	Medium
Unused public or protected field: org.textensor.stochdiff.neuroml.segment.properties	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.textensor.stochdiff.numeric.BaseCalc

Bug	Category	Details	Line	Priority
org.textensor.stochdiff.numeric.BaseCalc.getNanoMolarConcentrations() may expose internal representation by returning BaseCalc.baseConcentrations	MALICIOUS_CODE	EI_EXPOSE_REP	354	Medium
org.textensor.stochdiff.numeric.BaseCalc.getRegionConcentrations() may expose internal representation by returning BaseCalc.regionConcentrations	MALICIOUS_CODE	EI_EXPOSE_REP	361	Medium
org.textensor.stochdiff.numeric.BaseCalc.getRegionSurfaceDensities() may expose internal representation by returning BaseCalc.regionSurfaceDensities	MALICIOUS_CODE	EI_EXPOSE_REP	365	Medium
org.textensor.stochdiff.numeric.BaseCalc.getRevisedRegionConcentrations() may expose internal representation by returning BaseCalc.regionConcentrations	MALICIOUS_CODE	EI_EXPOSE_REP	374	Medium
org.textensor.stochdiff.numeric.BaseCalc.getRevisedRegionSurfaceDensities() may expose internal representation by returning BaseCalc.regionSurfaceDensities	MALICIOUS_CODE	EI_EXPOSE_REP	380	Medium
Unused public or protected field: org.textensor.stochdiff.numeric.BaseCalc.dt_list	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.numeric.BaseCalc.filename_list	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.numeric.BaseCalc.n_list	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.numeric.BaseCalc.region_list	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.numeric.BaseCalc.specie_names_list	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.textensor.stochdiff.numeric.StaticCalc

Bug	Category	Details	Line	Priority
org.textensor.stochdiff.numeric.StaticCalc.getVolumes() may expose internal representation by returning StaticCalc.volumes	MALICIOUS_CODE	EI_EXPOSE_REP	136	Medium
Field StaticCalc.sdRun masks field in superclass org.textensor.stochdiff.numeric.BaseCalc	CORRECTNESS	MF_CLASS_MASKS_FIELD	Not available	Medium
Unread field: org.textensor.stochdiff.numeric.StaticCalc.regionLabels	PERFORMANCE	URF_UNREAD_FIELD	64	Medium
Unread field: org.textensor.stochdiff.numeric.StaticCalc.submembranes	PERFORMANCE	URF_UNREAD_FIELD	63	Medium
Unused public or protected field: org.textensor.stochdiff.numeric.StaticCalc.sdRun	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.textensor.stochdiff.numeric.chem.ReactionTable

Bug	Category	Details	Line	Priority
org.textensor.stochdiff.numeric.chem.ReactionTable.getDiffusionConstants() may expose internal representation by returning ReactionTable.diffusionConstants	MALICIOUS_CODE	EI_EXPOSE_REP	144	Medium
org.textensor.stochdiff.numeric.chem.ReactionTable.getProductIndices() may expose internal representation by returning ReactionTable.productIndices	MALICIOUS_CODE	EI_EXPOSE_REP	324	Medium
org.textensor.stochdiff.numeric.chem.ReactionTable.getProductStochiometry() may expose internal representation by returning ReactionTable.productStochiometry	MALICIOUS_CODE	EI_EXPOSE_REP	334	Medium
org.textensor.stochdiff.numeric.chem.ReactionTable.getRates() may expose internal representation by returning ReactionTable.rates	MALICIOUS_CODE	EI_EXPOSE_REP	313	Medium
org.textensor.stochdiff.numeric.chem.ReactionTable.getReactantIndices() may expose internal representation by returning ReactionTable.reactantIndices	MALICIOUS_CODE	EI_EXPOSE_REP	319	Medium
org.textensor.stochdiff.numeric.chem.ReactionTable.getReactantStochiometry() may expose internal representation by returning ReactionTable.reactantStochiometry	MALICIOUS_CODE	EI_EXPOSE_REP	329	Medium
org.textensor.stochdiff.numeric.chem.ReactionTable.getSpecieIDs() may expose internal representation by returning ReactionTable.speciesIDs	MALICIOUS_CODE	EI_EXPOSE_REP	50	Medium
org.textensor.stochdiff.numeric.chem.ReactionTable.getSpeciesIDs() may expose internal representation by returning ReactionTable.speciesIDs	MALICIOUS_CODE	EI_EXPOSE_REP	129	Medium
org.textensor.stochdiff.numeric.chem.ReactionTable.setDiffusionConstants(double[]) may expose internal representation by storing an externally mutable object into ReactionTable.diffusionConstants	MALICIOUS_CODE	EI_EXPOSE_REP2	139	Medium
org.textensor.stochdiff.numeric.chem.ReactionTable.setSpeciesIDs(String[]) may expose internal representation by storing an externally mutable object into ReactionTable.speciesIDs	MALICIOUS_CODE	EI_EXPOSE_REP2	124	Medium

org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc

Bug	Category	Details	Line	Priority
org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc.init() invokes System.exit(...), which shuts down the entire virtual machine	BAD_PRACTICE	DM_EXIT	363	Medium
org.textensor.stochdiff.numeric.grid.SteppedStochaticGridCalc.parallelAndSharedDiffusionStep(int, int) invokes System.exit(...), which shuts down the entire virtual machine	BAD_PRACTICE	DM_EXIT	851	Medium

org.textensor.stochdiff.numeric.math.Column

Bug	Category	Details	Line	Priority
org.textensor.stochdiff.numeric.math.Column.getData() may expose internal representation by returning Column.dat	MALICIOUS_CODE	EI_EXPOSE_REP	65	Medium
new org.textensor.stochdiff.numeric.math.Column(double[]) may expose internal representation by storing an externally mutable object into Column.dat	MALICIOUS_CODE	EI_EXPOSE_REP2	17	Medium

org.textensor.stochdiff.numeric.math.Matrix

Bug	Category	Details	Line	Priority
Class org.textensor.stochdiff.numeric.math.Matrix implements Cloneable but does not define or use clone method	BAD_PRACTICE	CN_IDIOM	13-806	Medium
new org.textensor.stochdiff.numeric.math.Matrix(double[][]) may expose internal representation by storing an externally mutable object into Matrix.a	MALICIOUS_CODE	EI_EXPOSE_REP2	42	Medium
org.textensor.stochdiff.numeric.math.Matrix.COLUMN isn't final but should be	MALICIOUS_CODE	MS_SHOULD_BE_FINAL	17	High
org.textensor.stochdiff.numeric.math.Matrix.ROW isn't final but should be	MALICIOUS_CODE	MS_SHOULD_BE_FINAL	16	High
The method name org.textensor.stochdiff.numeric.math.Matrix.Sp(String) doesn't start with a lower case letter	BAD_PRACTICE	NM_METHOD_NAMING_CONVENTION	91-92	Medium

org.textensor.stochdiff.numeric.math.MersenneTwister

Bug	Category	Details	Line	Priority
Vacuous iand operation on MersenneTwister.java:[line 73] in org.textensor.stochdiff.numeric.math.MersenneTwister.setSeed(long)	STYLE	INT_VACUOUS_BIT_OPERATION	73	Medium

org.textensor.stochdiff.numeric.morph.CurvedVolumeElement

Bug	Category	Details	Line	Priority
Dead store to nv in org.textensor.stochdiff.numeric.morph.CurvedVolumeElement.getText3D()	STYLE	DLS_DEAD_LOCAL_STORE	120	Medium
org.textensor.stochdiff.numeric.morph.CurvedVolumeElement.setTriangles(int[], float[][], float[][]) may expose internal representation by storing an externally mutable object into CurvedVolumeElement.norms	MALICIOUS_CODE	EI_EXPOSE_REP2	109	Medium
org.textensor.stochdiff.numeric.morph.CurvedVolumeElement.setTriangles(int[], float[][], float[][]) may expose internal representation by storing an externally mutable object into CurvedVolumeElement.stripLengths	MALICIOUS_CODE	EI_EXPOSE_REP2	107	Medium
org.textensor.stochdiff.numeric.morph.CurvedVolumeElement.setTriangles(int[], float[][], float[][]) may expose internal representation by storing an externally mutable object into CurvedVolumeElement.verts	MALICIOUS_CODE	EI_EXPOSE_REP2	108	Medium
Unread field: org.textensor.stochdiff.numeric.morph.CurvedVolumeElement.iazimuthal	PERFORMANCE	URF_UNREAD_FIELD	102	Medium
Unread field: org.textensor.stochdiff.numeric.morph.CurvedVolumeElement.iradial	PERFORMANCE	URF_UNREAD_FIELD	101	Medium
Format string should use %n rather than \n in org.textensor.stochdiff.numeric.morph.CurvedVolumeElement.getText3D()	BAD_PRACTICE	VA_FORMAT_STRING_USES_NEWLINE	124	Medium

org.textensor.stochdiff.numeric.morph.SpineDistribution

Bug	Category	Details	Line	Priority
org.textensor.stochdiff.numeric.morph.SpineDistribution.getPopulations() may expose internal representation by returning SpineDistribution.populations	MALICIOUS_CODE	EI_EXPOSE_REP	15	Medium
new org.textensor.stochdiff.numeric.morph.SpineDistribution(SpinePopulation[]) may expose internal representation by storing an externally mutable object into SpineDistribution.populations	MALICIOUS_CODE	EI_EXPOSE_REP2	10	Medium

org.textensor.stochdiff.numeric.morph.SpineProfile

Bug	Category	Details	Line	Priority
org.textensor.stochdiff.numeric.morph.SpineProfile.getLabels() may expose internal representation by returning SpineProfile.labels	MALICIOUS_CODE	EI_EXPOSE_REP	39	Medium
org.textensor.stochdiff.numeric.morph.SpineProfile.getRegions() may expose internal representation by returning SpineProfile.regions	MALICIOUS_CODE	EI_EXPOSE_REP	43	Medium
org.textensor.stochdiff.numeric.morph.SpineProfile.getWidths() may expose internal representation by returning SpineProfile.widths	MALICIOUS_CODE	EI_EXPOSE_REP	35	Medium
org.textensor.stochdiff.numeric.morph.SpineProfile.getXPts() may expose internal representation by returning SpineProfile.lpoints	MALICIOUS_CODE	EI_EXPOSE_REP	30	Medium
new org.textensor.stochdiff.numeric.morph.SpineProfile(String, double[], double[], String[], String[]) may expose internal representation by storing an externally mutable object into SpineProfile.labels	MALICIOUS_CODE	EI_EXPOSE_REP2	20	Medium
new org.textensor.stochdiff.numeric.morph.SpineProfile(String, double[], double[], String[], String[]) may expose internal representation by storing an externally mutable object into SpineProfile.lpoints	MALICIOUS_CODE	EI_EXPOSE_REP2	17	Medium
new org.textensor.stochdiff.numeric.morph.SpineProfile(String, double[], double[], String[], String[]) may expose internal representation by storing an externally mutable object into SpineProfile.regions	MALICIOUS_CODE	EI_EXPOSE_REP2	21	Medium
new org.textensor.stochdiff.numeric.morph.SpineProfile(String, double[], double[], String[], String[]) may expose internal representation by storing an externally mutable object into SpineProfile.widths	MALICIOUS_CODE	EI_EXPOSE_REP2	18	Medium

org.textensor.stochdiff.numeric.morph.TreePoint

Bug	Category	Details	Line	Priority
Unused public or protected field: org.textensor.stochdiff.numeric.morph.TreePoint.dgx	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.numeric.morph.TreePoint.dgy	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium
Unused public or protected field: org.textensor.stochdiff.numeric.morph.TreePoint.name	STYLE	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD	Not available	Medium

org.textensor.stochdiff.numeric.morph.TreeWriter

Bug	Category	Details	Line	Priority
new org.textensor.stochdiff.numeric.morph.TreeWriter(TreePoint[]) may expose internal representation by storing an externally mutable object into TreeWriter.points	MALICIOUS_CODE	EI_EXPOSE_REP2	14	Medium

org.textensor.stochdiff.numeric.morph.VolumeElement

Bug	Category	Details	Line	Priority
org.textensor.stochdiff.numeric.morph.VolumeElement.getSurfaceBoundary() may expose internal representation by returning VolumeElement.surfaceBoundary	MALICIOUS_CODE	EI_EXPOSE_REP	151	Medium
org.textensor.stochdiff.numeric.morph.VolumeElement.setBoundary(Position[]) may expose internal representation by storing an externally mutable object into VolumeElement.boundary	MALICIOUS_CODE	EI_EXPOSE_REP2	143	Medium
org.textensor.stochdiff.numeric.morph.VolumeElement.setSurfaceBoundary(Position[]) may expose internal representation by storing an externally mutable object into VolumeElement.surfaceBoundary	MALICIOUS_CODE	EI_EXPOSE_REP2	147	Medium

org.textensor.stochdiff.numeric.morph.VolumeGrid

Bug	Category	Details	Line	Priority
org.textensor.stochdiff.numeric.morph.VolumeGrid.makeAreaHM() invokes inefficient new Integer(int) constructor; use Integer.valueOf(int) instead	PERFORMANCE	DM_NUMBER_CTOR	419	Medium
org.textensor.stochdiff.numeric.morph.VolumeGrid.getElementVolumes() may expose internal representation by returning VolumeGrid.volumes	MALICIOUS_CODE	EI_EXPOSE_REP	251	Medium
org.textensor.stochdiff.numeric.morph.VolumeGrid.getExposedAreas() may expose internal representation by returning VolumeGrid.exposedAreas	MALICIOUS_CODE	EI_EXPOSE_REP	255	Medium
org.textensor.stochdiff.numeric.morph.VolumeGrid.getPerElementCouplingConstants() may expose internal representation by returning VolumeGrid.eltNbrG	MALICIOUS_CODE	EI_EXPOSE_REP	271	Medium
org.textensor.stochdiff.numeric.morph.VolumeGrid.getPerElementNeighbors() may expose internal representation by returning VolumeGrid.eltNbrs	MALICIOUS_CODE	EI_EXPOSE_REP	266	Medium
org.textensor.stochdiff.numeric.morph.VolumeGrid.getRegionIndexes() may expose internal representation by returning VolumeGrid.eltRegions	MALICIOUS_CODE	EI_EXPOSE_REP	239	Medium
org.textensor.stochdiff.numeric.morph.VolumeGrid.getRegionLabels() may expose internal representation by returning VolumeGrid.regionLabels	MALICIOUS_CODE	EI_EXPOSE_REP	281	Medium
org.textensor.stochdiff.numeric.morph.VolumeGrid.getSubmembranes() may expose internal representation by returning VolumeGrid.submembranes	MALICIOUS_CODE	EI_EXPOSE_REP	261	Medium
org.textensor.stochdiff.numeric.morph.VolumeGrid.getMatches(HashMap, String) makes inefficient use of keySet iterator instead of entrySet iterator	PERFORMANCE	WMI_WRONG_MAP_ITERATOR	387	Medium
org.textensor.stochdiff.numeric.morph.VolumeGrid.makeAreaHM() makes inefficient use of keySet iterator instead of entrySet iterator	PERFORMANCE	WMI_WRONG_MAP_ITERATOR	434	Medium

org.textensor.stochdiff.numeric.morph.VolumeLine

Bug	Category	Details	Line	Priority
new org.textensor.stochdiff.numeric.morph.VolumeLine(int, int, double[], double, double) may expose internal representation by storing an externally mutable object into VolumeLine.slw	MALICIOUS_CODE	EI_EXPOSE_REP2	35	Medium
Computation of average could overflow in org.textensor.stochdiff.numeric.morph.VolumeLine.lineFill(Position, Position, String, String)	STYLE	IM_AVERAGE_COMPUTATION_COULD_OVERFLOW	133	Medium
Private method org.textensor.stochdiff.numeric.morph.VolumeLine.makeRanges(double, int) is never called	PERFORMANCE	UPM_UNCALLED_PRIVATE_METHOD	314-321	Medium

org.textensor.stochdiff.numeric.stochastic.DiscretePStepGenerator

Bug	Category	Details	Line	Priority
org.textensor.stochdiff.numeric.stochastic.DiscretePStepGenerator.getGenerator(double) invokes inefficient new Integer(int) constructor; use Integer.valueOf(int) instead	PERFORMANCE	DM_NUMBER_CTOR	52	Medium

org.textensor.stochdiff.numeric.stochastic.NGoTable

Bug	Category	Details	Line	Priority
Computation of average could overflow in org.textensor.stochdiff.numeric.stochastic.NGoTable.nGoBS(double)	STYLE	IM_AVERAGE_COMPUTATION_COULD_OVERFLOW	168	Medium

org.textensor.stochdiff.numeric.tmp.Tmp1A

Bug	Category	Details	Line	Priority
org.textensor.stochdiff.numeric.tmp.Tmp1A.init() invokes System.exit(...), which shuts down the entire virtual machine	BAD_PRACTICE	DM_EXIT	319	Medium
org.textensor.stochdiff.numeric.tmp.Tmp1A.parallelAndSharedDiffusionStep(int, int) invokes System.exit(...), which shuts down the entire virtual machine	BAD_PRACTICE	DM_EXIT	771	Medium

org.textensor.stochdiff.reduce.Reducer

Bug	Category	Details	Line	Priority
org.textensor.stochdiff.reduce.Reducer.printconc(double[][]) concatenates strings using + in a loop	PERFORMANCE	SBSC_USE_STRINGBUFFER_CONCATENATION	246	Medium
org.textensor.stochdiff.reduce.Reducer.reduce() concatenates strings using + in a loop	PERFORMANCE	SBSC_USE_STRINGBUFFER_CONCATENATION	149	Medium

org.textensor.util.ArrayUtil

Bug	Category	Details	Line	Priority
Computation of average could overflow in org.textensor.util.ArrayUtil.findBracket(double[], double)	STYLE	IM_AVERAGE_COMPUTATION_COULD_OVERFLOW	47	Medium

org.textensor.util.FileUtil

Bug	Category	Details	Line	Priority
Invocation of toString on ba in org.textensor.util.FileUtil.writeByteArrayToFile(byte[], File)	CORRECTNESS	DMI_INVOKING_TOSTRING_ON_ARRAY	136	Medium
Found reliance on default encoding in org.textensor.util.FileUtil.readFirstLine(File): new java.io.InputStreamReader(InputStream)	I18N	DM_DEFAULT_ENCODING	203	High
Found reliance on default encoding in org.textensor.util.FileUtil.readStringFromFile(File): new java.io.InputStreamReader(InputStream)	I18N	DM_DEFAULT_ENCODING	67	High
Found reliance on default encoding in org.textensor.util.FileUtil.writeStringToFile(String, File): new java.io.OutputStreamWriter(OutputStream)	I18N	DM_DEFAULT_ENCODING	98	High
org.textensor.util.FileUtil.copyFile(File, File) may fail to clean up java.io.InputStream on checked exception	EXPERIMENTAL	OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE	145	Medium
org.textensor.util.FileUtil.copyFile(File, File) may fail to clean up java.io.OutputStream on checked exception	EXPERIMENTAL	OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE	146	Medium
org.textensor.util.FileUtil.readHeader(File, int) may fail to clean up java.io.InputStream on checked exception	EXPERIMENTAL	OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE	20	Medium
org.textensor.util.FileUtil.readBytes(File) may fail to close stream	BAD_PRACTICE	OS_OPEN_STREAM	39	Medium
org.textensor.util.FileUtil.writeByteArrayToFile(byte[], File) may fail to close stream	BAD_PRACTICE	OS_OPEN_STREAM	132	Medium
Nullcheck of f at line 91 of value previously dereferenced in org.textensor.util.FileUtil.writeStringToFile(String, File)	CORRECTNESS	RCN_REDUNDANT_NULLCHECK_WOULD_HAVE_BEEN_A_NPE	89	Medium
Exception is caught when Exception is not thrown in org.textensor.util.FileUtil.copyFile(File, File)	STYLE	REC_CATCH_EXCEPTION	156	Medium

org.textensor.vis.ElementReader

Bug	Category	Details	Line	Priority
Dead store to itok in org.textensor.vis.ElementReader.nextFloat(StreamTokenizer)	STYLE	DLS_DEAD_LOCAL_STORE	79	Medium
Dead store to itok in org.textensor.vis.ElementReader.nextInt(StreamTokenizer)	STYLE	DLS_DEAD_LOCAL_STORE	66	Medium
Found reliance on default encoding in org.textensor.vis.ElementReader.read(): new java.io.FileReader(File)	I18N	DM_DEFAULT_ENCODING	26	High

org.textensor.vis.Icing3DViewer

Bug	Category	Details	Line	Priority
org.textensor.vis.Icing3DViewer.reallyBuildVewable(Object) may expose internal representation by storing an externally mutable object into Icing3DViewer.cachedPoints	MALICIOUS_CODE	EI_EXPOSE_REP2	100	Medium
Redundant nullcheck of obj, which is known to be non-null in org.textensor.vis.Icing3DViewer.makeColor(Object)	STYLE	RCN_REDUNDANT_NULLCHECK_OF_NONNULL_VALUE	157	High

org.textensor.vis.IcingPoint

Bug	Category	Details	Line	Priority
Unread field: org.textensor.vis.IcingPoint.partof	PERFORMANCE	URF_UNREAD_FIELD	27	Medium

org.textensor.vis.SceneGraphViewer

Bug	Category	Details	Line	Priority
org.textensor.vis.SceneGraphViewer.hideShape(Shape3D) invokes inefficient new Integer(int) constructor; use Integer.valueOf(int) instead	PERFORMANCE	DM_NUMBER_CTOR	613	Medium
org.textensor.vis.SceneGraphViewer.showAll() invokes inefficient new Integer(int) constructor; use Integer.valueOf(int) instead	PERFORMANCE	DM_NUMBER_CTOR	473	Medium
org.textensor.vis.SceneGraphViewer.showFraction(double) invokes inefficient new Integer(int) constructor; use Integer.valueOf(int) instead	PERFORMANCE	DM_NUMBER_CTOR	445	Medium
org.textensor.vis.SceneGraphViewer.showShape(Shape3D) invokes inefficient new Integer(int) constructor; use Integer.valueOf(int) instead	PERFORMANCE	DM_NUMBER_CTOR	629	Medium
org.textensor.vis.SceneGraphViewer.toggleHideShape(Shape3D) invokes inefficient new Integer(int) constructor; use Integer.valueOf(int) instead	PERFORMANCE	DM_NUMBER_CTOR	599	Medium
SceneItem is incompatible with expected argument type String in org.textensor.vis.SceneGraphViewer.removeUnlistedDecoration(HashSet)	CORRECTNESS	GC_UNRELATED_TYPES	886	High
SceneItem is incompatible with expected argument type String in org.textensor.vis.SceneGraphViewer.setDecoration(String, BranchGroup, boolean)	CORRECTNESS	GC_UNRELATED_TYPES	872	High

org.textensor.vis.VolElt

Bug	Category	Details	Line	Priority
org.textensor.vis.VolElt.getLens() may expose internal representation by returning VolElt.lens	MALICIOUS_CODE	EI_EXPOSE_REP	28	Medium
org.textensor.vis.VolElt.getNorms() may expose internal representation by returning VolElt.norms	MALICIOUS_CODE	EI_EXPOSE_REP	36	Medium
org.textensor.vis.VolElt.getVerts() may expose internal representation by returning VolElt.verts	MALICIOUS_CODE	EI_EXPOSE_REP	32	Medium
new org.textensor.vis.VolElt(int[], float[], float[]) may expose internal representation by storing an externally mutable object into VolElt.lens	MALICIOUS_CODE	EI_EXPOSE_REP2	17	Medium
new org.textensor.vis.VolElt(int[], float[], float[]) may expose internal representation by storing an externally mutable object into VolElt.norms	MALICIOUS_CODE	EI_EXPOSE_REP2	19	Medium
new org.textensor.vis.VolElt(int[], float[], float[]) may expose internal representation by storing an externally mutable object into VolElt.verts	MALICIOUS_CODE	EI_EXPOSE_REP2	18	Medium

org.textensor.xml.Narrower

Bug	Category	Details	Line	Priority
org.textensor.xml.Narrower.narrow(String, Object) invokes inefficient Boolean constructor; use Boolean.valueOf(...) instead	PERFORMANCE	DM_BOOLEAN_CTOR	26	Medium
org.textensor.xml.Narrower.narrow(String, Object) invokes inefficient new Integer(int) constructor; use Integer.valueOf(int) instead	PERFORMANCE	DM_NUMBER_CTOR	23	Medium

org.textensor.xml.ReflectionInstantiator

Bug	Category	Details	Line	Priority
Unread field: org.textensor.xml.ReflectionInstantiator.search	PERFORMANCE	URF_UNREAD_FIELD	17	Medium

org.textensor.xml.XMLReader

Bug	Category	Details	Line	Priority
Redundant nullcheck of child, which is known to be non-null in org.textensor.xml.XMLReader.readFieldIntoParent(XMLTokenizer, Object, XMLToken)	STYLE	RCN_REDUNDANT_NULLCHECK_OF_NONNULL_VALUE	243	Medium
Unread field: org.textensor.xml.XMLReader.progressFraction	PERFORMANCE	URF_UNREAD_FIELD	50	Medium
Unread field: org.textensor.xml.XMLReader.sourceLength	PERFORMANCE	URF_UNREAD_FIELD	53	Medium

org.textensor.xml.XMLReader$XMLHolder

Bug	Category	Details	Line	Priority
Should org.textensor.xml.XMLReader$XMLHolder be a _static_ inner class?	PERFORMANCE	SIC_INNER_SHOULD_BE_STATIC	81-92	Medium

org.textensor.xml.XMLToken

Bug	Category	Details	Line	Priority
org.textensor.xml.XMLToken.setAttributes(String[]) may expose internal representation by storing an externally mutable object into XMLToken.attNV	MALICIOUS_CODE	EI_EXPOSE_REP2	120	Medium
org.textensor.xml.XMLToken.toString() concatenates strings using + in a loop	PERFORMANCE	SBSC_USE_STRINGBUFFER_CONCATENATION	94	Medium

org.textensor.xml.XMLTokenizer

Bug	Category	Details	Line	Priority
Possible null pointer dereference of sval in org.textensor.xml.XMLTokenizer.nextToken()	CORRECTNESS	NP_NULL_ON_SOME_PATH	203	Medium
org.textensor.xml.XMLTokenizer.nextToken() concatenates strings using + in a loop	PERFORMANCE	SBSC_USE_STRINGBUFFER_CONCATENATION	191	Medium
Unused field: org.textensor.xml.XMLTokenizer.count	PERFORMANCE	UUF_UNUSED_FIELD	Not available	Medium

Project Documentation

FindBugs Bug Detector Report

Summary

Files

org.catacomb.act.FunctionSignature

org.catacomb.act.MethodStub

org.catacomb.act.SignatureComparator

org.catacomb.be.ChangeEvent

org.catacomb.be.TimePoint

org.catacomb.datalish.SColor

org.catacomb.datalish.SceneConfig

org.catacomb.datalish.SpriteMarker

org.catacomb.datalish.SpritePart

org.catacomb.datalish.array.Array

org.catacomb.dataview.BatchImageMaker

org.catacomb.dataview.DView

org.catacomb.dataview.DataviewController

org.catacomb.dataview.FrameController

org.catacomb.dataview.LinePlotElement

org.catacomb.dataview.Plot

org.catacomb.dataview.PointsPlotElement

org.catacomb.dataview.PolygonPlotElement

org.catacomb.dataview.RasterRowElement

org.catacomb.dataview.build.CompoundView

org.catacomb.dataview.build.DVPanel

org.catacomb.dataview.build.DataPlot

org.catacomb.dataview.build.DataSource

org.catacomb.dataview.build.Dataview

org.catacomb.dataview.build.Displayable

org.catacomb.dataview.build.FrameSelector

org.catacomb.dataview.build.Line

org.catacomb.dataview.display.Displayable

org.catacomb.dataview.display.PolyLine

org.catacomb.dataview.display.ViewConfig

org.catacomb.dataview.formats.Mesh2plusTimeDisplay

org.catacomb.dataview.formats.MeshDataReader

org.catacomb.dataview.formats.PolyLineHandler

org.catacomb.dataview.formats.SWCDisplay

org.catacomb.dataview.formats.SWCDisplay$Node

org.catacomb.dataview.formats.TableDataHandler

org.catacomb.dataview.formats.TableDataReader

org.catacomb.dataview.gui.DViewPlotController

org.catacomb.dataview.gui.FramePlayerController

org.catacomb.dataview.model.Plottable

org.catacomb.dataview.read.CustomJarContentReader

org.catacomb.dataview.read.CustomJarReader

org.catacomb.dataview.read.JarImportContext

org.catacomb.dataview.read.NumericContentReader

org.catacomb.dataview.read.NumericContentType

org.catacomb.dataview.read.URLImportContext

org.catacomb.dataview.read.XMLContentReader

org.catacomb.dataview.read.XMLContentType

org.catacomb.druid.blocks.AbleEffect

org.catacomb.druid.blocks.Application

org.catacomb.druid.blocks.AssemblyPanel

org.catacomb.druid.blocks.AutonomousPanel

org.catacomb.druid.blocks.BorderPanel

org.catacomb.druid.blocks.BoxPanel

org.catacomb.druid.blocks.BrowserPanel

org.catacomb.druid.blocks.Button

org.catacomb.druid.blocks.CardSelectionEffect

org.catacomb.druid.blocks.Checkbox

org.catacomb.druid.blocks.CheckboxMenuItem

org.catacomb.druid.blocks.CheckboxTree

org.catacomb.druid.blocks.ChildrenOf

org.catacomb.druid.blocks.Choice

org.catacomb.druid.blocks.CloseEffect

org.catacomb.druid.blocks.CollapsiblePanel

org.catacomb.druid.blocks.ColorChoice

org.catacomb.druid.blocks.ContainerPanel

org.catacomb.druid.blocks.DashedLine

org.catacomb.druid.blocks.DataDisplay

org.catacomb.druid.blocks.Dialog

org.catacomb.druid.blocks.DrawingCanvas

org.catacomb.druid.blocks.DropBox

org.catacomb.druid.blocks.EditorWindow

org.catacomb.druid.blocks.ExpandingTextArea

org.catacomb.druid.blocks.FloatSlider

org.catacomb.druid.blocks.Frame

org.catacomb.druid.blocks.HTMLPanel